RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.95□□□□□ -0.5
PTPN4-201ENST00000263708 TM6SF1Q9BZW5 370 aa11.95□□□□□ -0.5
PTPN4-201ENST00000263708 ALOX15P16050 662 aaPredicted RBP11.95□□□□□ -0.5
PTPN4-201ENST00000263708 ZNF746Q6NUN9 644 aaPredicted RBP11.95□□□□□ -0.5
PTPN4-201ENST00000263708 BTN2A1Q7KYR7 527 aa11.95□□□□□ -0.5
PTPN4-201ENST00000263708 MIER2Q8N344 545 aa11.95□□□□□ -0.5
PTPN4-201ENST00000263708 ZNF512Q96ME7 567 aaPredicted RBP11.95□□□□□ -0.5
PTPN4-201ENST00000263708 GOLGA8TH3BQL2 631 aa11.95□□□□□ -0.5
PTPN4-201ENST00000263708 SOX6P35712 828 aa11.95□□□□□ -0.5
PTPN4-201ENST00000263708 PRELPP51888 382 aa11.95□□□□□ -0.5
PTPN4-201ENST00000263708 CSNK2BP67870 215 aa11.95□□□□□ -0.5
PTPN4-201ENST00000263708 GSTA3Q16772 222 aa11.95□□□□□ -0.5
PTPN4-201ENST00000263708 USP33Q8TEY7 942 aa11.95□□□□□ -0.5
PTPN4-201ENST00000263708 ZSWIM6Q9HCJ5 1215 aa11.95□□□□□ -0.5
PTPN4-201ENST00000263708 TMED10P49755 219 aaKnown RBP11.95□□□□□ -0.5
PTPN4-201ENST00000263708 OSBPL6Q9BZF3 934 aa11.95□□□□□ -0.5
PTPN4-201ENST00000263708 EPN3Q9H201 632 aa11.95□□□□□ -0.5
PTPN4-201ENST00000263708 KIAA1586Q9HCI6 787 aa11.95□□□□□ -0.5
PTPN4-201ENST00000263708 ERVK-10P10266 1014 aa11.95□□□□□ -0.5
PTPN4-201ENST00000263708 NCAPHQ15003 741 aa11.95□□□□□ -0.5
PTPN4-201ENST00000263708 PABPC5Q96DU9 382 aaKnown RBP11.95□□□□□ -0.5
PTPN4-201ENST00000263708 PAGE5Q96GU1 130 aa11.95□□□□□ -0.5
PTPN4-201ENST00000263708 C11orf57Q6ZUT1 292 aaPredicted RBP11.95□□□□□ -0.5
PTPN4-201ENST00000263708 NPHS2Q9NP85 383 aa11.95□□□□□ -0.5
PTPN4-201ENST00000263708 PARD3Q8TEW0 1356 aa11.95□□□□□ -0.5
PTPN4-201ENST00000263708 NR3C1P04150 777 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 MYL2P10916 166 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 CDC27P30260 824 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 CSTF3Q12996 717 aaKnown RBP11.94□□□□□ -0.5
PTPN4-201ENST00000263708 STKLD1Q8NE28 680 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 POLR3AO14802 1390 aaPredicted RBP11.94□□□□□ -0.5
PTPN4-201ENST00000263708 ACTN3Q08043 901 aaPredicted RBP11.94□□□□□ -0.5
PTPN4-201ENST00000263708 IRAK1BP1Q5VVH5 260 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 MCPH1Q8NEM0 835 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 WRNIP1Q96S55 665 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 ORAI2Q96SN7 254 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 KIFC1Q9BW19 673 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 HOXC10Q9NYD6 342 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 DCDC2Q9UHG0 476 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 F8W810 466 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 GSTM1P09488 218 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 EIF3EP60228 445 aaKnown RBP11.94□□□□□ -0.5
PTPN4-201ENST00000263708 SLC25A41Q8N5S1 370 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 GPT2Q8TD30 523 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 PRMT1Q99873 361 aaKnown RBP11.94□□□□□ -0.5
PTPN4-201ENST00000263708 MCM8Q9UJA3 840 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 GYS1P13807 737 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 KCNA6P17658 529 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 GYS2P54840 703 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 SLC44A2Q8IWA5 706 aaPredicted RBP11.94□□□□□ -0.5
PTPN4-201ENST00000263708 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.94□□□□□ -0.5
PTPN4-201ENST00000263708 DTX3LQ8TDB6 740 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 YWHAQP27348 245 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 GGCXP38435 758 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 PLA2G4AP47712 749 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 ZRANB3Q5FWF4 1079 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 BHMTQ93088 406 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 GPR63Q9BZJ6 419 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 MTMR6Q9Y217 621 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 FCER1AP12319 257 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 GTF2E2P29084 291 aaKnown RBP11.94□□□□□ -0.5
PTPN4-201ENST00000263708 VAMP7P51809 220 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 SLC39A14Q15043 492 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 NFIL3Q16649 462 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 AKIRIN2Q53H80 203 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 DPP10Q8N608 796 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 SEPT3Q9UH03 358 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 PIN4Q9Y237 131 aaKnown RBP11.94□□□□□ -0.5
PTPN4-201ENST00000263708 SRP72O76094 671 aaKnown RBP11.94□□□□□ -0.5
PTPN4-201ENST00000263708 CCT7Q99832 543 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 FHOD1Q9Y613 1164 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 SPACA6W5XKT8 324 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 MYBP10242 640 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 ETFBP38117 255 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 PRIM2P49643 509 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 VSNL1P62760 191 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 PPP2R2AP63151 447 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 POTEEQ6S8J3 1075 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 C16orf89Q6UX73 402 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 NEK10Q6ZWH5 1172 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 C2orf40Q9H1Z8 148 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 PARVAQ9NVD7 372 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 GH2P01242 217 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 APRTP07741 180 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 KCNQ4P56696 695 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 SYBUQ9NX95 663 aa11.94□□□□□ -0.5
PTPN4-201ENST00000263708 SYNCRIPO60506 623 aaKnown RBP11.93□□□□□ -0.5
PTPN4-201ENST00000263708 MTRF1O75570 445 aaKnown RBP11.93□□□□□ -0.5
PTPN4-201ENST00000263708 DGKIO75912 1065 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 RXRBP28702 533 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 CNTN1Q12860 1018 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 WNK4Q96J92 1243 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 ZNF304Q9HCX3 659 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 CYP2D7A0A087X1C5 515 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 TRAPPC3O43617 180 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 FGFR4P22455 802 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 SWSAP1Q6NVH7 229 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 PADI6Q6TGC4 694 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 PARP9Q8IXQ6 854 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 XXYLT1Q8NBI6 393 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms