RNA–Protein interactions for RNA: ENST00000638755.1

PAX6-238, Transcript of paired box 6, human

TSL 5 BASIC

Gene PAX6, Length 1,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PAX6-238	ENST00000638755	MAP4K3	Q8IVH8	894 aa		13.09	□□□□□ -0.31
PAX6-238	ENST00000638755	PRPF31	Q8WWY3	499 aa	Known RBP	13.09	□□□□□ -0.31
PAX6-238	ENST00000638755	PIK3R5	Q8WYR1	880 aa		13.09	□□□□□ -0.31
PAX6-238	ENST00000638755	LENG9	Q96B70	501 aa		13.09	□□□□□ -0.31
PAX6-238	ENST00000638755	CPB2	Q96IY4	423 aa		13.09	□□□□□ -0.31
PAX6-238	ENST00000638755	LOXL4	Q96JB6	756 aa		13.09	□□□□□ -0.31
PAX6-238	ENST00000638755	TMEM87B	Q96K49	555 aa		13.09	□□□□□ -0.31
PAX6-238	ENST00000638755	PAAF1	Q9BRP4	392 aa		13.09	□□□□□ -0.31
PAX6-238	ENST00000638755	LRRC2	Q9BYS8	371 aa		13.09	□□□□□ -0.31
PAX6-238	ENST00000638755	ASH1L	Q9NR48	2969 aa	Known RBP	13.08	□□□□□ -0.31
PAX6-238	ENST00000638755	C4orf47	A7E2U8	309 aa		13.08	□□□□□ -0.32
PAX6-238	ENST00000638755	hCG_1984214	I3L0E3	225 aa		13.08	□□□□□ -0.32
PAX6-238	ENST00000638755	RPP40	O75818	363 aa	Known RBP	13.08	□□□□□ -0.32
PAX6-238	ENST00000638755	CCDC192	P0DO97	292 aa		13.08	□□□□□ -0.32
PAX6-238	ENST00000638755	PSMC3	P17980	439 aa		13.08	□□□□□ -0.32
PAX6-238	ENST00000638755	LIFR	P42702	1097 aa		13.08	□□□□□ -0.32
PAX6-238	ENST00000638755	SOWAHC	Q53LP3	525 aa	Predicted RBP	13.08	□□□□□ -0.32
PAX6-238	ENST00000638755	PLA2G2C	Q5R387	149 aa		13.08	□□□□□ -0.32
PAX6-238	ENST00000638755	LRCH2	Q5VUJ6	765 aa		13.08	□□□□□ -0.32
PAX6-238	ENST00000638755	CHD1L	Q86WJ1	897 aa		13.08	□□□□□ -0.32
PAX6-238	ENST00000638755	ZNF713	Q8N859	430 aa	Predicted RBP	13.08	□□□□□ -0.32
PAX6-238	ENST00000638755	GSTCD	Q8NEC7	633 aa		13.08	□□□□□ -0.32
PAX6-238	ENST00000638755	GAB3	Q8WWW8	586 aa		13.08	□□□□□ -0.32
PAX6-238	ENST00000638755	TMEM143	Q96AN5	459 aa		13.08	□□□□□ -0.32
PAX6-238	ENST00000638755	MTA3	Q9BTC8	594 aa		13.08	□□□□□ -0.32
PAX6-238	ENST00000638755	EDEM2	Q9BV94	578 aa		13.08	□□□□□ -0.32
PAX6-238	ENST00000638755	TEKT3	Q9BXF9	490 aa		13.08	□□□□□ -0.32
PAX6-238	ENST00000638755	TRIM6	Q9C030	488 aa	Predicted RBP	13.08	□□□□□ -0.32
PAX6-238	ENST00000638755	NXF3	Q9H4D5	531 aa	Known RBP	13.08	□□□□□ -0.32
PAX6-238	ENST00000638755	KLK14	Q9P0G3	267 aa		13.08	□□□□□ -0.32
PAX6-238	ENST00000638755	COL4A2	P08572	1712 aa		13.08	□□□□□ -0.32
PAX6-238	ENST00000638755	CASTOR2	A6NHX0	329 aa		13.07	□□□□□ -0.32
PAX6-238	ENST00000638755	ZNF263	O14978	683 aa		13.07	□□□□□ -0.32
PAX6-238	ENST00000638755	PTPN2	P17706	415 aa		13.07	□□□□□ -0.32
PAX6-238	ENST00000638755	VIPR2	P41587	438 aa		13.07	□□□□□ -0.32
PAX6-238	ENST00000638755	LAMTOR4	Q0VGL1	99 aa		13.07	□□□□□ -0.32
PAX6-238	ENST00000638755	RAB33A	Q14088	237 aa		13.07	□□□□□ -0.32
PAX6-238	ENST00000638755	KIAA1211L	Q6NV74	962 aa		13.07	□□□□□ -0.32
PAX6-238	ENST00000638755	NOTUM	Q6P988	496 aa		13.07	□□□□□ -0.32
PAX6-238	ENST00000638755	VIT	Q6UXI7	678 aa		13.07	□□□□□ -0.32
PAX6-238	ENST00000638755	SYNE3	Q6ZMZ3	975 aa		13.07	□□□□□ -0.32
PAX6-238	ENST00000638755	ANO5	Q75V66	913 aa		13.07	□□□□□ -0.32
PAX6-238	ENST00000638755	EXOC6	Q8TAG9	804 aa		13.07	□□□□□ -0.32
PAX6-238	ENST00000638755	TCEAL4	Q96EI5	215 aa		13.07	□□□□□ -0.32
PAX6-238	ENST00000638755	ASB16	Q96NS5	453 aa		13.07	□□□□□ -0.32
PAX6-238	ENST00000638755	RIT2	Q99578	217 aa		13.07	□□□□□ -0.32
PAX6-238	ENST00000638755	JPH2	Q9BR39	696 aa	Predicted RBP	13.07	□□□□□ -0.32
PAX6-238	ENST00000638755	CORO1B	Q9BR76	489 aa		13.07	□□□□□ -0.32
PAX6-238	ENST00000638755	TRPV5	Q9NQA5	729 aa		13.07	□□□□□ -0.32
PAX6-238	ENST00000638755	VPS45	Q9NRW7	570 aa		13.07	□□□□□ -0.32
PAX6-238	ENST00000638755	BMP2K	Q9NSY1	1161 aa	Predicted RBP	13.07	□□□□□ -0.32
PAX6-238	ENST00000638755	PARP2	Q9UGN5	583 aa		13.07	□□□□□ -0.32
PAX6-238	ENST00000638755	GIT1	Q9Y2X7	761 aa		13.07	□□□□□ -0.32
PAX6-238	ENST00000638755	LOC400499	M0QZD8	3231 aa		13.07	□□□□□ -0.32
PAX6-238	ENST00000638755	SLC38A8	A6NNN8	435 aa		13.06	□□□□□ -0.32
PAX6-238	ENST00000638755	TSPAN1	O60635	241 aa		13.06	□□□□□ -0.32
PAX6-238	ENST00000638755	KIF4A	O95239	1232 aa		13.06	□□□□□ -0.32
PAX6-238	ENST00000638755	CIITA	P33076	1130 aa		13.06	□□□□□ -0.32
PAX6-238	ENST00000638755	SOX9	P48436	509 aa		13.06	□□□□□ -0.32
PAX6-238	ENST00000638755	KPNA1	P52294	538 aa	Predicted RBP	13.06	□□□□□ -0.32
PAX6-238	ENST00000638755	NPEPPS	P55786	919 aa		13.06	□□□□□ -0.32
PAX6-238	ENST00000638755	GRIK3	Q13003	919 aa		13.06	□□□□□ -0.32
PAX6-238	ENST00000638755	WDR44	Q5JSH3	913 aa		13.06	□□□□□ -0.32
PAX6-238	ENST00000638755	DAB2IP	Q5VWQ8	1189 aa		13.06	□□□□□ -0.32
PAX6-238	ENST00000638755	C19orf48	Q6RUI8	117 aa		13.06	□□□□□ -0.32
PAX6-238	ENST00000638755	HACE1	Q8IYU2	909 aa		13.06	□□□□□ -0.32
PAX6-238	ENST00000638755	REXO1	Q8N1G1	1221 aa	Known RBP	13.06	□□□□□ -0.32
PAX6-238	ENST00000638755	RNF149	Q8NC42	400 aa		13.06	□□□□□ -0.32
PAX6-238	ENST00000638755	CSGALNACT1	Q8TDX6	532 aa		13.06	□□□□□ -0.32
PAX6-238	ENST00000638755	RUFY2	Q8WXA3	655 aa		13.06	□□□□□ -0.32
PAX6-238	ENST00000638755	PSPC1	Q8WXF1	523 aa	Known RBP	13.06	□□□□□ -0.32
PAX6-238	ENST00000638755	SLC7A3	Q8WY07	619 aa		13.06	□□□□□ -0.32
PAX6-238	ENST00000638755	CCDC136	Q96JN2	1154 aa		13.06	□□□□□ -0.32
PAX6-238	ENST00000638755	CSRNP2	Q9H175	543 aa		13.06	□□□□□ -0.32
PAX6-238	ENST00000638755	PCDHGA5	Q9Y5G8	931 aa		13.06	□□□□□ -0.32
PAX6-238	ENST00000638755	HELZ2	Q9BYK8	2649 aa	Known RBP	13.06	□□□□□ -0.32
PAX6-238	ENST00000638755	SMG1	Q96Q15	3661 aa	Known RBP	13.06	□□□□□ -0.32
PAX6-238	ENST00000638755	IGSF10	Q6WRI0	2623 aa		13.05	□□□□□ -0.32
PAX6-238	ENST00000638755	EXTL3	O43909	919 aa		13.05	□□□□□ -0.32
PAX6-238	ENST00000638755	LRG1	P02750	347 aa		13.05	□□□□□ -0.32
PAX6-238	ENST00000638755	HOXA6	P31267	233 aa		13.05	□□□□□ -0.32
PAX6-238	ENST00000638755	NCBP1	Q09161	790 aa	Known RBP	13.05	□□□□□ -0.32
PAX6-238	ENST00000638755	FUT2	Q10981	343 aa		13.05	□□□□□ -0.32
PAX6-238	ENST00000638755	PRSS36	Q5K4E3	855 aa		13.05	□□□□□ -0.32
PAX6-238	ENST00000638755	PDXDC1	Q6P996	788 aa		13.05	□□□□□ -0.32
PAX6-238	ENST00000638755	ZNF579	Q8NAF0	562 aa	Known RBP	13.05	□□□□□ -0.32
PAX6-238	ENST00000638755	TTC8	Q8TAM2	541 aa		13.05	□□□□□ -0.32
PAX6-238	ENST00000638755	SLC5A5	Q92911	643 aa		13.05	□□□□□ -0.32
PAX6-238	ENST00000638755	SMARCD2	Q92925	531 aa		13.05	□□□□□ -0.32
PAX6-238	ENST00000638755	ZSWIM3	Q96MP5	696 aa		13.05	□□□□□ -0.32
PAX6-238	ENST00000638755	AVEN	Q9NQS1	362 aa	Predicted RBP	13.05	□□□□□ -0.32
PAX6-238	ENST00000638755	RBM28	Q9NW13	759 aa	Known RBP	13.05	□□□□□ -0.32
PAX6-238	ENST00000638755	CDY1	Q9Y6F8	540 aa		13.05	□□□□□ -0.32
PAX6-238	ENST00000638755	MAST4	O15021	2626 aa		13.04	□□□□□ -0.32
PAX6-238	ENST00000638755	WDR27	A2RRH5	827 aa		13.04	□□□□□ -0.32
PAX6-238	ENST00000638755	INO80B-WBP1	J3KQ70	363 aa		13.04	□□□□□ -0.32
PAX6-238	ENST00000638755	HYAL3	O43820	417 aa	Predicted RBP	13.04	□□□□□ -0.32
PAX6-238	ENST00000638755	CEACAM1	P13688	526 aa		13.04	□□□□□ -0.32
PAX6-238	ENST00000638755	AXL	P30530	894 aa		13.04	□□□□□ -0.32
PAX6-238	ENST00000638755	CCR2	P41597	374 aa		13.04	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms