RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 FATE1Q969F0 183 aa3.07□□□□□ -1.92
VPS13A-206ENST00000376646 CAVIN3Q969G5 261 aa3.07□□□□□ -1.92
VPS13A-206ENST00000376646 PJA2O43164 708 aa3.06□□□□□ -1.92
VPS13A-206ENST00000376646 PPFIA2O75334 1257 aa3.06□□□□□ -1.92
VPS13A-206ENST00000376646 AMY1AP04745 511 aa3.06□□□□□ -1.92
VPS13A-206ENST00000376646 ATP5JP18859 108 aa3.06□□□□□ -1.92
VPS13A-206ENST00000376646 BMPR1AP36894 532 aa3.06□□□□□ -1.92
VPS13A-206ENST00000376646 MTNR1BP49286 362 aa3.06□□□□□ -1.92
VPS13A-206ENST00000376646 SEC24CP53992 1094 aa3.06□□□□□ -1.92
VPS13A-206ENST00000376646 USP14P54578 494 aa3.06□□□□□ -1.92
VPS13A-206ENST00000376646 ERVK-21P61565 698 aa3.06□□□□□ -1.92
VPS13A-206ENST00000376646 HSD11B2P80365 405 aa3.06□□□□□ -1.92
VPS13A-206ENST00000376646 DPY19L2P1Q6NXN4 242 aa3.06□□□□□ -1.92
VPS13A-206ENST00000376646 GPR149Q86SP6 731 aa3.06□□□□□ -1.92
VPS13A-206ENST00000376646 RHOT2Q8IXI1 618 aa3.06□□□□□ -1.92
VPS13A-206ENST00000376646 RNF31Q96EP0 1072 aa3.06□□□□□ -1.92
VPS13A-206ENST00000376646 ADI1Q9BV57 179 aa3.06□□□□□ -1.92
VPS13A-206ENST00000376646 ALOXE3Q9BYJ1 711 aa3.06□□□□□ -1.92
VPS13A-206ENST00000376646 RNF181Q9P0P0 153 aa3.06□□□□□ -1.92
VPS13A-206ENST00000376646 ATP11BQ9Y2G3 1177 aa3.06□□□□□ -1.92
VPS13A-206ENST00000376646 PCSK5Q92824 1860 aa3.06□□□□□ -1.92
VPS13A-206ENST00000376646 A0A1B0GTW7 788 aa3.05□□□□□ -1.92
VPS13A-206ENST00000376646 TCRBV7S2A1N4TA0A589 114 aa3.05□□□□□ -1.92
VPS13A-206ENST00000376646 PIPSLA2A3N6 862 aa3.05□□□□□ -1.92
VPS13A-206ENST00000376646 DIRC3C9JPN6 131 aa3.05□□□□□ -1.92
VPS13A-206ENST00000376646 CDKL5O76039 1030 aa3.05□□□□□ -1.92
VPS13A-206ENST00000376646 ZFPL1O95159 310 aa3.05□□□□□ -1.92
VPS13A-206ENST00000376646 TYRP1P17643 537 aa3.05□□□□□ -1.92
VPS13A-206ENST00000376646 FGFR4P22455 802 aa3.05□□□□□ -1.92
VPS13A-206ENST00000376646 SP140Q13342 867 aa3.05□□□□□ -1.92
VPS13A-206ENST00000376646 UBXN2BQ14CS0 331 aa3.05□□□□□ -1.92
VPS13A-206ENST00000376646 TMEM132CQ8N3T6 1108 aa3.05□□□□□ -1.92
VPS13A-206ENST00000376646 ATL2Q8NHH9 583 aa3.05□□□□□ -1.92
VPS13A-206ENST00000376646 NACC2Q96BF6 587 aa3.05□□□□□ -1.92
VPS13A-206ENST00000376646 R3HDMLQ9H3Y0 253 aa3.05□□□□□ -1.92
VPS13A-206ENST00000376646 LANCL2Q9NS86 450 aa3.05□□□□□ -1.92
VPS13A-206ENST00000376646 ZAR1LA6NP61 321 aa3.05□□□□□ -1.92
VPS13A-206ENST00000376646 RHOBTB3O94955 611 aa3.05□□□□□ -1.92
VPS13A-206ENST00000376646 SPATA31D3P0C874 917 aa3.05□□□□□ -1.92
VPS13A-206ENST00000376646 EGR2P11161 476 aaPredicted RBP3.05□□□□□ -1.92
VPS13A-206ENST00000376646 MTHFD2P13995 350 aa3.05□□□□□ -1.92
VPS13A-206ENST00000376646 CLUL1Q15846 466 aa3.05□□□□□ -1.92
VPS13A-206ENST00000376646 SPATA31D4Q6ZUB0 917 aa3.05□□□□□ -1.92
VPS13A-206ENST00000376646 SPATS2Q86XZ4 545 aaKnown RBP3.05□□□□□ -1.92
VPS13A-206ENST00000376646 FAM177A1Q8N128 213 aaPredicted RBP3.05□□□□□ -1.92
VPS13A-206ENST00000376646 LINC00476Q8WZB0 136 aa3.05□□□□□ -1.92
VPS13A-206ENST00000376646 MARS2Q96GW9 593 aaKnown RBP3.05□□□□□ -1.92
VPS13A-206ENST00000376646 FUBP3Q96I24 572 aaKnown RBP eCLIP3.05□□□□□ -1.92
VPS13A-206ENST00000376646 PAWRQ96IZ0 340 aaKnown RBP3.05□□□□□ -1.92
VPS13A-206ENST00000376646 Q96MF0 132 aa3.05□□□□□ -1.92
VPS13A-206ENST00000376646 INTUQ9ULD6 942 aa3.05□□□□□ -1.92
VPS13A-206ENST00000376646 ZBTB21Q9ULJ3 1066 aa3.05□□□□□ -1.92
VPS13A-206ENST00000376646 CDHR4A6H8M9 788 aa3.04□□□□□ -1.92
VPS13A-206ENST00000376646 MGST3O14880 152 aa3.04□□□□□ -1.92
VPS13A-206ENST00000376646 PPFIA4O75335 1185 aa3.04□□□□□ -1.92
VPS13A-206ENST00000376646 GPR32O75388 356 aa3.04□□□□□ -1.92
VPS13A-206ENST00000376646 HLA-DOAP06340 250 aa3.04□□□□□ -1.92
VPS13A-206ENST00000376646 VIL1P09327 827 aaKnown RBP3.04□□□□□ -1.92
VPS13A-206ENST00000376646 IARSP41252 1262 aaKnown RBP3.04□□□□□ -1.92
VPS13A-206ENST00000376646 NOMO3P69849 1222 aa3.04□□□□□ -1.92
VPS13A-206ENST00000376646 HNRNPA0Q13151 305 aaKnown RBP3.04□□□□□ -1.92
VPS13A-206ENST00000376646 NOMO2Q5JPE7 1267 aa3.04□□□□□ -1.92
VPS13A-206ENST00000376646 DCBLD1Q8N8Z6 715 aa3.04□□□□□ -1.92
VPS13A-206ENST00000376646 NRG4Q8WWG1 115 aa3.04□□□□□ -1.92
VPS13A-206ENST00000376646 BBC3Q96PG8 261 aaPredicted RBP3.04□□□□□ -1.92
VPS13A-206ENST00000376646 TESQ9UGI8 421 aaKnown RBP3.04□□□□□ -1.92
VPS13A-206ENST00000376646 GPR45Q9Y5Y3 372 aa3.04□□□□□ -1.92
VPS13A-206ENST00000376646 KRTAP29-1A8MX34 341 aaPredicted RBP3.04□□□□□ -1.92
VPS13A-206ENST00000376646 KIAA0391O15091 583 aaKnown RBP3.04□□□□□ -1.92
VPS13A-206ENST00000376646 POMCP01189 267 aa3.04□□□□□ -1.92
VPS13A-206ENST00000376646 HKR1P10072 659 aa3.04□□□□□ -1.92
VPS13A-206ENST00000376646 IL2RBP14784 551 aa3.04□□□□□ -1.92
VPS13A-206ENST00000376646 SLC6A4P31645 630 aa3.04□□□□□ -1.92
VPS13A-206ENST00000376646 MPLP40238 635 aa3.04□□□□□ -1.92
VPS13A-206ENST00000376646 IL12RB1P42701 662 aa3.04□□□□□ -1.92
VPS13A-206ENST00000376646 CXADRP78310 365 aa3.04□□□□□ -1.92
VPS13A-206ENST00000376646 MGAT2Q10469 447 aa3.04□□□□□ -1.92
VPS13A-206ENST00000376646 MTM1Q13496 603 aa3.04□□□□□ -1.92
VPS13A-206ENST00000376646 KRT26Q7Z3Y9 468 aa3.04□□□□□ -1.92
VPS13A-206ENST00000376646 RHOT1Q8IXI2 618 aa3.04□□□□□ -1.92
VPS13A-206ENST00000376646 DRC7Q8IY82 874 aa3.04□□□□□ -1.92
VPS13A-206ENST00000376646 CNTD1Q8N815 330 aa3.04□□□□□ -1.92
VPS13A-206ENST00000376646 DDX55Q8NHQ9 600 aaKnown RBP eCLIP3.04□□□□□ -1.92
VPS13A-206ENST00000376646 GSTO2Q9H4Y5 243 aa3.04□□□□□ -1.92
VPS13A-206ENST00000376646 RSAD1Q9HA92 442 aa3.04□□□□□ -1.92
VPS13A-206ENST00000376646 TMEM140Q9NV12 185 aa3.04□□□□□ -1.92
VPS13A-206ENST00000376646 MOCS1Q9NZB8 636 aa3.04□□□□□ -1.92
VPS13A-206ENST00000376646 HSFX1Q9UBD0 423 aa3.04□□□□□ -1.92
VPS13A-206ENST00000376646 MYBBP1AQ9BQG0 1328 aaKnown RBP3.04□□□□□ -1.92
VPS13A-206ENST00000376646 GPANK1O95872 356 aa3.03□□□□□ -1.92
VPS13A-206ENST00000376646 MT-CO1P00395 513 aa3.03□□□□□ -1.92
VPS13A-206ENST00000376646 FOSP01100 380 aaPredicted RBP3.03□□□□□ -1.92
VPS13A-206ENST00000376646 SBK3P0C264 359 aa3.03□□□□□ -1.92
VPS13A-206ENST00000376646 DDCP20711 480 aa3.03□□□□□ -1.92
VPS13A-206ENST00000376646 AGXTP21549 392 aa3.03□□□□□ -1.92
VPS13A-206ENST00000376646 CXCR5P32302 372 aa3.03□□□□□ -1.92
VPS13A-206ENST00000376646 ANO4Q32M45 955 aa3.03□□□□□ -1.92
VPS13A-206ENST00000376646 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP3.03□□□□□ -1.92
VPS13A-206ENST00000376646 ADGRG3Q86Y34 549 aa3.03□□□□□ -1.92
VPS13A-206ENST00000376646 VSX1Q9NZR4 365 aaPredicted RBP3.03□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms