RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 R3HDM2Q9Y2K5 976 aaKnown RBP12.7□□□□□ -0.38
USP1-201ENST00000339950 TJP1Q07157 1748 aa12.7□□□□□ -0.38
USP1-201ENST00000339950 SUN1O94901 812 aa12.7□□□□□ -0.38
USP1-201ENST00000339950 UBOX5O94941 541 aa12.7□□□□□ -0.38
USP1-201ENST00000339950 CPA2P48052 419 aa12.7□□□□□ -0.38
USP1-201ENST00000339950 RGS7P49802 495 aa12.7□□□□□ -0.38
USP1-201ENST00000339950 NRLP54845 237 aa12.7□□□□□ -0.38
USP1-201ENST00000339950 PSMC5P62195 406 aa12.7□□□□□ -0.38
USP1-201ENST00000339950 ZNF662Q6ZS27 426 aa12.7□□□□□ -0.38
USP1-201ENST00000339950 MCF2L2Q86YR7 1114 aa12.7□□□□□ -0.38
USP1-201ENST00000339950 MSL3Q8N5Y2 521 aaKnown RBP12.7□□□□□ -0.38
USP1-201ENST00000339950 SCFD2Q8WU76 684 aa12.7□□□□□ -0.38
USP1-201ENST00000339950 TRAPPC12Q8WVT3 735 aa12.7□□□□□ -0.38
USP1-201ENST00000339950 PIK3R5Q8WYR1 880 aa12.7□□□□□ -0.38
USP1-201ENST00000339950 WNK4Q96J92 1243 aa12.7□□□□□ -0.38
USP1-201ENST00000339950 RIPK3Q9Y572 518 aa12.7□□□□□ -0.38
USP1-201ENST00000339950 PDHA1P08559 390 aa12.69□□□□□ -0.38
USP1-201ENST00000339950 CFHP08603 1231 aa12.69□□□□□ -0.38
USP1-201ENST00000339950 SPIRE1Q08AE8 756 aa12.69□□□□□ -0.38
USP1-201ENST00000339950 TMEM62Q0P6H9 643 aa12.69□□□□□ -0.38
USP1-201ENST00000339950 SEMA3FQ13275 785 aa12.69□□□□□ -0.38
USP1-201ENST00000339950 RHPN2Q8IUC4 686 aa12.69□□□□□ -0.38
USP1-201ENST00000339950 PARP9Q8IXQ6 854 aa12.69□□□□□ -0.38
USP1-201ENST00000339950 LRRC57Q8N9N7 239 aa12.69□□□□□ -0.38
USP1-201ENST00000339950 C1orf131Q8NDD1 294 aaKnown RBP12.69□□□□□ -0.38
USP1-201ENST00000339950 KREMEN1Q96MU8 473 aa12.69□□□□□ -0.38
USP1-201ENST00000339950 TMEM121Q9BTD3 319 aa12.69□□□□□ -0.38
USP1-201ENST00000339950 ECT2Q9H8V3 914 aa12.69□□□□□ -0.38
USP1-201ENST00000339950 FBXO40Q9UH90 709 aa12.69□□□□□ -0.38
USP1-201ENST00000339950 TBX20Q9UMR3 447 aa12.69□□□□□ -0.38
USP1-201ENST00000339950 SLC16A3O15427 465 aaKnown RBP12.69□□□□□ -0.38
USP1-201ENST00000339950 SCTRP47872 440 aa12.69□□□□□ -0.38
USP1-201ENST00000339950 PRKCEQ02156 737 aa12.69□□□□□ -0.38
USP1-201ENST00000339950 ZBTB41Q5SVQ8 909 aa12.69□□□□□ -0.38
USP1-201ENST00000339950 AP1ARQ63HQ0 302 aa12.69□□□□□ -0.38
USP1-201ENST00000339950 SCYL3Q8IZE3 742 aa12.69□□□□□ -0.38
USP1-201ENST00000339950 EPS8L1Q8TE68 723 aa12.69□□□□□ -0.38
USP1-201ENST00000339950 SPOCK2Q92563 424 aa12.69□□□□□ -0.38
USP1-201ENST00000339950 ATP6V0A1Q93050 837 aa12.69□□□□□ -0.38
USP1-201ENST00000339950 CARD9Q9H257 536 aa12.69□□□□□ -0.38
USP1-201ENST00000339950 SEPT10Q9P0V9 454 aa12.69□□□□□ -0.38
USP1-201ENST00000339950 PCDHA10Q9Y5I2 948 aa12.69□□□□□ -0.38
USP1-201ENST00000339950 TRPM3Q9HCF6 1732 aaPredicted RBP12.69□□□□□ -0.38
USP1-201ENST00000339950 SPDYE2BA6NHP3 402 aa12.69□□□□□ -0.38
USP1-201ENST00000339950 YDJCA8MPS7 323 aa12.69□□□□□ -0.38
USP1-201ENST00000339950 TBX3O15119 743 aa12.69□□□□□ -0.38
USP1-201ENST00000339950 SPDYE6P0CI01 402 aa12.69□□□□□ -0.38
USP1-201ENST00000339950 RAP1GAPP47736 663 aa12.69□□□□□ -0.38
USP1-201ENST00000339950 HIRAP54198 1017 aaPredicted RBP12.69□□□□□ -0.38
USP1-201ENST00000339950 RNASELQ05823 741 aaKnown RBP12.69□□□□□ -0.38
USP1-201ENST00000339950 C1orf228Q6PIY5 440 aa12.69□□□□□ -0.38
USP1-201ENST00000339950 EPM2AIP1Q7L775 607 aaPredicted RBP12.69□□□□□ -0.38
USP1-201ENST00000339950 LRRC8CQ8TDW0 803 aa12.69□□□□□ -0.38
USP1-201ENST00000339950 SYTL5Q8TDW5 730 aaPredicted RBP12.69□□□□□ -0.38
USP1-201ENST00000339950 SLC13A1Q9BZW2 595 aa12.69□□□□□ -0.38
USP1-201ENST00000339950 PARP2Q9UGN5 583 aa12.69□□□□□ -0.38
USP1-201ENST00000339950 PNMA3Q9UL41 463 aa12.69□□□□□ -0.38
USP1-201ENST00000339950 MYH7P12883 1935 aa12.69□□□□□ -0.38
USP1-201ENST00000339950 DNM1LO00429 736 aa12.68□□□□□ -0.38
USP1-201ENST00000339950 DPEP1P16444 411 aa12.68□□□□□ -0.38
USP1-201ENST00000339950 ITIH3Q06033 890 aa12.68□□□□□ -0.38
USP1-201ENST00000339950 IFRD2Q12894 506 aaPredicted RBP12.68□□□□□ -0.38
USP1-201ENST00000339950 Q4G0T1 1027 aa12.68□□□□□ -0.38
USP1-201ENST00000339950 ROBO1Q9Y6N7 1651 aa12.68□□□□□ -0.38
USP1-201ENST00000339950 CDH8P55286 799 aa12.68□□□□□ -0.38
USP1-201ENST00000339950 NLRP11P59045 1033 aaKnown RBP12.68□□□□□ -0.38
USP1-201ENST00000339950 PTENP60484 403 aa12.68□□□□□ -0.38
USP1-201ENST00000339950 SKOR1P84550 965 aa12.68□□□□□ -0.38
USP1-201ENST00000339950 CNTN2Q02246 1040 aa12.68□□□□□ -0.38
USP1-201ENST00000339950 SLC20A2Q08357 652 aa12.68□□□□□ -0.38
USP1-201ENST00000339950 ADCY2Q08462 1091 aa12.68□□□□□ -0.38
USP1-201ENST00000339950 EML3Q32P44 896 aa12.68□□□□□ -0.38
USP1-201ENST00000339950 GNPTABQ3T906 1256 aa12.68□□□□□ -0.38
USP1-201ENST00000339950 CYB5D1Q6P9G0 228 aa12.68□□□□□ -0.38
USP1-201ENST00000339950 DAW1Q8N136 415 aa12.68□□□□□ -0.38
USP1-201ENST00000339950 AGR3Q8TD06 166 aa12.68□□□□□ -0.38
USP1-201ENST00000339950 ATXN7L3BQ96GX2 97 aa12.68□□□□□ -0.38
USP1-201ENST00000339950 TMEM237Q96Q45 408 aa12.68□□□□□ -0.38
USP1-201ENST00000339950 OSBPL8Q9BZF1 889 aa12.68□□□□□ -0.38
USP1-201ENST00000339950 DISP2A7MBM2 1401 aa12.68□□□□□ -0.38
USP1-201ENST00000339950 MIF4GDA9UHW6 222 aaKnown RBP12.68□□□□□ -0.38
USP1-201ENST00000339950 PODXLO00592 558 aa12.68□□□□□ -0.38
USP1-201ENST00000339950 KIAA0391O15091 583 aaKnown RBP12.68□□□□□ -0.38
USP1-201ENST00000339950 DIAPH2O60879 1101 aa12.68□□□□□ -0.38
USP1-201ENST00000339950 PSMA2P25787 234 aa12.68□□□□□ -0.38
USP1-201ENST00000339950 GTF2H1P32780 548 aa12.68□□□□□ -0.38
USP1-201ENST00000339950 BYSLQ13895 437 aaKnown RBP12.68□□□□□ -0.38
USP1-201ENST00000339950 WDR72Q3MJ13 1102 aa12.68□□□□□ -0.38
USP1-201ENST00000339950 SPATS2Q86XZ4 545 aaKnown RBP12.68□□□□□ -0.38
USP1-201ENST00000339950 RNF149Q8NC42 400 aa12.68□□□□□ -0.38
USP1-201ENST00000339950 DTX3LQ8TDB6 740 aa12.68□□□□□ -0.38
USP1-201ENST00000339950 RILPQ96NA2 401 aa12.68□□□□□ -0.38
USP1-201ENST00000339950 SHCBP1LQ9BZQ2 653 aa12.68□□□□□ -0.38
USP1-201ENST00000339950 TMX2Q9Y320 296 aa12.68□□□□□ -0.38
USP1-201ENST00000339950 CYP3A7-CYP3A51PA0A087WV96 503 aa12.67□□□□□ -0.38
USP1-201ENST00000339950 SHOX2O60902 331 aaPredicted RBP12.67□□□□□ -0.38
USP1-201ENST00000339950 CAP2P40123 477 aa12.67□□□□□ -0.38
USP1-201ENST00000339950 RPL7AP62424 266 aaKnown RBP12.67□□□□□ -0.38
USP1-201ENST00000339950 ZRSR2Q15696 482 aaKnown RBP12.67□□□□□ -0.38
USP1-201ENST00000339950 CIAPIN1Q6FI81 312 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms