RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 STARD6P59095 220 aa16.6■□□□□ 0.25
SYNE2-228ENST00000639659 POU5F1BQ06416 359 aa16.6■□□□□ 0.25
SYNE2-228ENST00000639659 SLC44A4Q53GD3 710 aa16.6■□□□□ 0.25
SYNE2-228ENST00000639659 NOSTRINQ8IVI9 506 aa16.6■□□□□ 0.25
SYNE2-228ENST00000639659 GPR65Q8IYL9 337 aa16.6■□□□□ 0.25
SYNE2-228ENST00000639659 LNX1Q8TBB1 728 aaPredicted RBP16.6■□□□□ 0.25
SYNE2-228ENST00000639659 PIK3R5Q8WYR1 880 aa16.6■□□□□ 0.25
SYNE2-228ENST00000639659 CXCL16Q9H2A7 254 aa16.6■□□□□ 0.25
SYNE2-228ENST00000639659 PRMT7Q9NVM4 692 aaPredicted RBP16.6■□□□□ 0.25
SYNE2-228ENST00000639659 GDAQ9Y2T3 454 aa16.6■□□□□ 0.25
SYNE2-228ENST00000639659 CACNA1AO00555 2505 aa16.59■□□□□ 0.25
SYNE2-228ENST00000639659 PTGESO14684 152 aa16.59■□□□□ 0.25
SYNE2-228ENST00000639659 N4BP3O15049 544 aa16.59■□□□□ 0.25
SYNE2-228ENST00000639659 NEMFO60524 1076 aa16.59■□□□□ 0.25
SYNE2-228ENST00000639659 C1RP00736 705 aa16.59■□□□□ 0.25
SYNE2-228ENST00000639659 ATP2B1P20020 1258 aa16.59■□□□□ 0.25
SYNE2-228ENST00000639659 RSPO4Q2I0M5 234 aaPredicted RBP16.59■□□□□ 0.25
SYNE2-228ENST00000639659 PABPC1LQ4VXU2 614 aaKnown RBP16.59■□□□□ 0.25
SYNE2-228ENST00000639659 GLRA4Q5JXX5 417 aa16.59■□□□□ 0.25
SYNE2-228ENST00000639659 AXDND1Q5T1B0 1012 aaPredicted RBP16.59■□□□□ 0.25
SYNE2-228ENST00000639659 TPRG1Q6ZUI0 275 aa16.59■□□□□ 0.25
SYNE2-228ENST00000639659 ADPGKQ9BRR6 497 aa16.59■□□□□ 0.25
SYNE2-228ENST00000639659 NFKBIZQ9BYH8 718 aa16.59■□□□□ 0.25
SYNE2-228ENST00000639659 PDZD7Q9H5P4 517 aa16.59■□□□□ 0.25
SYNE2-228ENST00000639659 TTLL13PA6NNM8 815 aa16.58■□□□□ 0.24
SYNE2-228ENST00000639659 LYPLA2O95372 231 aa16.58■□□□□ 0.24
SYNE2-228ENST00000639659 PAPLNO95428 1278 aa16.58■□□□□ 0.24
SYNE2-228ENST00000639659 PRKCBP05771 671 aa16.58■□□□□ 0.24
SYNE2-228ENST00000639659 OR1D2P34982 312 aa16.58■□□□□ 0.24
SYNE2-228ENST00000639659 PFKPQ01813 784 aa16.58■□□□□ 0.24
SYNE2-228ENST00000639659 PRKCQQ04759 706 aa16.58■□□□□ 0.24
SYNE2-228ENST00000639659 ELAVL2Q12926 359 aaKnown RBP16.58■□□□□ 0.24
SYNE2-228ENST00000639659 PRPF4BQ13523 1007 aaKnown RBP16.58■□□□□ 0.24
SYNE2-228ENST00000639659 NPAS3Q8IXF0 933 aa16.58■□□□□ 0.24
SYNE2-228ENST00000639659 MAML2Q8IZL2 1156 aaPredicted RBP16.58■□□□□ 0.24
SYNE2-228ENST00000639659 ATRIPQ8WXE1 791 aa16.58■□□□□ 0.24
SYNE2-228ENST00000639659 WASF1Q92558 559 aa16.58■□□□□ 0.24
SYNE2-228ENST00000639659 MCRS1Q96EZ8 462 aa16.58■□□□□ 0.24
SYNE2-228ENST00000639659 HSD17B14Q9BPX1 270 aa16.58■□□□□ 0.24
SYNE2-228ENST00000639659 TM6SF1Q9BZW5 370 aa16.58■□□□□ 0.24
SYNE2-228ENST00000639659 LTB4R2Q9NPC1 389 aa16.58■□□□□ 0.24
SYNE2-228ENST00000639659 TPCN1Q9ULQ1 816 aa16.58■□□□□ 0.24
SYNE2-228ENST00000639659 MRPS23Q9Y3D9 190 aaKnown RBP16.58■□□□□ 0.24
SYNE2-228ENST00000639659 ZMYM2Q9UBW7 1377 aa16.58■□□□□ 0.24
SYNE2-228ENST00000639659 PATJQ8NI35 1801 aa16.58■□□□□ 0.24
SYNE2-228ENST00000639659 VWA8A3KMH1 1905 aa16.58■□□□□ 0.24
SYNE2-228ENST00000639659 VARS2Q5ST30 1063 aaKnown RBP16.57■□□□□ 0.24
SYNE2-228ENST00000639659 PDXDC1Q6P996 788 aa16.57■□□□□ 0.24
SYNE2-228ENST00000639659 TSSK4Q6SA08 328 aa16.57■□□□□ 0.24
SYNE2-228ENST00000639659 PPP4R3CPQ6ZMV5 832 aa16.57■□□□□ 0.24
SYNE2-228ENST00000639659 SUMF1Q8NBK3 374 aa16.57■□□□□ 0.24
SYNE2-228ENST00000639659 DEPTORQ8TB45 409 aa16.57■□□□□ 0.24
SYNE2-228ENST00000639659 PRIMPOLQ96LW4 560 aa16.57■□□□□ 0.24
SYNE2-228ENST00000639659 DNMT3BQ9UBC3 853 aaKnown RBP16.57■□□□□ 0.24
SYNE2-228ENST00000639659 CDY1Q9Y6F8 540 aa16.57■□□□□ 0.24
SYNE2-228ENST00000639659 OTOGLQ3ZCN5 2332 aa16.57■□□□□ 0.24
SYNE2-228ENST00000639659 I3L4J1 428 aa16.56■□□□□ 0.24
SYNE2-228ENST00000639659 WNT7AO00755 349 aa16.56■□□□□ 0.24
SYNE2-228ENST00000639659 PFKFB2O60825 505 aa16.56■□□□□ 0.24
SYNE2-228ENST00000639659 B3GAT3O94766 335 aa16.56■□□□□ 0.24
SYNE2-228ENST00000639659 HOXA9P31269 272 aa16.56■□□□□ 0.24
SYNE2-228ENST00000639659 ARPP19P56211 112 aa16.56■□□□□ 0.24
SYNE2-228ENST00000639659 MAPK6Q16659 721 aa16.56■□□□□ 0.24
SYNE2-228ENST00000639659 ZBTB41Q5SVQ8 909 aa16.56■□□□□ 0.24
SYNE2-228ENST00000639659 EEF1DP3Q658K8 133 aa16.56■□□□□ 0.24
SYNE2-228ENST00000639659 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.56■□□□□ 0.24
SYNE2-228ENST00000639659 NECAB1Q8N987 351 aa16.56■□□□□ 0.24
SYNE2-228ENST00000639659 MCPH1Q8NEM0 835 aa16.56■□□□□ 0.24
SYNE2-228ENST00000639659 BSNDQ8WZ55 320 aa16.56■□□□□ 0.24
SYNE2-228ENST00000639659 KIFC3Q9BVG8 833 aa16.56■□□□□ 0.24
SYNE2-228ENST00000639659 C2orf40Q9H1Z8 148 aa16.56■□□□□ 0.24
SYNE2-228ENST00000639659 USP18Q9UMW8 372 aa16.56■□□□□ 0.24
SYNE2-228ENST00000639659 SPTLC1O15269 473 aa16.55■□□□□ 0.24
SYNE2-228ENST00000639659 CTDNEP1O95476 244 aa16.55■□□□□ 0.24
SYNE2-228ENST00000639659 IGFBP6P24592 240 aaPredicted RBP16.55■□□□□ 0.24
SYNE2-228ENST00000639659 TARSP26639 723 aaKnown RBP16.55■□□□□ 0.24
SYNE2-228ENST00000639659 TKTP29401 623 aaKnown RBP16.55■□□□□ 0.24
SYNE2-228ENST00000639659 CDCA2Q69YH5 1023 aaPredicted RBP16.55■□□□□ 0.24
SYNE2-228ENST00000639659 SECISBP2LQ93073 1101 aaKnown RBP16.55■□□□□ 0.24
SYNE2-228ENST00000639659 DDX23Q9BUQ8 820 aaKnown RBP16.55■□□□□ 0.24
SYNE2-228ENST00000639659 FZD8Q9H461 694 aa16.55■□□□□ 0.24
SYNE2-228ENST00000639659 GOLGA2P5Q9HBQ8 144 aa16.55■□□□□ 0.24
SYNE2-228ENST00000639659 POLD4Q9HCU8 107 aa16.55■□□□□ 0.24
SYNE2-228ENST00000639659 HEBP1Q9NRV9 189 aa16.55■□□□□ 0.24
SYNE2-228ENST00000639659 FBXO4Q9UKT5 387 aa16.55■□□□□ 0.24
SYNE2-228ENST00000639659 NDRG2Q9UN36 371 aaKnown RBP16.55■□□□□ 0.24
SYNE2-228ENST00000639659 SMG5Q9UPR3 1016 aaKnown RBP16.55■□□□□ 0.24
SYNE2-228ENST00000639659 CEP250Q9BV73 2442 aa16.55■□□□□ 0.24
SYNE2-228ENST00000639659 ARHGEF35A5YM69 484 aa16.54■□□□□ 0.24
SYNE2-228ENST00000639659 BTBD18B2RXH4 712 aa16.54■□□□□ 0.24
SYNE2-228ENST00000639659 MED24O75448 989 aa16.54■□□□□ 0.24
SYNE2-228ENST00000639659 LRG1P02750 347 aa16.54■□□□□ 0.24
SYNE2-228ENST00000639659 EDN1P05305 212 aa16.54■□□□□ 0.24
SYNE2-228ENST00000639659 RHOP08100 348 aa16.54■□□□□ 0.24
SYNE2-228ENST00000639659 CEBPBP17676 345 aa16.54■□□□□ 0.24
SYNE2-228ENST00000639659 MCM7P33993 719 aa16.54■□□□□ 0.24
SYNE2-228ENST00000639659 BRCC3P46736 316 aa16.54■□□□□ 0.24
SYNE2-228ENST00000639659 CLCNKBP51801 687 aa16.54■□□□□ 0.24
SYNE2-228ENST00000639659 RAB33AQ14088 237 aa16.54■□□□□ 0.24
SYNE2-228ENST00000639659 TRIM29Q14134 588 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms