RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 C2orf40Q9H1Z8 148 aa15.3■□□□□ 0.04
VPS29-201ENST00000360579 FZD8Q9H461 694 aa15.3■□□□□ 0.04
VPS29-201ENST00000360579 HCFC1R1Q9NWW0 138 aa15.3■□□□□ 0.04
VPS29-201ENST00000360579 MTRRQ9UBK8 725 aa15.3■□□□□ 0.04
VPS29-201ENST00000360579 BACE2Q9Y5Z0 518 aa15.3■□□□□ 0.04
VPS29-201ENST00000360579 PATJQ8NI35 1801 aa15.29■□□□□ 0.04
VPS29-201ENST00000360579 STK36Q9NRP7 1315 aa15.29■□□□□ 0.04
VPS29-201ENST00000360579 TMEM189-UBE2V1I3L0A0 370 aa15.29■□□□□ 0.04
VPS29-201ENST00000360579 TRAPPC3O43617 180 aa15.29■□□□□ 0.04
VPS29-201ENST00000360579 RECQL4O94761 1208 aa15.29■□□□□ 0.04
VPS29-201ENST00000360579 RBM25P49756 843 aaKnown RBP15.29■□□□□ 0.04
VPS29-201ENST00000360579 MTAPQ13126 283 aa15.29■□□□□ 0.04
VPS29-201ENST00000360579 STK3Q13188 491 aa15.29■□□□□ 0.04
VPS29-201ENST00000360579 CDCA2Q69YH5 1023 aaPredicted RBP15.29■□□□□ 0.04
VPS29-201ENST00000360579 TSSK4Q6SA08 328 aa15.29■□□□□ 0.04
VPS29-201ENST00000360579 ANKS3Q6ZW76 656 aa15.29■□□□□ 0.04
VPS29-201ENST00000360579 CELF5Q8N6W0 485 aaKnown RBP15.29■□□□□ 0.04
VPS29-201ENST00000360579 ING5Q8WYH8 240 aa15.29■□□□□ 0.04
VPS29-201ENST00000360579 HEBP1Q9NRV9 189 aa15.29■□□□□ 0.04
VPS29-201ENST00000360579 SNTG2Q9NY99 539 aa15.29■□□□□ 0.04
VPS29-201ENST00000360579 CDY1Q9Y6F8 540 aa15.29■□□□□ 0.04
VPS29-201ENST00000360579 ARID2Q68CP9 1835 aa15.29■□□□□ 0.04
VPS29-201ENST00000360579 EPB41L2O43491 1005 aaKnown RBP15.28■□□□□ 0.04
VPS29-201ENST00000360579 USO1O60763 962 aaKnown RBP15.28■□□□□ 0.04
VPS29-201ENST00000360579 B3GAT3O94766 335 aa15.28■□□□□ 0.04
VPS29-201ENST00000360579 RHOP08100 348 aa15.28■□□□□ 0.04
VPS29-201ENST00000360579 TGM1P22735 817 aa15.28■□□□□ 0.04
VPS29-201ENST00000360579 PRPF4BQ13523 1007 aaKnown RBP15.28■□□□□ 0.04
VPS29-201ENST00000360579 NAB2Q15742 525 aa15.28■□□□□ 0.04
VPS29-201ENST00000360579 CALCRLQ16602 461 aa15.28■□□□□ 0.04
VPS29-201ENST00000360579 MAPK6Q16659 721 aa15.28■□□□□ 0.04
VPS29-201ENST00000360579 LAIR1Q6GTX8 287 aa15.28■□□□□ 0.04
VPS29-201ENST00000360579 SKAP1Q86WV1 359 aa15.28■□□□□ 0.04
VPS29-201ENST00000360579 MCRS1Q96EZ8 462 aa15.28■□□□□ 0.04
VPS29-201ENST00000360579 UROC1Q96N76 676 aa15.28■□□□□ 0.04
VPS29-201ENST00000360579 CHRDQ9H2X0 955 aa15.28■□□□□ 0.04
VPS29-201ENST00000360579 PDZD7Q9H5P4 517 aa15.28■□□□□ 0.04
VPS29-201ENST00000360579 BRMS1Q9HCU9 246 aa15.28■□□□□ 0.04
VPS29-201ENST00000360579 DCDC2BA2VCK2 349 aa15.27■□□□□ 0.04
VPS29-201ENST00000360579 ZNF197O14709 1029 aa15.27■□□□□ 0.04
VPS29-201ENST00000360579 LRP3O75074 770 aa15.27■□□□□ 0.04
VPS29-201ENST00000360579 MICAL2O94851 1124 aa15.27■□□□□ 0.04
VPS29-201ENST00000360579 LRG1P02750 347 aa15.27■□□□□ 0.04
VPS29-201ENST00000360579 ADRB1P08588 477 aa15.27■□□□□ 0.04
VPS29-201ENST00000360579 PTPN2P17706 415 aa15.27■□□□□ 0.04
VPS29-201ENST00000360579 ELF1P32519 619 aa15.27■□□□□ 0.04
VPS29-201ENST00000360579 CCR3P51677 355 aa15.27■□□□□ 0.04
VPS29-201ENST00000360579 FZD5Q13467 585 aa15.27■□□□□ 0.04
VPS29-201ENST00000360579 APBB1IPQ7Z5R6 666 aaPredicted RBP15.27■□□□□ 0.04
VPS29-201ENST00000360579 NETO1Q8TDF5 533 aa15.27■□□□□ 0.04
VPS29-201ENST00000360579 OXER1Q8TDS5 423 aa15.27■□□□□ 0.04
VPS29-201ENST00000360579 PIGOQ8TEQ8 1089 aa15.27■□□□□ 0.04
VPS29-201ENST00000360579 WASF1Q92558 559 aa15.27■□□□□ 0.04
VPS29-201ENST00000360579 IRF7Q92985 503 aa15.27■□□□□ 0.04
VPS29-201ENST00000360579 TM6SF1Q9BZW5 370 aa15.27■□□□□ 0.04
VPS29-201ENST00000360579 TTC12Q9H892 705 aaPredicted RBP15.27■□□□□ 0.04
VPS29-201ENST00000360579 BRD9Q9H8M2 597 aa15.27■□□□□ 0.04
VPS29-201ENST00000360579 ZFP14Q9HCL3 533 aa15.27■□□□□ 0.04
VPS29-201ENST00000360579 COL4A3Q01955 1670 aa15.27■□□□□ 0.03
VPS29-201ENST00000360579 ARHGEF37A1IGU5 675 aa15.26■□□□□ 0.03
VPS29-201ENST00000360579 ACKR2O00590 384 aa15.26■□□□□ 0.03
VPS29-201ENST00000360579 RETP07949 1114 aa15.26■□□□□ 0.03
VPS29-201ENST00000360579 KRT2P35908 639 aa15.26■□□□□ 0.03
VPS29-201ENST00000360579 SLC5A9Q2M3M2 681 aa15.26■□□□□ 0.03
VPS29-201ENST00000360579 DCAF4L1Q3SXM0 396 aa15.26■□□□□ 0.03
VPS29-201ENST00000360579 TANGO2Q6ICL3 276 aa15.26■□□□□ 0.03
VPS29-201ENST00000360579 MAEAQ7L5Y9 396 aa15.26■□□□□ 0.03
VPS29-201ENST00000360579 NOSTRINQ8IVI9 506 aa15.26■□□□□ 0.03
VPS29-201ENST00000360579 ZNF461Q8TAF7 563 aa15.26■□□□□ 0.03
VPS29-201ENST00000360579 TRMT61BQ9BVS5 477 aaKnown RBP15.26■□□□□ 0.03
VPS29-201ENST00000360579 PLA2G2FQ9BZM2 168 aa15.26■□□□□ 0.03
VPS29-201ENST00000360579 PARD6AQ9NPB6 346 aa15.26■□□□□ 0.03
VPS29-201ENST00000360579 GPRC5CQ9NQ84 441 aa15.26■□□□□ 0.03
VPS29-201ENST00000360579 TRPV5Q9NQA5 729 aa15.26■□□□□ 0.03
VPS29-201ENST00000360579 NDRG2Q9UN36 371 aaKnown RBP15.26■□□□□ 0.03
VPS29-201ENST00000360579 PRRG1O14668 218 aa15.25■□□□□ 0.03
VPS29-201ENST00000360579 FOXD2O60548 495 aaPredicted RBP15.25■□□□□ 0.03
VPS29-201ENST00000360579 PRKCBP05771 671 aa15.25■□□□□ 0.03
VPS29-201ENST00000360579 TDGF1P13385 188 aa15.25■□□□□ 0.03
VPS29-201ENST00000360579 CEBPBP17676 345 aa15.25■□□□□ 0.03
VPS29-201ENST00000360579 ATP2B1P20020 1258 aa15.25■□□□□ 0.03
VPS29-201ENST00000360579 SCRN1Q12765 414 aa15.25■□□□□ 0.03
VPS29-201ENST00000360579 ST3GAL2Q16842 350 aa15.25■□□□□ 0.03
VPS29-201ENST00000360579 EARS2Q5JPH6 523 aaKnown RBP15.25■□□□□ 0.03
VPS29-201ENST00000360579 SLC8B1Q6J4K2 584 aa15.25■□□□□ 0.03
VPS29-201ENST00000360579 ZNF687Q8N1G0 1237 aa15.25■□□□□ 0.03
VPS29-201ENST00000360579 DDX27Q96GQ7 796 aaKnown RBP15.25■□□□□ 0.03
VPS29-201ENST00000360579 PPP1R10Q96QC0 940 aaKnown RBP15.25■□□□□ 0.03
VPS29-201ENST00000360579 LARP6Q9BRS8 491 aaKnown RBP15.25■□□□□ 0.03
VPS29-201ENST00000360579 PDRG1Q9NUG6 133 aa15.25■□□□□ 0.03
VPS29-201ENST00000360579 GDAQ9Y2T3 454 aa15.25■□□□□ 0.03
VPS29-201ENST00000360579 DOCK6Q96HP0 2047 aa15.25■□□□□ 0.03
VPS29-201ENST00000360579 CHD8Q9HCK8 2581 aa15.24■□□□□ 0.03
VPS29-201ENST00000360579 SHISA7A6NL88 538 aa15.24■□□□□ 0.03
VPS29-201ENST00000360579 SLC30A4O14863 429 aa15.24■□□□□ 0.03
VPS29-201ENST00000360579 NEMFO60524 1076 aa15.24■□□□□ 0.03
VPS29-201ENST00000360579 ABLIM3O94929 683 aa15.24■□□□□ 0.03
VPS29-201ENST00000360579 FCARP24071 287 aa15.24■□□□□ 0.03
VPS29-201ENST00000360579 TKTP29401 623 aaKnown RBP15.24■□□□□ 0.03
VPS29-201ENST00000360579 TXKP42681 527 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms