RNA–Protein interactions for RNA: ENST00000217402.2

CHMP4B-201, Transcript of charged multivesicular body protein 4B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP4B, Length 1,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4B-201ENST00000217402 TNNI1P19237 187 aa29.53■■■□□ 2.32
CHMP4B-201ENST00000217402 CDK11BP21127 795 aaKnown RBP29.53■■■□□ 2.32
CHMP4B-201ENST00000217402 SURF1Q15526 300 aa29.53■■■□□ 2.32
CHMP4B-201ENST00000217402 PAN2Q504Q3 1202 aaKnown RBP29.53■■■□□ 2.32
CHMP4B-201ENST00000217402 NOMO2Q5JPE7 1267 aa29.53■■■□□ 2.32
CHMP4B-201ENST00000217402 URGCPQ8TCY9 931 aa29.53■■■□□ 2.32
CHMP4B-201ENST00000217402 TMC2Q8TDI7 906 aa29.53■■■□□ 2.32
CHMP4B-201ENST00000217402 CGRRF1Q99675 332 aa29.53■■■□□ 2.32
CHMP4B-201ENST00000217402 MMRN2Q9H8L6 949 aa29.53■■■□□ 2.32
CHMP4B-201ENST00000217402 ANK1P16157 1881 aa29.53■■■□□ 2.32
CHMP4B-201ENST00000217402 EEF1GP26641 437 aaKnown RBP29.53■■■□□ 2.32
CHMP4B-201ENST00000217402 TFAMQ00059 246 aaKnown RBP29.53■■■□□ 2.32
CHMP4B-201ENST00000217402 TMEM132DQ14C87 1099 aa29.53■■■□□ 2.32
CHMP4B-201ENST00000217402 USP37Q86T82 979 aa29.53■■■□□ 2.32
CHMP4B-201ENST00000217402 TRIM59Q8IWR1 403 aa29.53■■■□□ 2.32
CHMP4B-201ENST00000217402 CASD1Q96PB1 797 aa29.53■■■□□ 2.32
CHMP4B-201ENST00000217402 TMEM117Q9H0C3 514 aa29.53■■■□□ 2.32
CHMP4B-201ENST00000217402 KCNE1P15382 129 aa29.52■■■□□ 2.32
CHMP4B-201ENST00000217402 C1orf220Q5T0J3 134 aa29.52■■■□□ 2.32
CHMP4B-201ENST00000217402 HERC6Q8IVU3 1022 aa29.52■■■□□ 2.32
CHMP4B-201ENST00000217402 ZBED2Q9BTP6 218 aa29.52■■■□□ 2.32
CHMP4B-201ENST00000217402 INPPL1O15357 1258 aa29.51■■■□□ 2.31
CHMP4B-201ENST00000217402 GJB5O95377 273 aa29.51■■■□□ 2.31
CHMP4B-201ENST00000217402 WDR49Q8IV35 697 aa29.51■■■□□ 2.31
CHMP4B-201ENST00000217402 TMEM130Q8N3G9 435 aa29.51■■■□□ 2.31
CHMP4B-201ENST00000217402 OR5B17Q8NGF7 314 aa29.51■■■□□ 2.31
CHMP4B-201ENST00000217402 SLC35C1Q96A29 364 aa29.51■■■□□ 2.31
CHMP4B-201ENST00000217402 C18orf25Q96B23 403 aaPredicted RBP29.51■■■□□ 2.31
CHMP4B-201ENST00000217402 YME1L1Q96TA2 773 aa29.51■■■□□ 2.31
CHMP4B-201ENST00000217402 MTMR12Q9C0I1 747 aa29.51■■■□□ 2.31
CHMP4B-201ENST00000217402 UTP18Q9Y5J1 556 aaKnown RBP eCLIP29.51■■■□□ 2.31
CHMP4B-201ENST00000217402 THP07101 528 aa29.5■■■□□ 2.31
CHMP4B-201ENST00000217402 PRKCSHP14314 528 aaPredicted RBP29.5■■■□□ 2.31
CHMP4B-201ENST00000217402 PHOSPHO2Q8TCD6 241 aa29.5■■■□□ 2.31
CHMP4B-201ENST00000217402 PPP1R10Q96QC0 940 aaKnown RBP29.5■■■□□ 2.31
CHMP4B-201ENST00000217402 TUBGCP2Q9BSJ2 902 aa29.5■■■□□ 2.31
CHMP4B-201ENST00000217402 TBC1D13Q9NVG8 400 aa29.5■■■□□ 2.31
CHMP4B-201ENST00000217402 TAB2Q9NYJ8 693 aa29.5■■■□□ 2.31
CHMP4B-201ENST00000217402 TUBGCP4Q9UGJ1 667 aa29.5■■■□□ 2.31
CHMP4B-201ENST00000217402 C2CD2Q9Y426 696 aa29.5■■■□□ 2.31
CHMP4B-201ENST00000217402 TMEM191BP0C7N4 346 aa29.49■■■□□ 2.31
CHMP4B-201ENST00000217402 GUCY2FP51841 1108 aa29.49■■■□□ 2.31
CHMP4B-201ENST00000217402 RNASELQ05823 741 aaKnown RBP29.49■■■□□ 2.31
CHMP4B-201ENST00000217402 GRIK3Q13003 919 aa29.49■■■□□ 2.31
CHMP4B-201ENST00000217402 KRT31Q15323 416 aa29.49■■■□□ 2.31
CHMP4B-201ENST00000217402 ANKRD20A12PQ8NF67 263 aa29.49■■■□□ 2.31
CHMP4B-201ENST00000217402 INTS13Q9NVM9 706 aa29.49■■■□□ 2.31
CHMP4B-201ENST00000217402 DERAQ9Y315 318 aa29.49■■■□□ 2.31
CHMP4B-201ENST00000217402 COL4A6Q14031 1691 aa29.49■■■□□ 2.31
CHMP4B-201ENST00000217402 TRIP11Q15643 1979 aa29.49■■■□□ 2.31
CHMP4B-201ENST00000217402 GCLMP48507 274 aa29.49■■■□□ 2.31
CHMP4B-201ENST00000217402 PPP3CAQ08209 521 aa29.49■■■□□ 2.31
CHMP4B-201ENST00000217402 ZNF516Q92618 1163 aa29.49■■■□□ 2.31
CHMP4B-201ENST00000217402 RC3H2Q9HBD1 1191 aaKnown RBP29.49■■■□□ 2.31
CHMP4B-201ENST00000217402 HCSTQ9UBK5 93 aa29.49■■■□□ 2.31
CHMP4B-201ENST00000217402 CLDN10P78369 228 aa29.48■■■□□ 2.31
CHMP4B-201ENST00000217402 FAM109BQ6ICB4 259 aaPredicted RBP29.48■■■□□ 2.31
CHMP4B-201ENST00000217402 CHRDL2Q6WN34 429 aa29.48■■■□□ 2.31
CHMP4B-201ENST00000217402 ZNF689Q96CS4 500 aaPredicted RBP29.48■■■□□ 2.31
CHMP4B-201ENST00000217402 ANKRD36BP1Q96IX9 119 aa29.48■■■□□ 2.31
CHMP4B-201ENST00000217402 MRPL9Q9BYD2 267 aaKnown RBP29.48■■■□□ 2.31
CHMP4B-201ENST00000217402 GOLGA2P5Q9HBQ8 144 aa29.48■■■□□ 2.31
CHMP4B-201ENST00000217402 KANSL3Q9P2N6 904 aa29.48■■■□□ 2.31
CHMP4B-201ENST00000217402 UBQLN1Q9UMX0 589 aaKnown RBP29.48■■■□□ 2.31
CHMP4B-201ENST00000217402 BMP8BP34820 402 aa29.47■■■□□ 2.31
CHMP4B-201ENST00000217402 SOX4Q06945 474 aaPredicted RBP29.47■■■□□ 2.31
CHMP4B-201ENST00000217402 ENPEPQ07075 957 aa29.47■■■□□ 2.31
CHMP4B-201ENST00000217402 NAB2Q15742 525 aa29.47■■■□□ 2.31
CHMP4B-201ENST00000217402 ZBTB6Q15916 424 aa29.47■■■□□ 2.31
CHMP4B-201ENST00000217402 MAN2A1Q16706 1144 aa29.47■■■□□ 2.31
CHMP4B-201ENST00000217402 DUOXA2Q1HG44 320 aa29.47■■■□□ 2.31
CHMP4B-201ENST00000217402 NT5DC4Q86YG4 428 aa29.47■■■□□ 2.31
CHMP4B-201ENST00000217402 LRRC43Q8N309 656 aa29.47■■■□□ 2.31
CHMP4B-201ENST00000217402 CACTINQ8WUQ7 758 aaKnown RBP29.47■■■□□ 2.31
CHMP4B-201ENST00000217402 SLC38A7Q9NVC3 462 aa29.47■■■□□ 2.31
CHMP4B-201ENST00000217402 GRXCR1A8MXD5 290 aa29.46■■■□□ 2.31
CHMP4B-201ENST00000217402 PES1O00541 588 aaKnown RBP29.46■■■□□ 2.31
CHMP4B-201ENST00000217402 TNNC2P02585 160 aa29.46■■■□□ 2.31
CHMP4B-201ENST00000217402 BTG3Q14201 252 aaPredicted RBP29.46■■■□□ 2.31
CHMP4B-201ENST00000217402 ZNF280BQ86YH2 543 aa29.46■■■□□ 2.31
CHMP4B-201ENST00000217402 BEST2Q8NFU1 509 aa29.46■■■□□ 2.31
CHMP4B-201ENST00000217402 TSPAN18Q96SJ8 248 aa29.46■■■□□ 2.31
CHMP4B-201ENST00000217402 VPS16Q9H269 839 aa29.46■■■□□ 2.31
CHMP4B-201ENST00000217402 CACNG4Q9UBN1 327 aa29.46■■■□□ 2.31
CHMP4B-201ENST00000217402 LIMA1Q9UHB6 759 aaKnown RBP29.46■■■□□ 2.31
CHMP4B-201ENST00000217402 PDCD11Q14690 1871 aaKnown RBP29.46■■■□□ 2.31
CHMP4B-201ENST00000217402 RANBP2P49792 3224 aaKnown RBP29.46■■■□□ 2.31
CHMP4B-201ENST00000217402 FNDC1Q4ZHG4 1894 aaPredicted RBP29.46■■■□□ 2.31
CHMP4B-201ENST00000217402 XPOTO43592 962 aaKnown RBP29.45■■■□□ 2.31
CHMP4B-201ENST00000217402 TLL1O43897 1013 aa29.45■■■□□ 2.31
CHMP4B-201ENST00000217402 STX10O60499 249 aa29.45■■■□□ 2.31
CHMP4B-201ENST00000217402 B4GALT3O60512 393 aa29.45■■■□□ 2.31
CHMP4B-201ENST00000217402 RABGGTBP53611 331 aa29.45■■■□□ 2.31
CHMP4B-201ENST00000217402 MCCD1P59942 119 aaPredicted RBP29.45■■■□□ 2.31
CHMP4B-201ENST00000217402 HTRA4P83105 476 aaPredicted RBP29.45■■■□□ 2.31
CHMP4B-201ENST00000217402 KCNH2Q12809 1159 aa29.45■■■□□ 2.31
CHMP4B-201ENST00000217402 BIRC3Q13489 604 aa29.45■■■□□ 2.31
CHMP4B-201ENST00000217402 CASTOR2A6NHX0 329 aa29.45■■■□□ 2.3
CHMP4B-201ENST00000217402 DDHD2O94830 711 aa29.45■■■□□ 2.3
CHMP4B-201ENST00000217402 AFPP02771 609 aaKnown RBP29.45■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms