RNA–Protein interactions for RNA: ENST00000253754.7

PDLIM4-201, Transcript of PDZ and LIM domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM4, Length 2,282 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-201ENST00000253754 PTPN18Q99952 460 aa20.06■□□□□ 0.8
PDLIM4-201ENST00000253754 TARS2Q9BW92 718 aaKnown RBP20.06■□□□□ 0.8
PDLIM4-201ENST00000253754 AGO2Q9UKV8 859 aaKnown RBP20.06■□□□□ 0.8
PDLIM4-201ENST00000253754 SLC45A1Q9Y2W3 748 aa20.06■□□□□ 0.8
PDLIM4-201ENST00000253754 GSTTP1A0A1W2PQM5 241 aa20.05■□□□□ 0.8
PDLIM4-201ENST00000253754 CYP1A2P05177 515 aa20.05■□□□□ 0.8
PDLIM4-201ENST00000253754 YY1P25490 414 aa20.05■□□□□ 0.8
PDLIM4-201ENST00000253754 DRP2Q13474 957 aa20.05■□□□□ 0.8
PDLIM4-201ENST00000253754 SCARA3Q6AZY7 606 aa20.05■□□□□ 0.8
PDLIM4-201ENST00000253754 ANKRD23Q86SG2 305 aa20.05■□□□□ 0.8
PDLIM4-201ENST00000253754 DEPTORQ8TB45 409 aa20.05■□□□□ 0.8
PDLIM4-201ENST00000253754 FARP2O94887 1054 aaPredicted RBP20.05■□□□□ 0.8
PDLIM4-201ENST00000253754 PEX5P50542 639 aa20.05■□□□□ 0.8
PDLIM4-201ENST00000253754 DR1Q01658 176 aa20.05■□□□□ 0.8
PDLIM4-201ENST00000253754 C2CD6Q53TS8 623 aa20.05■□□□□ 0.8
PDLIM4-201ENST00000253754 UBL4BQ8N7F7 174 aa20.05■□□□□ 0.8
PDLIM4-201ENST00000253754 ATP8B4Q8TF62 1192 aa20.05■□□□□ 0.8
PDLIM4-201ENST00000253754 GTF3C2Q8WUA4 911 aaPredicted RBP20.05■□□□□ 0.8
PDLIM4-201ENST00000253754 SLC7A3Q8WY07 619 aa20.05■□□□□ 0.8
PDLIM4-201ENST00000253754 C18orf8Q96DM3 657 aa20.05■□□□□ 0.8
PDLIM4-201ENST00000253754 FNBP1Q96RU3 617 aa20.05■□□□□ 0.8
PDLIM4-201ENST00000253754 C1orf112Q9NSG2 853 aa20.05■□□□□ 0.8
PDLIM4-201ENST00000253754 UTP11Q9Y3A2 253 aaKnown RBP20.05■□□□□ 0.8
PDLIM4-201ENST00000253754 MCM3APO60318 1980 aa20.04■□□□□ 0.8
PDLIM4-201ENST00000253754 DNAJC25-GNG10A0A024R161 153 aa20.04■□□□□ 0.8
PDLIM4-201ENST00000253754 TCRBV7S2A1N4TA0A589 114 aa20.04■□□□□ 0.8
PDLIM4-201ENST00000253754 MTA2O94776 668 aa20.04■□□□□ 0.8
PDLIM4-201ENST00000253754 HLA-DRAP01903 254 aa20.04■□□□□ 0.8
PDLIM4-201ENST00000253754 PYGMP11217 842 aa20.04■□□□□ 0.8
PDLIM4-201ENST00000253754 HARSP12081 509 aaKnown RBP20.04■□□□□ 0.8
PDLIM4-201ENST00000253754 ARL2P36404 184 aa20.04■□□□□ 0.8
PDLIM4-201ENST00000253754 GCNT1Q02742 428 aa20.04■□□□□ 0.8
PDLIM4-201ENST00000253754 GRM1Q13255 1194 aa20.04■□□□□ 0.8
PDLIM4-201ENST00000253754 BIRC3Q13489 604 aa20.04■□□□□ 0.8
PDLIM4-201ENST00000253754 PSMD6Q15008 389 aa20.04■□□□□ 0.8
PDLIM4-201ENST00000253754 LLGL1Q15334 1064 aa20.04■□□□□ 0.8
PDLIM4-201ENST00000253754 LLGL2Q6P1M3 1020 aa20.04■□□□□ 0.8
PDLIM4-201ENST00000253754 SEC14L1Q92503 715 aa20.04■□□□□ 0.8
PDLIM4-201ENST00000253754 CD101Q93033 1021 aa20.04■□□□□ 0.8
PDLIM4-201ENST00000253754 FGD4Q96M96 766 aa20.04■□□□□ 0.8
PDLIM4-201ENST00000253754 RABEP2Q9H5N1 569 aa20.04■□□□□ 0.8
PDLIM4-201ENST00000253754 GTF3C4Q9UKN8 822 aa20.04■□□□□ 0.8
PDLIM4-201ENST00000253754 TRPM7Q96QT4 1865 aa20.04■□□□□ 0.8
PDLIM4-201ENST00000253754 TTLL13PA6NNM8 815 aa20.04■□□□□ 0.8
PDLIM4-201ENST00000253754 MIF4GDA9UHW6 222 aaKnown RBP20.04■□□□□ 0.8
PDLIM4-201ENST00000253754 H0YCG3 227 aa20.04■□□□□ 0.8
PDLIM4-201ENST00000253754 K7ERI5 159 aa20.04■□□□□ 0.8
PDLIM4-201ENST00000253754 VNN1O95497 513 aa20.04■□□□□ 0.8
PDLIM4-201ENST00000253754 SSTR3P32745 418 aaPredicted RBP20.04■□□□□ 0.8
PDLIM4-201ENST00000253754 PIK3CAP42336 1068 aa20.04■□□□□ 0.8
PDLIM4-201ENST00000253754 SKIDA1Q1XH10 827 aa20.04■□□□□ 0.8
PDLIM4-201ENST00000253754 CLEC16AQ2KHT3 1053 aa20.04■□□□□ 0.8
PDLIM4-201ENST00000253754 DHX30Q7L2E3 1194 aaKnown RBP eCLIP20.04■□□□□ 0.8
PDLIM4-201ENST00000253754 EIF1ADQ8N9N8 165 aaKnown RBP20.04■□□□□ 0.8
PDLIM4-201ENST00000253754 SHCBP1Q8NEM2 672 aa20.04■□□□□ 0.8
PDLIM4-201ENST00000253754 TRIM7Q9C029 511 aa20.04■□□□□ 0.8
PDLIM4-201ENST00000253754 IGKV6D-21A0A0A0MT36 114 aa20.03■□□□□ 0.8
PDLIM4-201ENST00000253754 GOLGA6L10A0A0M3HER8 536 aa20.03■□□□□ 0.8
PDLIM4-201ENST00000253754 SPOPO43791 374 aa20.03■□□□□ 0.8
PDLIM4-201ENST00000253754 SHOX2O60902 331 aaPredicted RBP20.03■□□□□ 0.8
PDLIM4-201ENST00000253754 RPS6KA5O75582 802 aa20.03■□□□□ 0.8
PDLIM4-201ENST00000253754 C4BPAP04003 597 aaKnown RBP20.03■□□□□ 0.8
PDLIM4-201ENST00000253754 NAMPTP43490 491 aa20.03■□□□□ 0.8
PDLIM4-201ENST00000253754 ATP1A2P50993 1020 aa20.03■□□□□ 0.8
PDLIM4-201ENST00000253754 CLDN10P78369 228 aa20.03■□□□□ 0.8
PDLIM4-201ENST00000253754 CCNA1P78396 465 aa20.03■□□□□ 0.8
PDLIM4-201ENST00000253754 LY6KQ17RY6 165 aa20.03■□□□□ 0.8
PDLIM4-201ENST00000253754 ZACNQ401N2 412 aa20.03■□□□□ 0.8
PDLIM4-201ENST00000253754 CEP85LQ5SZL2 805 aa20.03■□□□□ 0.8
PDLIM4-201ENST00000253754 ACAD10Q6JQN1 1059 aa20.03■□□□□ 0.8
PDLIM4-201ENST00000253754 PRELID2Q8N945 189 aa20.03■□□□□ 0.8
PDLIM4-201ENST00000253754 CPA5Q8WXQ8 436 aa20.03■□□□□ 0.8
PDLIM4-201ENST00000253754 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP20.03■□□□□ 0.8
PDLIM4-201ENST00000253754 RPS6KC1Q96S38 1066 aa20.03■□□□□ 0.8
PDLIM4-201ENST00000253754 NAP1L3Q99457 506 aaPredicted RBP20.03■□□□□ 0.8
PDLIM4-201ENST00000253754 RBAKQ9NYW8 714 aaPredicted RBP20.03■□□□□ 0.8
PDLIM4-201ENST00000253754 CNOT8Q9UFF9 292 aaKnown RBP20.03■□□□□ 0.8
PDLIM4-201ENST00000253754 STYXL1Q9Y6J8 313 aa20.03■□□□□ 0.8
PDLIM4-201ENST00000253754 ZNF157P51786 506 aaPredicted RBP20.02■□□□□ 0.8
PDLIM4-201ENST00000253754 APOBEC3GQ9HC16 384 aaKnown RBP20.02■□□□□ 0.8
PDLIM4-201ENST00000253754 MYH9P35579 1960 aaKnown RBP20.02■□□□□ 0.8
PDLIM4-201ENST00000253754 CFHP08603 1231 aa20.02■□□□□ 0.8
PDLIM4-201ENST00000253754 GCLCP48506 637 aaPredicted RBP20.02■□□□□ 0.8
PDLIM4-201ENST00000253754 CAPSQ13938 189 aa20.02■□□□□ 0.8
PDLIM4-201ENST00000253754 TTC27Q6P3X3 843 aa20.02■□□□□ 0.8
PDLIM4-201ENST00000253754 ZNF784Q8NCA9 323 aaPredicted RBP20.02■□□□□ 0.8
PDLIM4-201ENST00000253754 UBLCP1Q8WVY7 318 aaPredicted RBP20.02■□□□□ 0.8
PDLIM4-201ENST00000253754 MPHOSPH6Q99547 160 aaKnown RBP20.02■□□□□ 0.8
PDLIM4-201ENST00000253754 MSTO1Q9BUK6 570 aa20.02■□□□□ 0.8
PDLIM4-201ENST00000253754 CAPS2Q9BXY5 557 aa20.02■□□□□ 0.8
PDLIM4-201ENST00000253754 NIFKQ9BYG3 293 aaKnown RBP20.02■□□□□ 0.8
PDLIM4-201ENST00000253754 H0YGN5 161 aa20.01■□□□□ 0.79
PDLIM4-201ENST00000253754 CLSTN1O94985 981 aa20.01■□□□□ 0.79
PDLIM4-201ENST00000253754 MARK3P27448 753 aa20.01■□□□□ 0.79
PDLIM4-201ENST00000253754 IRAK1P51617 712 aa20.01■□□□□ 0.79
PDLIM4-201ENST00000253754 TRIM50Q86XT4 487 aa20.01■□□□□ 0.79
PDLIM4-201ENST00000253754 JAMLQ86YT9 394 aa20.01■□□□□ 0.79
PDLIM4-201ENST00000253754 CD302Q8IX05 232 aa20.01■□□□□ 0.79
PDLIM4-201ENST00000253754 NFS1Q9Y697 457 aa20.01■□□□□ 0.79
PDLIM4-201ENST00000253754 UMODL1Q5DID0 1318 aa20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms