RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 MCM10Q7L590 875 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 TRUB1Q8WWH5 349 aaKnown RBP4.38□□□□□ -1.71
NEDD4-201ENST00000338963 CKAP2Q8WWK9 683 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 OMA1Q96E52 524 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 ACAP3Q96P50 834 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 PPP1R10Q96QC0 940 aaKnown RBP4.38□□□□□ -1.71
NEDD4-201ENST00000338963 KLC2Q9H0B6 622 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 PABPC3Q9H361 631 aaKnown RBP4.38□□□□□ -1.71
NEDD4-201ENST00000338963 SEMA4AQ9H3S1 761 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 TRNAU1APQ9NX07 287 aaKnown RBP4.38□□□□□ -1.71
NEDD4-201ENST00000338963 TMOD2Q9NZR1 351 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 LRRIQ4A6NIV6 560 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 A6NJR5 290 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 SPDYE16A6NNV3 312 aaPredicted RBP4.38□□□□□ -1.71
NEDD4-201ENST00000338963 FOXN3O00409 490 aaPredicted RBP4.38□□□□□ -1.71
NEDD4-201ENST00000338963 ARHGEF9O43307 516 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 DDX5P17844 614 aaKnown RBP4.38□□□□□ -1.71
NEDD4-201ENST00000338963 RASA1P20936 1047 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 PSMA3P25788 255 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 ADD1P35611 737 aaKnown RBP4.38□□□□□ -1.71
NEDD4-201ENST00000338963 PRKCQQ04759 706 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 CALCOCO2Q13137 446 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 DHX34Q14147 1143 aaKnown RBP4.38□□□□□ -1.71
NEDD4-201ENST00000338963 MTF1Q14872 753 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 UBE3CQ15386 1083 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 HABP4Q5JVS0 413 aaKnown RBP4.38□□□□□ -1.71
NEDD4-201ENST00000338963 DHDDSQ86SQ9 333 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 CENPSQ8N2Z9 138 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 TGS1Q96RS0 853 aaKnown RBP4.38□□□□□ -1.71
NEDD4-201ENST00000338963 WDR12Q9GZL7 423 aaKnown RBP4.38□□□□□ -1.71
NEDD4-201ENST00000338963 C8orf33Q9H7E9 229 aaPredicted RBP4.38□□□□□ -1.71
NEDD4-201ENST00000338963 SOS2Q07890 1332 aaPredicted RBP4.38□□□□□ -1.71
NEDD4-201ENST00000338963 ATP10DQ9P241 1426 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 DAB1O75553 588 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 SEC24DO94855 1032 aaPredicted RBP4.38□□□□□ -1.71
NEDD4-201ENST00000338963 CAPN1P07384 714 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 MYBL1P10243 752 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 CARSP49589 748 aaKnown RBP4.38□□□□□ -1.71
NEDD4-201ENST00000338963 RILPL1Q5EBL4 403 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 C6orf183Q5T699 404 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 EGFLAMQ63HQ2 1017 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 FAM91A1Q658Y4 838 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 METTL2BQ6P1Q9 378 aaKnown RBP4.38□□□□□ -1.71
NEDD4-201ENST00000338963 TTC27Q6P3X3 843 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 IDO2Q6ZQW0 420 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 DCDC5Q6ZRR9 648 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 USP38Q8NB14 1042 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 ZNF420Q8TAQ5 688 aaPredicted RBP4.38□□□□□ -1.71
NEDD4-201ENST00000338963 ART5Q96L15 291 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 VPS35Q96QK1 796 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 TDRD1Q9BXT4 1180 aaKnown RBP4.38□□□□□ -1.71
NEDD4-201ENST00000338963 OR2B2Q9GZK3 357 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 PDGFDQ9GZP0 370 aaPredicted RBP4.38□□□□□ -1.71
NEDD4-201ENST00000338963 VPS4AQ9UN37 437 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 RWDD3Q9Y3V2 267 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 DNMT1P26358 1616 aaKnown RBP4.38□□□□□ -1.71
NEDD4-201ENST00000338963 ATP8B3O60423 1300 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 EIF4E1BA6NMX2 242 aaKnown RBP4.38□□□□□ -1.71
NEDD4-201ENST00000338963 AXIN1O15169 862 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 UBTFL1P0CB47 393 aaPredicted RBP4.38□□□□□ -1.71
NEDD4-201ENST00000338963 CTRB1P17538 263 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 ITIH1P19827 911 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 IGBP1P78318 339 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 SNX17Q15036 470 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 CTRB2Q6GPI1 263 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 KLHDC10Q6PID8 442 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 ZNF354CQ86Y25 554 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 OR6Y1Q8NGX8 325 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 TRAF3IP1Q8TDR0 691 aaPredicted RBP4.38□□□□□ -1.71
NEDD4-201ENST00000338963 MARVELD3Q96A59 401 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 CEP170P1Q96L14 293 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 CIB1Q99828 191 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 PRMT1Q99873 361 aaKnown RBP4.38□□□□□ -1.71
NEDD4-201ENST00000338963 APOL5Q9BWW9 433 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 GIMAP4Q9NUV9 329 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 MRGBPQ9NV56 204 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 PARVAQ9NVD7 372 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 FRMPD4Q14CM0 1322 aa4.37□□□□□ -1.71
NEDD4-201ENST00000338963 H0YJX3 145 aa4.37□□□□□ -1.71
NEDD4-201ENST00000338963 DDX3XO00571 662 aaKnown RBP eCLIP4.37□□□□□ -1.71
NEDD4-201ENST00000338963 RANBP6O60518 1105 aaKnown RBP4.37□□□□□ -1.71
NEDD4-201ENST00000338963 RAP1GAPP47736 663 aa4.37□□□□□ -1.71
NEDD4-201ENST00000338963 SLC9A3P48764 834 aa4.37□□□□□ -1.71
NEDD4-201ENST00000338963 EMP3P54852 163 aa4.37□□□□□ -1.71
NEDD4-201ENST00000338963 ERVK-24P63145 666 aa4.37□□□□□ -1.71
NEDD4-201ENST00000338963 PAK1Q13153 545 aa4.37□□□□□ -1.71
NEDD4-201ENST00000338963 SPARCL1Q14515 664 aa4.37□□□□□ -1.71
NEDD4-201ENST00000338963 ZNF846Q147U1 533 aa4.37□□□□□ -1.71
NEDD4-201ENST00000338963 EZH2Q15910 746 aaKnown RBP4.37□□□□□ -1.71
NEDD4-201ENST00000338963 AARS2Q5JTZ9 985 aaKnown RBP4.37□□□□□ -1.71
NEDD4-201ENST00000338963 RARS2Q5T160 578 aaKnown RBP4.37□□□□□ -1.71
NEDD4-201ENST00000338963 ADAMTSL2Q86TH1 951 aa4.37□□□□□ -1.71
NEDD4-201ENST00000338963 ADCK1Q86TW2 530 aa4.37□□□□□ -1.71
NEDD4-201ENST00000338963 AKAP14Q86UN6 197 aa4.37□□□□□ -1.71
NEDD4-201ENST00000338963 PCYOX1LQ8NBM8 494 aa4.37□□□□□ -1.71
NEDD4-201ENST00000338963 PTCD2Q8WV60 388 aaKnown RBP4.37□□□□□ -1.71
NEDD4-201ENST00000338963 SYMPKQ92797 1274 aaKnown RBP4.37□□□□□ -1.71
NEDD4-201ENST00000338963 RMDN3Q96TC7 470 aa4.37□□□□□ -1.71
NEDD4-201ENST00000338963 FSD1Q9BTV5 496 aa4.37□□□□□ -1.71
NEDD4-201ENST00000338963 EFHD1Q9BUP0 239 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms