RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 LRRC34Q8IZ02 419 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 OSCP1Q8WVF1 389 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 CLEC4MQ9H2X3 399 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-220ENST00000641603 PICK1Q9NRD5 415 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 FAM53CQ9NYF3 392 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 APPL1Q9UKG1 709 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 PALLDQ8WX93 1383 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 ABHD2P08910 425 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 PDHBP11177 359 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 PCSK2P16519 638 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 TXKP42681 527 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 ACVR2BQ13705 512 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 MYBPC2Q14324 1141 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 MESDQ14696 234 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 FAM133AQ8N9E0 248 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 ENKURQ8TC29 256 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 PARD3BQ8TEW8 1205 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 PSPC1Q8WXF1 523 aaKnown RBP4.92□□□□□ -1.62
SCN1A-220ENST00000641603 NAT9Q9BTE0 207 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 MKNK1Q9BUB5 465 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 TTC7AQ9ULT0 858 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-220ENST00000641603 LEMD3Q9Y2U8 911 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 BTNL10A8MVZ5 291 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 RXRGP48443 463 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 HIF1AQ16665 826 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 ZBTB8BQ8NAP8 495 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-220ENST00000641603 ACCSQ96QU6 501 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 CCSER1Q9C0I3 900 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 NYXQ9GZU5 481 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 KCNK4Q9NYG8 393 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 RTN2O75298 545 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 CLK1P49759 484 aaKnown RBP4.92□□□□□ -1.62
SCN1A-220ENST00000641603 EPHB1P54762 984 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 ITGA1P56199 1179 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 TP53BP2Q13625 1128 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 LEMD2Q8NC56 503 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 CCDC126Q96EE4 140 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 TMEM109Q9BVC6 243 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 RRN3Q9NYV6 651 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 PSMG1O95456 288 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 HADHAP40939 763 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 AP3M2P53677 418 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 RAD23AP54725 363 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 GEMIN4P57678 1058 aaKnown RBP4.92□□□□□ -1.62
SCN1A-220ENST00000641603 NAB1Q13506 487 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 MTHFSDQ2M296 383 aaKnown RBP4.92□□□□□ -1.62
SCN1A-220ENST00000641603 MFSD4BQ5TF39 518 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 DNAJC24Q6P3W2 148 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 RAD9BQ6WBX8 426 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 DEPDC1BQ8WUY9 529 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 PHACTR3Q96KR7 559 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 CEP44Q9C0F1 390 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 IARS2Q9NSE4 1012 aaKnown RBP4.92□□□□□ -1.62
SCN1A-220ENST00000641603 SMARCAL1Q9NZC9 954 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 PHF11Q9UIL8 331 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 MAPK8IP1Q9UQF2 711 aa4.92□□□□□ -1.62
SCN1A-220ENST00000641603 ARHGEF37A1IGU5 675 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 A6NJR5 290 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 VAV1P15498 845 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 KRT20P35900 424 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 LPIN1Q14693 890 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 KRT74Q7RTS7 529 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 ZNF677Q86XU0 584 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 HDAC11Q96DB2 347 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 XAGE2Q96GT9 111 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 ADAMTS1Q9UHI8 967 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 hCG_2014768A0A024R1R8 64 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 NOP56O00567 594 aaKnown RBP4.91□□□□□ -1.62
SCN1A-220ENST00000641603 ZC3H11AO75152 810 aaKnown RBP eCLIP4.91□□□□□ -1.622e-6■□□□□ 9.4
SCN1A-220ENST00000641603 UFL1O94874 794 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 ATP2C1P98194 919 aaPredicted RBP4.91□□□□□ -1.62
SCN1A-220ENST00000641603 PTPN12Q05209 780 aaKnown RBP4.91□□□□□ -1.62
SCN1A-220ENST00000641603 TBX2Q13207 712 aaPredicted RBP4.91□□□□□ -1.62
SCN1A-220ENST00000641603 C16orf72Q14CZ0 275 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 GPATCH4Q5T3I0 446 aaKnown RBP4.91□□□□□ -1.62
SCN1A-220ENST00000641603 CDKAL1Q5VV42 579 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 CDKL3Q8IVW4 592 aaPredicted RBP4.91□□□□□ -1.62
SCN1A-220ENST00000641603 SHCBP1Q8NEM2 672 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 WDR11Q9BZH6 1224 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 PNPLA3Q9NST1 481 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 NRXN1Q9ULB1 1477 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 CPDO75976 1380 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 ZNF233A6NK53 670 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 GAS2O43903 313 aaKnown RBP4.91□□□□□ -1.62
SCN1A-220ENST00000641603 EYA4O95677 639 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 ALBP02768 609 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 ZNF18P17022 549 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 KCNQ4P56696 695 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 NAA20P61599 178 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 ZCCHC7Q8N3Z6 543 aaKnown RBP4.91□□□□□ -1.62
SCN1A-220ENST00000641603 TTC17Q96AE7 1141 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 MRRFQ96E11 262 aaKnown RBP4.91□□□□□ -1.62
SCN1A-220ENST00000641603 B3GALT6Q96L58 329 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 DAPK2Q9UIK4 370 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 M0QX08 132 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 LIN52Q52LA3 116 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 SYCE2Q6PIF2 218 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 COPS6Q7L5N1 327 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 CCDC36Q8IYA8 594 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 EBF2Q9HAK2 575 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms