RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.43■□□□□ 0.229e-7■■■□□ 15.5
PTPRF-201ENST00000359947 WEE1P30291 646 aa16.43■□□□□ 0.22
PTPRF-201ENST00000359947 HARS2P49590 506 aaKnown RBP16.43■□□□□ 0.22
PTPRF-201ENST00000359947 AP3M2P53677 418 aa16.43■□□□□ 0.22
PTPRF-201ENST00000359947 SEZ6Q53EL9 994 aa16.43■□□□□ 0.22
PTPRF-201ENST00000359947 RRM2BQ7LG56 351 aa16.43■□□□□ 0.22
PTPRF-201ENST00000359947 ABCB6Q9NP58 842 aa16.43■□□□□ 0.22
PTPRF-201ENST00000359947 LATS2Q9NRM7 1088 aa16.43■□□□□ 0.22
PTPRF-201ENST00000359947 KDM6AO15550 1401 aaPredicted RBP16.43■□□□□ 0.22
PTPRF-201ENST00000359947 IQSEC2Q5JU85 1478 aa16.43■□□□□ 0.22
PTPRF-201ENST00000359947 ALKQ9UM73 1620 aa16.43■□□□□ 0.22
PTPRF-201ENST00000359947 MAGEB2O15479 319 aa16.43■□□□□ 0.22
PTPRF-201ENST00000359947 PDAP1Q13442 181 aaKnown RBP16.43■□□□□ 0.22
PTPRF-201ENST00000359947 ARHGAP15Q53QZ3 475 aa16.43■□□□□ 0.22
PTPRF-201ENST00000359947 MFSD4BQ5TF39 518 aa16.43■□□□□ 0.22
PTPRF-201ENST00000359947 BTBD6Q96KE9 485 aa16.43■□□□□ 0.22
PTPRF-201ENST00000359947 FOPNLQ96NB1 174 aa16.43■□□□□ 0.22
PTPRF-201ENST00000359947 DDX47Q9H0S4 455 aaKnown RBP16.43■□□□□ 0.22
PTPRF-201ENST00000359947 TRIM45Q9H8W5 580 aaPredicted RBP16.43■□□□□ 0.22
PTPRF-201ENST00000359947 CNOT10Q9H9A5 744 aaKnown RBP16.43■□□□□ 0.22
PTPRF-201ENST00000359947 PCDHGB4Q9UN71 923 aa16.43■□□□□ 0.22
PTPRF-201ENST00000359947 DIS3Q9Y2L1 958 aaKnown RBP16.43■□□□□ 0.22
PTPRF-201ENST00000359947 ESYT3A0FGR9 886 aa16.42■□□□□ 0.22
PTPRF-201ENST00000359947 DCDC2CA8MYV0 355 aa16.42■□□□□ 0.22
PTPRF-201ENST00000359947 MYBL1P10243 752 aa16.42■□□□□ 0.22
PTPRF-201ENST00000359947 TMEM169Q96HH4 297 aa16.42■□□□□ 0.22
PTPRF-201ENST00000359947 TAAR1Q96RJ0 339 aa16.42■□□□□ 0.22
PTPRF-201ENST00000359947 TXLNGQ9NUQ3 528 aa16.42■□□□□ 0.22
PTPRF-201ENST00000359947 ZC3H11AO75152 810 aaKnown RBP eCLIP16.42■□□□□ 0.22
PTPRF-201ENST00000359947 PEX19P40855 299 aa16.42■□□□□ 0.22
PTPRF-201ENST00000359947 RGS2P41220 211 aa16.42■□□□□ 0.22
PTPRF-201ENST00000359947 SNRNP35Q16560 246 aaKnown RBP16.42■□□□□ 0.22
PTPRF-201ENST00000359947 TKFCQ3LXA3 575 aa16.42■□□□□ 0.22
PTPRF-201ENST00000359947 SPATS2Q86XZ4 545 aaKnown RBP16.42■□□□□ 0.22
PTPRF-201ENST00000359947 SYT2Q8N9I0 419 aaPredicted RBP16.42■□□□□ 0.22
PTPRF-201ENST00000359947 SCFD2Q8WU76 684 aa16.42■□□□□ 0.22
PTPRF-201ENST00000359947 PI4K2AQ9BTU6 479 aa16.42■□□□□ 0.22
PTPRF-201ENST00000359947 TEX12Q9BXU0 123 aa16.42■□□□□ 0.22
PTPRF-201ENST00000359947 ENTPD3O75355 529 aa16.42■□□□□ 0.22
PTPRF-201ENST00000359947 ZFXP17010 805 aaPredicted RBP16.42■□□□□ 0.22
PTPRF-201ENST00000359947 ESRRGP62508 458 aa16.42■□□□□ 0.22
PTPRF-201ENST00000359947 ALX1Q15699 326 aa16.42■□□□□ 0.22
PTPRF-201ENST00000359947 TMCO5AQ8N6Q1 288 aa16.42■□□□□ 0.22
PTPRF-201ENST00000359947 SLC38A7Q9NVC3 462 aa16.42■□□□□ 0.22
PTPRF-201ENST00000359947 HDAC6Q9UBN7 1215 aa16.42■□□□□ 0.22
PTPRF-201ENST00000359947 CD4P01730 458 aa16.42■□□□□ 0.22
PTPRF-201ENST00000359947 APRTP07741 180 aa16.42■□□□□ 0.22
PTPRF-201ENST00000359947 CCDC137Q6PK04 289 aaKnown RBP16.42■□□□□ 0.22
PTPRF-201ENST00000359947 AGPAT1Q99943 283 aa16.42■□□□□ 0.22
PTPRF-201ENST00000359947 FBXO28Q9NVF7 368 aa16.42■□□□□ 0.22
PTPRF-201ENST00000359947 LRRC74AQ0VAA2 488 aa16.42■□□□□ 0.22
PTPRF-201ENST00000359947 KCNB1Q14721 858 aa16.42■□□□□ 0.22
PTPRF-201ENST00000359947 TMED8Q6PL24 325 aaPredicted RBP16.42■□□□□ 0.22
PTPRF-201ENST00000359947 MOV10L1Q9BXT6 1211 aaKnown RBP16.42■□□□□ 0.22
PTPRF-201ENST00000359947 GLI2P10070 1586 aa16.42■□□□□ 0.22
PTPRF-201ENST00000359947 GOLGA8RI6L899 631 aa16.42■□□□□ 0.22
PTPRF-201ENST00000359947 PDHBP11177 359 aa16.42■□□□□ 0.22
PTPRF-201ENST00000359947 NCAM1P13591 858 aa16.42■□□□□ 0.22
PTPRF-201ENST00000359947 WASHC5Q12768 1159 aa16.42■□□□□ 0.22
PTPRF-201ENST00000359947 EFTUD2Q15029 972 aaKnown RBP eCLIP16.42■□□□□ 0.223e-6■■■■□ 20.7
PTPRF-201ENST00000359947 SV2CQ496J9 727 aa16.42■□□□□ 0.22
PTPRF-201ENST00000359947 PKN3Q6P5Z2 889 aa16.42■□□□□ 0.22
PTPRF-201ENST00000359947 ERLEC1Q96DZ1 483 aa16.42■□□□□ 0.22
PTPRF-201ENST00000359947 MED15Q96RN5 788 aa16.42■□□□□ 0.22
PTPRF-201ENST00000359947 EEF2KO00418 725 aaKnown RBP16.41■□□□□ 0.22
PTPRF-201ENST00000359947 HHIPL2Q6UWX4 724 aa16.41■□□□□ 0.22
PTPRF-201ENST00000359947 TRIM72Q6ZMU5 477 aa16.41■□□□□ 0.22
PTPRF-201ENST00000359947 TARBP1Q13395 1621 aaKnown RBP16.41■□□□□ 0.22
PTPRF-201ENST00000359947 H0Y626 953 aa16.41■□□□□ 0.22
PTPRF-201ENST00000359947 TEX33O43247 280 aa16.41■□□□□ 0.22
PTPRF-201ENST00000359947 MMEP08473 750 aa16.41■□□□□ 0.22
PTPRF-201ENST00000359947 DEUP1Q05D60 604 aa16.41■□□□□ 0.22
PTPRF-201ENST00000359947 ENOSF1Q7L5Y1 443 aa16.41■□□□□ 0.22
PTPRF-201ENST00000359947 AAASQ9NRG9 546 aa16.41■□□□□ 0.22
PTPRF-201ENST00000359947 TTLL13PA6NNM8 815 aa16.41■□□□□ 0.22
PTPRF-201ENST00000359947 CTIFO43310 598 aaKnown RBP16.41■□□□□ 0.22
PTPRF-201ENST00000359947 HIST1H2AGP0C0S8 130 aaPredicted RBP16.41■□□□□ 0.22
PTPRF-201ENST00000359947 HIST1H2ADP20671 130 aa16.41■□□□□ 0.22
PTPRF-201ENST00000359947 KLHL38Q2WGJ6 581 aa16.41■□□□□ 0.22
PTPRF-201ENST00000359947 HIST1H2AHQ96KK5 128 aa16.41■□□□□ 0.22
PTPRF-201ENST00000359947 HIST1H2AJQ99878 128 aa16.41■□□□□ 0.22
PTPRF-201ENST00000359947 H2AFJQ9BTM1 129 aa16.41■□□□□ 0.22
PTPRF-201ENST00000359947 SOX11P35716 441 aa16.41■□□□□ 0.22
PTPRF-201ENST00000359947 NOTUMQ6P988 496 aa16.41■□□□□ 0.22
PTPRF-201ENST00000359947 RGL2O15211 777 aa16.41■□□□□ 0.22
PTPRF-201ENST00000359947 EIF3BP55884 814 aaKnown RBP16.41■□□□□ 0.22
PTPRF-201ENST00000359947 MTM1Q13496 603 aa16.41■□□□□ 0.22
PTPRF-201ENST00000359947 ARMC6Q6NXE6 501 aa16.41■□□□□ 0.22
PTPRF-201ENST00000359947 SLC25A13Q9UJS0 675 aa16.41■□□□□ 0.22
PTPRF-201ENST00000359947 GCKP35557 465 aa16.41■□□□□ 0.22
PTPRF-201ENST00000359947 MAP2K2P36507 400 aa16.41■□□□□ 0.22
PTPRF-201ENST00000359947 GOLGA7BQ2TAP0 167 aa16.41■□□□□ 0.22
PTPRF-201ENST00000359947 FAM118BQ9BPY3 351 aa16.41■□□□□ 0.22
PTPRF-201ENST00000359947 STXBP3O00186 592 aa16.4■□□□□ 0.22
PTPRF-201ENST00000359947 HLA-DPA1P20036 260 aa16.4■□□□□ 0.22
PTPRF-201ENST00000359947 DHX40Q8IX18 779 aaKnown RBP16.4■□□□□ 0.22
PTPRF-201ENST00000359947 TET3O43151 1660 aa16.4■□□□□ 0.22
PTPRF-201ENST00000359947 PNPLA7Q6ZV29 1317 aa16.4■□□□□ 0.22
PTPRF-201ENST00000359947 NDUFS3O75489 264 aa16.4■□□□□ 0.22
PTPRF-201ENST00000359947 SETSIPP0DME0 302 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms