RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 BRAPQ7Z569 592 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 CROCCP2Q86T23 111 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 CHSY1Q86X52 802 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 ARHGEF19Q8IW93 802 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 SMAP1Q8IYB5 467 aaPredicted RBP4.34□□□□□ -1.71
USH2A-202ENST00000366942 TRPM4Q8TD43 1214 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 CXorf40BQ96DE9 158 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 CCDC42Q96M95 316 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 ZBTB18Q99592 522 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 SYTL2Q9HCH5 934 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 NGBQ9NPG2 151 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 VPS9D1Q9Y2B5 631 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 NVLO15381 856 aaKnown RBP4.34□□□□□ -1.71
USH2A-202ENST00000366942 CREB3O43889 395 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 TSPAN3O60637 253 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 PRDM1O75626 825 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 MYL1P05976 194 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 ARP10275 920 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 SYN1P17600 705 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 AKT2P31751 481 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 GLUD2P49448 558 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 MAP3K10Q02779 954 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 ITGADQ13349 1161 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 TTLL9Q3SXZ7 439 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 RNF43Q68DV7 783 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 GRAMD4Q6IC98 578 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 OR6B2Q6IFH4 312 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 CAMK1DQ8IU85 385 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 SLC7A14Q8TBB6 771 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 SEC14L1Q92503 715 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 TMEM125Q96AQ2 219 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 CCDC124Q96CT7 223 aaKnown RBP4.34□□□□□ -1.71
USH2A-202ENST00000366942 DCBLD2Q96PD2 775 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 LRRC37BQ96QE4 947 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 TINF2Q9BSI4 451 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 NXF1Q9UBU9 619 aaKnown RBP4.34□□□□□ -1.71
USH2A-202ENST00000366942 PCDHB4Q9Y5E5 795 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 UTP18Q9Y5J1 556 aaKnown RBP eCLIP4.34□□□□□ -1.71
USH2A-202ENST00000366942 ATP7BP35670 1465 aa4.34□□□□□ -1.72
USH2A-202ENST00000366942 F8VZ95 297 aa4.34□□□□□ -1.72
USH2A-202ENST00000366942 SEPT4O43236 478 aa4.34□□□□□ -1.72
USH2A-202ENST00000366942 B3GAT3O94766 335 aa4.34□□□□□ -1.72
USH2A-202ENST00000366942 MMP3P08254 477 aa4.34□□□□□ -1.72
USH2A-202ENST00000366942 TLE2Q04725 743 aa4.34□□□□□ -1.72
USH2A-202ENST00000366942 EFHC2Q5JST6 749 aa4.34□□□□□ -1.72
USH2A-202ENST00000366942 SH2D4BQ5SQS7 431 aa4.34□□□□□ -1.72
USH2A-202ENST00000366942 ZBTB41Q5SVQ8 909 aa4.34□□□□□ -1.72
USH2A-202ENST00000366942 TBC1D9BQ66K14 1250 aa4.34□□□□□ -1.72
USH2A-202ENST00000366942 TTC19Q6DKK2 380 aaPredicted RBP4.34□□□□□ -1.72
USH2A-202ENST00000366942 C7orf57Q8NEG2 295 aa4.34□□□□□ -1.72
USH2A-202ENST00000366942 RSAD2Q8WXG1 361 aa4.34□□□□□ -1.72
USH2A-202ENST00000366942 PIGKQ92643 395 aa4.34□□□□□ -1.72
USH2A-202ENST00000366942 HDAC11Q96DB2 347 aa4.34□□□□□ -1.72
USH2A-202ENST00000366942 UBXN6Q9BZV1 441 aa4.34□□□□□ -1.72
USH2A-202ENST00000366942 SLC13A1Q9BZW2 595 aa4.34□□□□□ -1.72
USH2A-202ENST00000366942 BHMT2Q9H2M3 363 aa4.34□□□□□ -1.72
USH2A-202ENST00000366942 ARMC7Q9H6L4 198 aa4.34□□□□□ -1.72
USH2A-202ENST00000366942 GPR108Q9NPR9 543 aa4.34□□□□□ -1.72
USH2A-202ENST00000366942 CCDC177Q9NQR7 707 aaPredicted RBP4.34□□□□□ -1.72
USH2A-202ENST00000366942 CYP26B1Q9NR63 512 aa4.34□□□□□ -1.72
USH2A-202ENST00000366942 KLF15Q9UIH9 416 aa4.34□□□□□ -1.72
USH2A-202ENST00000366942 RAD54BQ9Y620 910 aa4.34□□□□□ -1.72
USH2A-202ENST00000366942 FRMPD2Q68DX3 1309 aaPredicted RBP4.34□□□□□ -1.72
USH2A-202ENST00000366942 RFX7Q2KHR2 1363 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 GPAA1O43292 621 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 USP17L7P0C7H9 530 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 DLATP10515 647 aaKnown RBP4.33□□□□□ -1.72
USH2A-202ENST00000366942 GPC3P51654 580 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 CCR3P51677 355 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 OAZ1P54368 228 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 ERVK-9P63128 1117 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 ERVK-24P63145 666 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 ACVR2BQ13705 512 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 TSNAXIP1Q2TAA8 658 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 LARP7Q4G0J3 582 aaKnown RBP eCLIP4.33□□□□□ -1.72
USH2A-202ENST00000366942 C10orf120Q5SQS8 335 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 RARS2Q5T160 578 aaKnown RBP4.33□□□□□ -1.72
USH2A-202ENST00000366942 KLC3Q6P597 504 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 LCTLQ6UWM7 567 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 NLRP9Q7RTR0 991 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 MARCH10Q8NA82 808 aaPredicted RBP4.33□□□□□ -1.72
USH2A-202ENST00000366942 CCNYQ8ND76 341 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 ZNF592Q92610 1267 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 FAR2Q96K12 515 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 BRINP2Q9C0B6 783 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 FBXO44Q9H4M3 255 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 MAGEF1Q9HAY2 307 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 COQ3Q9NZJ6 369 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 SLC27A6Q9Y2P4 619 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 KDRP35968 1356 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 PIPSLA2A3N6 862 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 URADA6NGE7 173 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 HNRNPCL2B2RXH8 293 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 E5RI56 91 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 H0YHG0 523 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 HAX1O00165 279 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 ACSL4O60488 711 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 HNRNPCL1O60812 293 aaKnown RBP4.33□□□□□ -1.72
USH2A-202ENST00000366942 THP07101 528 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 GNL1P36915 607 aaPredicted RBP4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms