RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 TRIM66O15016 1216 aa13.41□□□□□ -0.26
CIITA-202ENST00000381835 TSPAN1O60635 241 aa13.41□□□□□ -0.26
CIITA-202ENST00000381835 SLC9A1P19634 815 aa13.41□□□□□ -0.26
CIITA-202ENST00000381835 PROZP22891 400 aa13.41□□□□□ -0.26
CIITA-202ENST00000381835 EIF4BP23588 611 aaKnown RBP13.41□□□□□ -0.26
CIITA-202ENST00000381835 MCM3P25205 808 aa13.41□□□□□ -0.26
CIITA-202ENST00000381835 TNFSF9P41273 254 aa13.41□□□□□ -0.26
CIITA-202ENST00000381835 TNNT3P45378 269 aaPredicted RBP13.41□□□□□ -0.26
CIITA-202ENST00000381835 OSTNP61366 133 aa13.41□□□□□ -0.26
CIITA-202ENST00000381835 PTGISQ16647 500 aa13.41□□□□□ -0.26
CIITA-202ENST00000381835 GBP6Q6ZN66 633 aa13.41□□□□□ -0.26
CIITA-202ENST00000381835 CATSPER4Q7RTX7 472 aa13.41□□□□□ -0.26
CIITA-202ENST00000381835 THNSL1Q8IYQ7 743 aa13.41□□□□□ -0.26
CIITA-202ENST00000381835 GOLGA6L1Q8N7Z2 621 aa13.41□□□□□ -0.26
CIITA-202ENST00000381835 TMEM40Q8WWA1 233 aa13.41□□□□□ -0.26
CIITA-202ENST00000381835 WNT8BQ93098 351 aa13.41□□□□□ -0.26
CIITA-202ENST00000381835 DEFB118Q96PH6 123 aa13.41□□□□□ -0.26
CIITA-202ENST00000381835 TTYH3Q9C0H2 523 aa13.41□□□□□ -0.26
CIITA-202ENST00000381835 RNF208Q9H0X6 261 aa13.41□□□□□ -0.26
CIITA-202ENST00000381835 RBAKQ9NYW8 714 aaPredicted RBP13.41□□□□□ -0.26
CIITA-202ENST00000381835 SAR1BQ9Y6B6 198 aa13.41□□□□□ -0.26
CIITA-202ENST00000381835 KBTBD13C9JR72 458 aa13.41□□□□□ -0.26
CIITA-202ENST00000381835 OGTO15294 1046 aa13.41□□□□□ -0.26
CIITA-202ENST00000381835 RPS6KA5O75582 802 aa13.41□□□□□ -0.26
CIITA-202ENST00000381835 ATP1A1P05023 1023 aaKnown RBP13.41□□□□□ -0.26
CIITA-202ENST00000381835 ACTN1P12814 892 aa13.41□□□□□ -0.26
CIITA-202ENST00000381835 DARSP14868 501 aaKnown RBP13.41□□□□□ -0.26
CIITA-202ENST00000381835 MYL7Q01449 175 aa13.41□□□□□ -0.26
CIITA-202ENST00000381835 MAP9Q49MG5 647 aa13.41□□□□□ -0.26
CIITA-202ENST00000381835 SERINC5Q86VE9 423 aa13.41□□□□□ -0.26
CIITA-202ENST00000381835 SESTD1Q86VW0 696 aa13.41□□□□□ -0.26
CIITA-202ENST00000381835 CEP120Q8N960 986 aa13.41□□□□□ -0.26
CIITA-202ENST00000381835 FNBP1Q96RU3 617 aa13.41□□□□□ -0.26
CIITA-202ENST00000381835 MMS19Q96T76 1030 aa13.41□□□□□ -0.26
CIITA-202ENST00000381835 TSEN34Q9BSV6 310 aaKnown RBP13.41□□□□□ -0.26
CIITA-202ENST00000381835 CDT1Q9H211 546 aa13.41□□□□□ -0.26
CIITA-202ENST00000381835 FAM204AQ9H8W3 233 aa13.41□□□□□ -0.26
CIITA-202ENST00000381835 TOPORSQ9NS56 1045 aaPredicted RBP13.41□□□□□ -0.26
CIITA-202ENST00000381835 CAPN11Q9UMQ6 739 aa13.41□□□□□ -0.26
CIITA-202ENST00000381835 NOD1Q9Y239 953 aa13.41□□□□□ -0.26
CIITA-202ENST00000381835 A0A1W2PQ45 241 aaPredicted RBP13.4□□□□□ -0.26
CIITA-202ENST00000381835 A0A1W2PQY0 241 aa13.4□□□□□ -0.26
CIITA-202ENST00000381835 M0QZ92 97 aa13.4□□□□□ -0.26
CIITA-202ENST00000381835 CTSHP09668 335 aa13.4□□□□□ -0.26
CIITA-202ENST00000381835 CCL5P13501 91 aa13.4□□□□□ -0.26
CIITA-202ENST00000381835 WNT7BP56706 349 aa13.4□□□□□ -0.26
CIITA-202ENST00000381835 KRT83P78385 493 aa13.4□□□□□ -0.26
CIITA-202ENST00000381835 SNX17Q15036 470 aa13.4□□□□□ -0.26
CIITA-202ENST00000381835 LMBRD2Q68DH5 695 aaPredicted RBP13.4□□□□□ -0.26
CIITA-202ENST00000381835 USP37Q86T82 979 aa13.4□□□□□ -0.26
CIITA-202ENST00000381835 KIAA1328Q86T90 577 aa13.4□□□□□ -0.26
CIITA-202ENST00000381835 RSPH3Q86UC2 560 aa13.4□□□□□ -0.26
CIITA-202ENST00000381835 TMC2Q8TDI7 906 aa13.4□□□□□ -0.26
CIITA-202ENST00000381835 FAM212AQ96EL1 285 aa13.4□□□□□ -0.26
CIITA-202ENST00000381835 FAM84AQ96KN4 292 aa13.4□□□□□ -0.26
CIITA-202ENST00000381835 DNAJC7Q99615 494 aa13.4□□□□□ -0.26
CIITA-202ENST00000381835 PDZD7Q9H5P4 517 aa13.4□□□□□ -0.26
CIITA-202ENST00000381835 VIPAS39Q9H9C1 493 aa13.4□□□□□ -0.26
CIITA-202ENST00000381835 NLRC4Q9NPP4 1024 aa13.4□□□□□ -0.26
CIITA-202ENST00000381835 STARD7Q9NQZ5 370 aa13.4□□□□□ -0.26
CIITA-202ENST00000381835 TRMT13Q9NUP7 481 aaKnown RBP13.4□□□□□ -0.26
CIITA-202ENST00000381835 TFR2Q9UP52 801 aa13.4□□□□□ -0.26
CIITA-202ENST00000381835 GTPBP10A4D1E9 387 aaKnown RBP13.4□□□□□ -0.26
CIITA-202ENST00000381835 FAM189A1O60320 539 aa13.4□□□□□ -0.26
CIITA-202ENST00000381835 SRGAP2O75044 1071 aa13.4□□□□□ -0.26
CIITA-202ENST00000381835 CHRM1P11229 460 aaPredicted RBP13.4□□□□□ -0.26
CIITA-202ENST00000381835 TNNI1P19237 187 aa13.4□□□□□ -0.26
CIITA-202ENST00000381835 PON1P27169 355 aa13.4□□□□□ -0.26
CIITA-202ENST00000381835 MXI1P50539 228 aa13.4□□□□□ -0.26
CIITA-202ENST00000381835 CRYBB1P53674 252 aaPredicted RBP13.4□□□□□ -0.26
CIITA-202ENST00000381835 FIGNQ5HY92 759 aa13.4□□□□□ -0.26
CIITA-202ENST00000381835 CACNA2D4Q7Z3S7 1137 aa13.4□□□□□ -0.26
CIITA-202ENST00000381835 CAPZA3Q96KX2 299 aa13.4□□□□□ -0.26
CIITA-202ENST00000381835 CELF4Q9BZC1 486 aaKnown RBP13.4□□□□□ -0.26
CIITA-202ENST00000381835 TMEM117Q9H0C3 514 aa13.4□□□□□ -0.26
CIITA-202ENST00000381835 PAK6Q9NQU5 681 aaPredicted RBP13.4□□□□□ -0.26
CIITA-202ENST00000381835 CDY2AQ9Y6F7 541 aa13.4□□□□□ -0.26
CIITA-202ENST00000381835 KRT86O43790 486 aa13.39□□□□□ -0.27
CIITA-202ENST00000381835 RNF40O75150 1001 aa13.39□□□□□ -0.27
CIITA-202ENST00000381835 NOL4O94818 638 aa13.39□□□□□ -0.27
CIITA-202ENST00000381835 MRPS6P82932 125 aaKnown RBP13.39□□□□□ -0.27
CIITA-202ENST00000381835 CKAP4Q07065 602 aaKnown RBP13.39□□□□□ -0.27
CIITA-202ENST00000381835 MAPK8IP2Q13387 824 aaPredicted RBP13.39□□□□□ -0.27
CIITA-202ENST00000381835 PSMD6Q15008 389 aa13.39□□□□□ -0.27
CIITA-202ENST00000381835 EHBP1Q8NDI1 1231 aa13.39□□□□□ -0.27
CIITA-202ENST00000381835 JAKMIP2Q96AA8 810 aa13.39□□□□□ -0.27
CIITA-202ENST00000381835 ADPGKQ9BRR6 497 aa13.39□□□□□ -0.27
CIITA-202ENST00000381835 A0A1B0GUA9 196 aa13.39□□□□□ -0.27
CIITA-202ENST00000381835 HSPA8P11142 646 aaKnown RBP13.39□□□□□ -0.27
CIITA-202ENST00000381835 HOXA11P31270 313 aaPredicted RBP13.39□□□□□ -0.27
CIITA-202ENST00000381835 THPOP40225 353 aa13.39□□□□□ -0.27
CIITA-202ENST00000381835 POLR2FP61218 127 aaKnown RBP13.39□□□□□ -0.27
CIITA-202ENST00000381835 ZBED6P86452 979 aa13.39□□□□□ -0.27
CIITA-202ENST00000381835 CETN1Q12798 172 aa13.39□□□□□ -0.27
CIITA-202ENST00000381835 PAPD7Q5XG87 772 aaKnown RBP13.39□□□□□ -0.27
CIITA-202ENST00000381835 FOXR1Q6PIV2 292 aa13.39□□□□□ -0.27
CIITA-202ENST00000381835 WDR59Q6PJI9 974 aa13.39□□□□□ -0.27
CIITA-202ENST00000381835 TMEM192Q8IY95 271 aa13.39□□□□□ -0.27
CIITA-202ENST00000381835 RPGRIP1Q96KN7 1286 aa13.39□□□□□ -0.27
CIITA-202ENST00000381835 ZNHIT6Q9NWK9 470 aaKnown RBP13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms