RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 AP1G2O75843 785 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 PMLP29590 882 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 ADCY2Q08462 1091 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 KLC3Q6P597 504 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 MARK2Q7KZI7 788 aaKnown RBP8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 PLCZ1Q86YW0 608 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 SLF2Q8IX21 1173 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 ZGPATQ8N5A5 531 aaKnown RBP8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 C6orf50Q9HD87 102 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 DACT1Q9NYF0 836 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 MARK1Q9P0L2 795 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 PRKAB1Q9Y478 270 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 RBM7Q9Y580 266 aaKnown RBP8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 TRIM64CA6NLI5 447 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 ZNF24P17028 368 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 TMPRSS15P98073 1019 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 GUCY2DQ02846 1103 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 NDUFAF6Q330K2 333 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 ANKS3Q6ZW76 656 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 DDIASQ8IXT1 998 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 ZNF786Q8N393 782 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 DPP10Q8N608 796 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 LRRC20Q8TCA0 184 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 APOL6Q9BWW8 343 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 GGA3Q9NZ52 723 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 WWOXQ9NZC7 414 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 ING4Q9UNL4 249 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 PPIEQ9UNP9 301 aaKnown RBP8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 LRRC9Q6ZRR7 1453 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 KPNA4O00629 521 aaPredicted RBP8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 ZNF862O60290 1169 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 SKAP2O75563 359 aaPredicted RBP8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 RPL19P84098 196 aaKnown RBP8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 ORC2Q13416 577 aaPredicted RBP8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 C16orf89Q6UX73 402 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 EPHX4Q8IUS5 362 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 PHTF2Q8N3S3 785 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 DDX50Q9BQ39 737 aaKnown RBP8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 AP1M1Q9BXS5 423 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 KIAA1586Q9HCI6 787 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 ETAA1Q9NY74 926 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 HDAC6Q9UBN7 1215 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 AGAP1Q9UPQ3 857 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 KDM4BO94953 1096 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 VDRP11473 427 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 ZSCAN20P17040 1043 aaPredicted RBP8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 SDSP20132 328 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 ITGALP20701 1170 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 PIK3CBP42338 1070 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 TECP42680 631 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 YARSP54577 528 aaKnown RBP8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 NCALDP61601 193 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 TYRO3Q06418 890 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 C5orf22Q49AR2 442 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 FOXRED2Q8IWF2 684 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 COL26A1Q96A83 441 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 CROTQ9UKG9 612 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 UTP18Q9Y5J1 556 aaKnown RBP eCLIP8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 MINK1Q8N4C8 1332 aaPredicted RBP8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 ZSCAN5BA6NJL1 495 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 CRTAMO95727 393 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 HMBSP08397 361 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 MAGEA1P43355 309 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 MAPK12P53778 367 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 CACNB2Q08289 660 aaPredicted RBP8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 VPS72Q15906 364 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 SMYD5Q6GMV2 418 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 MZT2BQ6NZ67 158 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 TOM1L2Q6ZVM7 507 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 MREGQ8N565 214 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 OR4C6Q8NH72 309 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 SH2B1Q9NRF2 756 aaPredicted RBP8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 DCTN4Q9UJW0 460 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 TIPRLO75663 272 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 KCNH1O95259 989 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 TAC1P20366 129 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 PRIM1P49642 420 aaKnown RBP8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 MAPK10P53779 464 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 GNAI1P63096 354 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 MAP3K12Q12852 859 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 TRPM8Q7Z2W7 1104 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 ANKRD13AQ8IZ07 590 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 AUTS2Q8WXX7 1259 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 EME1Q96AY2 570 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 MAGED4Q96JG8 741 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 BRD9Q9H8M2 597 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 CCDC154A6NI56 674 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 TCN1P20061 433 aaPredicted RBP8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 RFC4P35249 363 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 STXBP1P61764 594 aaKnown RBP8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 ETF1P62495 437 aaKnown RBP8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 MORC3Q14149 939 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 SQLEQ14534 574 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 MINDY4Q4G0A6 757 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 TAF1BQ53T94 588 aaPredicted RBP8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 C6orf10Q5SRN2 563 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 LIN54Q6MZP7 749 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 MFSD6Q6ZSS7 791 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 NET1Q7Z628 596 aaPredicted RBP8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 SPATA6LQ8N4H0 392 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms