RNA–Protein interactions for RNA: ENST00000361654.8

CLIP1-203, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 5,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-203ENST00000361654 PRG3Q9Y2Y8 225 aaPredicted RBP11.55□□□□□ -0.56
CLIP1-203ENST00000361654 NEDD4P46934 1319 aa11.55□□□□□ -0.56
CLIP1-203ENST00000361654 TTLL13PA6NNM8 815 aa11.55□□□□□ -0.56
CLIP1-203ENST00000361654 UBE2Q2LH0YL09 131 aa11.55□□□□□ -0.56
CLIP1-203ENST00000361654 ACSL3O95573 720 aa11.55□□□□□ -0.56
CLIP1-203ENST00000361654 CXCR5P32302 372 aa11.55□□□□□ -0.56
CLIP1-203ENST00000361654 HNRNPH2P55795 449 aaKnown RBP11.55□□□□□ -0.56
CLIP1-203ENST00000361654 TWF1Q12792 350 aa11.55□□□□□ -0.56
CLIP1-203ENST00000361654 PDAP1Q13442 181 aaKnown RBP11.55□□□□□ -0.56
CLIP1-203ENST00000361654 DRAP1Q14919 205 aaPredicted RBP11.55□□□□□ -0.56
CLIP1-203ENST00000361654 C10orf120Q5SQS8 335 aa11.55□□□□□ -0.56
CLIP1-203ENST00000361654 PABPC5Q96DU9 382 aaKnown RBP11.55□□□□□ -0.56
CLIP1-203ENST00000361654 EVA1BQ9NVM1 165 aa11.55□□□□□ -0.56
CLIP1-203ENST00000361654 PNPLA7Q6ZV29 1317 aa11.55□□□□□ -0.56
CLIP1-203ENST00000361654 PIK3R2O00459 728 aa11.55□□□□□ -0.56
CLIP1-203ENST00000361654 TBX3O15119 743 aa11.55□□□□□ -0.56
CLIP1-203ENST00000361654 TLR2O60603 784 aa11.55□□□□□ -0.56
CLIP1-203ENST00000361654 RAG1P15918 1043 aa11.55□□□□□ -0.56
CLIP1-203ENST00000361654 ABCE1P61221 599 aaKnown RBP11.55□□□□□ -0.56
CLIP1-203ENST00000361654 TGFB2P61812 414 aa11.55□□□□□ -0.56
CLIP1-203ENST00000361654 C16orf72Q14CZ0 275 aa11.55□□□□□ -0.56
CLIP1-203ENST00000361654 GUF1Q8N442 669 aaKnown RBP11.55□□□□□ -0.56
CLIP1-203ENST00000361654 DNAJC5Q9H3Z4 198 aa11.55□□□□□ -0.56
CLIP1-203ENST00000361654 MROH8Q9H579 483 aa11.55□□□□□ -0.56
CLIP1-203ENST00000361654 MTMR4Q9NYA4 1195 aa11.55□□□□□ -0.56
CLIP1-203ENST00000361654 SYNCRIPO60506 623 aaKnown RBP11.54□□□□□ -0.56
CLIP1-203ENST00000361654 DDIASQ8IXT1 998 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 SYT2Q8N9I0 419 aaPredicted RBP11.54□□□□□ -0.56
CLIP1-203ENST00000361654 TMEM143Q96AN5 459 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 WNT8AQ9H1J5 351 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 NDE1Q9NXR1 346 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 AKAP7Q9P0M2 348 aaPredicted RBP11.54□□□□□ -0.56
CLIP1-203ENST00000361654 EMSYQ7Z589 1322 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 NMT2O60551 498 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 TYK2P29597 1187 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 EEF1DP29692 281 aaKnown RBP11.54□□□□□ -0.56
CLIP1-203ENST00000361654 GRIN1Q05586 938 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 P3H1Q32P28 736 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 PREPLQ4J6C6 727 aaPredicted RBP11.54□□□□□ -0.56
CLIP1-203ENST00000361654 ATF7IP2Q5U623 682 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 RESP18Q5W5W9 173 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 EFCAB12Q6NXP0 572 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 ATP6V0D2Q8N8Y2 350 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 KLHL29Q96CT2 875 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 AIFM3Q96NN9 605 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.54□□□□□ -0.56
CLIP1-203ENST00000361654 NAGPAQ9UK23 515 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 RFX7Q2KHR2 1363 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 TRPA1O75762 1119 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 ACADMP11310 421 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 HPCAP84074 193 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 MAP3K10Q02779 954 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 ZNF543Q08ER8 600 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 ELAVL2Q12926 359 aaKnown RBP11.54□□□□□ -0.56
CLIP1-203ENST00000361654 PDIA5Q14554 519 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 HIST2H2ACQ16777 129 aaPredicted RBP11.54□□□□□ -0.56
CLIP1-203ENST00000361654 HIST2H2AA3Q6FI13 130 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 VSTM4Q8IW00 320 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 NT5C1AQ9BXI3 368 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 MFSD1Q9H3U5 465 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 YY1AP1Q9H869 796 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 MANSC4A6NHS7 340 aaPredicted RBP11.54□□□□□ -0.56
CLIP1-203ENST00000361654 ATP9BO43861 1147 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 DCTN3O75935 186 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 TAF6P49848 677 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 RPL10AP62906 217 aaKnown RBP11.54□□□□□ -0.56
CLIP1-203ENST00000361654 C2orf54Q08AI8 447 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 TMEM62Q0P6H9 643 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 RNF135Q8IUD6 432 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 GPR63Q9BZJ6 419 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 PPARGC1AQ9UBK2 798 aaKnown RBP11.54□□□□□ -0.56
CLIP1-203ENST00000361654 MYO5CQ9NQX4 1742 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 FTLP02792 175 aaPredicted RBP11.54□□□□□ -0.56
CLIP1-203ENST00000361654 IGKV5-2P06315 115 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 BLVRAP53004 296 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 STARD3Q14849 445 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 POLD3Q15054 466 aaPredicted RBP11.54□□□□□ -0.56
CLIP1-203ENST00000361654 PTRHD1Q6GMV3 140 aaKnown RBP11.54□□□□□ -0.56
CLIP1-203ENST00000361654 CDC42EP5Q6NZY7 148 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 ATP11CQ8NB49 1132 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 RDM1Q8NG50 284 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 CALML6Q8TD86 181 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 CAPN11Q9UMQ6 739 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 UBQLN1Q9UMX0 589 aaKnown RBP11.54□□□□□ -0.56
CLIP1-203ENST00000361654 PPP2R3BQ9Y5P8 575 aa11.54□□□□□ -0.56
CLIP1-203ENST00000361654 LGALS16A8MUM7 142 aa11.53□□□□□ -0.56
CLIP1-203ENST00000361654 SNAP23O00161 211 aa11.53□□□□□ -0.56
CLIP1-203ENST00000361654 PDXKO00764 312 aa11.53□□□□□ -0.56
CLIP1-203ENST00000361654 C2CD2LO14523 706 aa11.53□□□□□ -0.56
CLIP1-203ENST00000361654 CAND2O75155 1236 aa11.53□□□□□ -0.56
CLIP1-203ENST00000361654 SLC1A1P43005 524 aa11.53□□□□□ -0.56
CLIP1-203ENST00000361654 HDLBPQ00341 1268 aaKnown RBP11.53□□□□□ -0.56
CLIP1-203ENST00000361654 TP53BP2Q13625 1128 aa11.53□□□□□ -0.56
CLIP1-203ENST00000361654 PHF21AQ96BD5 680 aa11.53□□□□□ -0.56
CLIP1-203ENST00000361654 THG1LQ9NWX6 298 aaKnown RBP11.53□□□□□ -0.56
CLIP1-203ENST00000361654 FBXL21Q9UKT6 434 aa11.53□□□□□ -0.56
CLIP1-203ENST00000361654 SNX5Q9Y5X3 404 aa11.53□□□□□ -0.56
CLIP1-203ENST00000361654 SPATA31A1Q5TZJ5 1347 aa11.53□□□□□ -0.56
CLIP1-203ENST00000361654 CARNS1A5YM72 827 aa11.53□□□□□ -0.56
CLIP1-203ENST00000361654 SYCE1LA8MT33 242 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms