RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 CENPSQ8N2Z9 138 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 CCDC89Q8N998 374 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 LILRB4Q8NHJ6 448 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 ZNF274Q96GC6 653 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-216ENST00000637968 FAM227BQ96M60 508 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 PHF12Q96QT6 1004 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 AP1M1Q9BXS5 423 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 LACRTQ9GZZ8 138 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 EPB41L1Q9H4G0 881 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 ZNF277Q9NRM2 450 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-216ENST00000637968 LIMA1Q9UHB6 759 aaKnown RBP6.06□□□□□ -1.44
SCN1A-216ENST00000637968 ASAP1Q9ULH1 1129 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 DTNAQ9Y4J8 743 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 AP4S1Q9Y587 144 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 A0A1W2PQC6 194 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 FAM25EA8MYX2 175 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 DDX3XO00571 662 aaKnown RBP eCLIP6.06□□□□□ -1.44
SCN1A-216ENST00000637968 ECE2O60344 883 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 FAM58BPP0C7Q3 252 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 FAM228BP0C875 321 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 RPL17P18621 184 aaKnown RBP6.06□□□□□ -1.44
SCN1A-216ENST00000637968 TXKP42681 527 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 ARHGAP4P98171 946 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 C10orf76Q5T2E6 689 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 RWDD4Q6NW29 188 aaKnown RBP6.06□□□□□ -1.44
SCN1A-216ENST00000637968 IYDQ6PHW0 289 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 CDR2LQ86X02 465 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-216ENST00000637968 IFNLR1Q8IU57 520 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-216ENST00000637968 MMAAQ8IVH4 418 aaKnown RBP6.06□□□□□ -1.44
SCN1A-216ENST00000637968 SYCE1Q8N0S2 351 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 NDUFAF2Q8N183 169 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 FERD3LQ96RJ6 166 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 PLEKHF1Q96S99 279 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 CNNM2Q9H8M5 875 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 PSTPIP2Q9H939 334 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 TBC1D14Q9P2M4 693 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 TBK1Q9UHD2 729 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 PCDHB2Q9Y5E7 798 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 TARBP1Q13395 1621 aaKnown RBP6.06□□□□□ -1.44
SCN1A-216ENST00000637968 C15orf38-AP3S2A0A0A6YYH1 394 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 PNMA6EA0A0J9YXQ4 647 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 HAT1O14929 419 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 RANBP6O60518 1105 aaKnown RBP6.06□□□□□ -1.44
SCN1A-216ENST00000637968 SIN3BO75182 1162 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 EPN2O95208 641 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 CBX6O95503 412 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 MYCP01106 439 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-216ENST00000637968 ATF4P18848 351 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-216ENST00000637968 KRT15P19012 456 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 EIF4A3P38919 411 aaKnown RBP6.06□□□□□ -1.44
SCN1A-216ENST00000637968 CLK3P49761 638 aaKnown RBP6.06□□□□□ -1.44
SCN1A-216ENST00000637968 YWHAGP61981 247 aaKnown RBP eCLIP6.06□□□□□ -1.44
SCN1A-216ENST00000637968 PLS1Q14651 629 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 CNGA2Q16280 664 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 CRY1Q16526 586 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 TAF1BQ53T94 588 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-216ENST00000637968 ASRGL1Q7L266 308 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 ARPINQ7Z6K5 226 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 NLRP10Q86W26 655 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 ZC3H15Q8WU90 426 aaKnown RBP6.06□□□□□ -1.44
SCN1A-216ENST00000637968 SEPT1Q8WYJ6 367 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 TAMM41Q96BW9 452 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 DCUN1D5Q9BTE7 237 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 ROPN1BQ9BZX4 212 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-216ENST00000637968 DDX47Q9H0S4 455 aaKnown RBP6.06□□□□□ -1.44
SCN1A-216ENST00000637968 PABPC3Q9H361 631 aaKnown RBP6.06□□□□□ -1.44
SCN1A-216ENST00000637968 RAD21L1Q9H4I0 556 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 NOL6Q9H6R4 1146 aaKnown RBP6.06□□□□□ -1.44
SCN1A-216ENST00000637968 ROPN1Q9HAT0 212 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-216ENST00000637968 NEK6Q9HC98 313 aa6.06□□□□□ -1.44
SCN1A-216ENST00000637968 ITSN2Q9NZM3 1697 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 CHMP2AO43633 222 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 ICMTO60725 284 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 PALMO75781 387 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 OR6B1O95007 311 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 SEMA3DO95025 777 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 BMP15O95972 392 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 SPATA31D3P0C874 917 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 RASA1P20936 1047 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 HSPA13P48723 471 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 SLC9A3P48764 834 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 ERFP50548 548 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 DLG4P78352 724 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 SCRN3Q0VDG4 424 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 MTFR1Q15390 333 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 OASLQ15646 514 aaKnown RBP6.05□□□□□ -1.44
SCN1A-216ENST00000637968 RABL6Q3YEC7 729 aaPredicted RBP6.05□□□□□ -1.44
SCN1A-216ENST00000637968 SPATA31D4Q6ZUB0 917 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 RRAGAQ7L523 313 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 TMC3Q7Z5M5 1100 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 USP38Q8NB14 1042 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 ST13P5Q8NFI4 369 aaPredicted RBP6.05□□□□□ -1.44
SCN1A-216ENST00000637968 SCFD1Q8WVM8 642 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 CNBD2Q96M20 576 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 VPS35Q96QK1 796 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 ERP44Q9BS26 406 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 C17orf80Q9BSJ5 609 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 WDR6Q9NNW5 1121 aaKnown RBP6.05□□□□□ -1.44
SCN1A-216ENST00000637968 MRPL40Q9NQ50 206 aaKnown RBP6.05□□□□□ -1.44
SCN1A-216ENST00000637968 DIABLOQ9NR28 239 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms