RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 NCOA5Q9HCD5 579 aaKnown RBP0.99□□□□□ -2.25
VPS35-212ENST00000640313 TMEM260Q9NX78 707 aa0.99□□□□□ -2.25
VPS35-212ENST00000640313 ZBTB32Q9Y2Y4 487 aaPredicted RBP0.99□□□□□ -2.25
VPS35-212ENST00000640313 COQ6Q9Y2Z9 468 aa0.99□□□□□ -2.25
VPS35-212ENST00000640313 TNPO3Q9Y5L0 923 aaKnown RBP0.99□□□□□ -2.25
VPS35-212ENST00000640313 HMCN1Q96RW7 5635 aa0.98□□□□□ -2.25
VPS35-212ENST00000640313 CYP2D7A0A087X1C5 515 aa0.98□□□□□ -2.25
VPS35-212ENST00000640313 TRBV23-1A0A0A0MS06 115 aa0.98□□□□□ -2.25
VPS35-212ENST00000640313 FAM90A8PA6NJQ4 464 aa0.98□□□□□ -2.25
VPS35-212ENST00000640313 GCOM1H8Y6P7 765 aaPredicted RBP0.98□□□□□ -2.25
VPS35-212ENST00000640313 NTN3O00634 580 aaPredicted RBP0.98□□□□□ -2.25
VPS35-212ENST00000640313 SOCS2O14508 198 aa0.98□□□□□ -2.25
VPS35-212ENST00000640313 YY2O15391 372 aa0.98□□□□□ -2.25
VPS35-212ENST00000640313 SEC24DO94855 1032 aaPredicted RBP0.98□□□□□ -2.25
VPS35-212ENST00000640313 PRPF6O94906 941 aaKnown RBP0.98□□□□□ -2.25
VPS35-212ENST00000640313 GASTP01350 101 aa0.98□□□□□ -2.25
VPS35-212ENST00000640313 TUBB4AP04350 444 aa0.98□□□□□ -2.25
VPS35-212ENST00000640313 ALPLP05186 524 aa0.98□□□□□ -2.25
VPS35-212ENST00000640313 FAM90A13PP0C7W8 464 aa0.98□□□□□ -2.25
VPS35-212ENST00000640313 FAM90A24PP0C7X0 464 aa0.98□□□□□ -2.25
VPS35-212ENST00000640313 SRGNP10124 158 aa0.98□□□□□ -2.25
VPS35-212ENST00000640313 KCNA6P17658 529 aa0.98□□□□□ -2.25
VPS35-212ENST00000640313 FGFR4P22455 802 aa0.98□□□□□ -2.25
VPS35-212ENST00000640313 GCSHP23434 173 aa0.98□□□□□ -2.25
VPS35-212ENST00000640313 MPGP29372 298 aa0.98□□□□□ -2.25
VPS35-212ENST00000640313 KIF11P52732 1056 aa0.98□□□□□ -2.25
VPS35-212ENST00000640313 CLRN1P58418 232 aa0.98□□□□□ -2.25
VPS35-212ENST00000640313 HILS1P60008 231 aa0.98□□□□□ -2.25
VPS35-212ENST00000640313 NANOS2P60321 138 aaKnown RBP0.98□□□□□ -2.25
VPS35-212ENST00000640313 HTRA4P83105 476 aaPredicted RBP0.98□□□□□ -2.25
VPS35-212ENST00000640313 PTPRRQ15256 657 aa0.98□□□□□ -2.25
VPS35-212ENST00000640313 UBE3CQ15386 1083 aa0.98□□□□□ -2.25
VPS35-212ENST00000640313 TRIP6Q15654 476 aaKnown RBP0.98□□□□□ -2.25
VPS35-212ENST00000640313 CCDC27Q2M243 656 aa0.98□□□□□ -2.25
VPS35-212ENST00000640313 KRT71Q3SY84 523 aa0.98□□□□□ -2.25
VPS35-212ENST00000640313 SUPT20HL1Q3ZLR7 823 aa0.98□□□□□ -2.25
VPS35-212ENST00000640313 CCDC178Q5BJE1 867 aa0.98□□□□□ -2.25
VPS35-212ENST00000640313 C19orf54Q5BKX5 351 aa0.98□□□□□ -2.25
VPS35-212ENST00000640313 FAM47AQ5JRC9 791 aa0.98□□□□□ -2.25
VPS35-212ENST00000640313 ATXN7L2Q5T6C5 722 aaPredicted RBP0.98□□□□□ -2.25
VPS35-212ENST00000640313 KIAA1841Q6NSI8 718 aa0.98□□□□□ -2.25
VPS35-212ENST00000640313 TIGD7Q6NT04 549 aaPredicted RBP0.98□□□□□ -2.25
VPS35-212ENST00000640313 UNQ6494/PRO21346Q6UXR6 183 aa0.98□□□□□ -2.25
VPS35-212ENST00000640313 IRF2BP2Q7Z5L9 587 aa0.98□□□□□ -2.25
VPS35-212ENST00000640313 PEG10Q86TG7 708 aaKnown RBP0.98□□□□□ -2.25
VPS35-212ENST00000640313 PHYKPLQ8IUZ5 450 aa0.98□□□□□ -2.25
VPS35-212ENST00000640313 SSH3Q8TE77 659 aa0.98□□□□□ -2.25
VPS35-212ENST00000640313 NR4A3Q92570 626 aa0.98□□□□□ -2.25
VPS35-212ENST00000640313 ZNF428Q96B54 188 aa0.98□□□□□ -2.25
VPS35-212ENST00000640313 FUBP3Q96I24 572 aaKnown RBP eCLIP0.98□□□□□ -2.25
VPS35-212ENST00000640313 HAPLN3Q96S86 360 aa0.98□□□□□ -2.25
VPS35-212ENST00000640313 CDC5LQ99459 802 aaKnown RBP0.98□□□□□ -2.25
VPS35-212ENST00000640313 TRMOQ9BU70 441 aa0.98□□□□□ -2.25
VPS35-212ENST00000640313 SPATA9Q9BWV2 254 aa0.98□□□□□ -2.25
VPS35-212ENST00000640313 PRSS22Q9GZN4 317 aa0.98□□□□□ -2.25
VPS35-212ENST00000640313 REXO4Q9GZR2 422 aaKnown RBP0.98□□□□□ -2.25
VPS35-212ENST00000640313 SLTMQ9NWH9 1034 aaKnown RBP eCLIP0.98□□□□□ -2.25
VPS35-212ENST00000640313 FAM30AQ9NZY2 134 aa0.98□□□□□ -2.25
VPS35-212ENST00000640313 PADI4Q9UM07 663 aa0.98□□□□□ -2.25
VPS35-212ENST00000640313 PROCRQ9UNN8 238 aa0.98□□□□□ -2.25
VPS35-212ENST00000640313 ICKQ9UPZ9 632 aa0.98□□□□□ -2.25
VPS35-212ENST00000640313 PCDHB1Q9Y5F3 818 aa0.98□□□□□ -2.25
VPS35-212ENST00000640313 NOTCH2Q04721 2471 aa0.97□□□□□ -2.25
VPS35-212ENST00000640313 PNPLA7Q6ZV29 1317 aa0.97□□□□□ -2.25
VPS35-212ENST00000640313 MYPNQ86TC9 1320 aa0.97□□□□□ -2.25
VPS35-212ENST00000640313 LOC101059915A0A1B0GWI6 518 aaPredicted RBP0.97□□□□□ -2.25
VPS35-212ENST00000640313 CCDC78A2IDD5 438 aa0.97□□□□□ -2.25
VPS35-212ENST00000640313 TARM1B6A8C7 271 aa0.97□□□□□ -2.25
VPS35-212ENST00000640313 MYO1FO00160 1098 aa0.97□□□□□ -2.25
VPS35-212ENST00000640313 GTPBP1O00178 669 aaKnown RBP0.97□□□□□ -2.25
VPS35-212ENST00000640313 ADCY3O60266 1144 aa0.97□□□□□ -2.25
VPS35-212ENST00000640313 DIAPH1O60610 1272 aaKnown RBP0.97□□□□□ -2.25
VPS35-212ENST00000640313 GPANK1O95872 356 aa0.97□□□□□ -2.25
VPS35-212ENST00000640313 APPP05067 770 aa0.97□□□□□ -2.25
VPS35-212ENST00000640313 SSBP05455 408 aaKnown RBP eCLIP0.97□□□□□ -2.25
VPS35-212ENST00000640313 TNFRSF1BP20333 461 aa0.97□□□□□ -2.25
VPS35-212ENST00000640313 VAMP1P23763 118 aa0.97□□□□□ -2.25
VPS35-212ENST00000640313 SREBF1P36956 1147 aa0.97□□□□□ -2.25
VPS35-212ENST00000640313 GPR15P49685 360 aa0.97□□□□□ -2.25
VPS35-212ENST00000640313 FLT3LGP49771 235 aa0.97□□□□□ -2.25
VPS35-212ENST00000640313 MECP2P51608 486 aaKnown RBP0.97□□□□□ -2.25
VPS35-212ENST00000640313 SEMA3AQ14563 771 aa0.97□□□□□ -2.25
VPS35-212ENST00000640313 DAZAP2Q15038 168 aaPredicted RBP0.97□□□□□ -2.25
VPS35-212ENST00000640313 RABEP1Q15276 862 aa0.97□□□□□ -2.25
VPS35-212ENST00000640313 SF3B3Q15393 1217 aaKnown RBP0.97□□□□□ -2.25
VPS35-212ENST00000640313 DDR2Q16832 855 aa0.97□□□□□ -2.25
VPS35-212ENST00000640313 FAM153CQ494X1 144 aa0.97□□□□□ -2.25
VPS35-212ENST00000640313 TMEM177Q53S58 311 aa0.97□□□□□ -2.25
VPS35-212ENST00000640313 CEP78Q5JTW2 689 aa0.97□□□□□ -2.25
VPS35-212ENST00000640313 FAM209AQ5JX71 171 aa0.97□□□□□ -2.25
VPS35-212ENST00000640313 MFSD14BQ5SR56 506 aa0.97□□□□□ -2.25
VPS35-212ENST00000640313 UBAP2Q5T6F2 1119 aaKnown RBP0.97□□□□□ -2.25
VPS35-212ENST00000640313 FOXR2Q6PJQ5 311 aa0.97□□□□□ -2.25
VPS35-212ENST00000640313 SLC2A7Q6PXP3 512 aa0.97□□□□□ -2.25
VPS35-212ENST00000640313 C9orf47Q6ZRZ4 202 aa0.97□□□□□ -2.25
VPS35-212ENST00000640313 MED25Q71SY5 747 aa0.97□□□□□ -2.25
VPS35-212ENST00000640313 PDZD4Q76G19 769 aaPredicted RBP0.97□□□□□ -2.25
VPS35-212ENST00000640313 MRPL10Q7Z7H8 261 aaKnown RBP0.97□□□□□ -2.25
VPS35-212ENST00000640313 NT5DC4Q86YG4 428 aa0.97□□□□□ -2.25
VPS35-212ENST00000640313 ADHFE1Q8IWW8 467 aa0.97□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms