RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 USP17L6PQ6QN14 398 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 IRF2BP2Q7Z5L9 587 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 NT5DC3Q86UY8 548 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 CATSPER3Q86XQ3 398 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 TPH2Q8IWU9 490 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 CCDC13Q8IYE1 715 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 TBC1D16Q8TBP0 767 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 FBF1Q8TES7 1133 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 NUDT12Q9BQG2 462 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 EIF2AK1Q9BQI3 630 aaKnown RBP4.26□□□□□ -1.73
SCN1A-214ENST00000637038 PACSIN1Q9BY11 444 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 UTP3Q9NQZ2 479 aaKnown RBP eCLIP4.26□□□□□ -1.73
SCN1A-214ENST00000637038 NPHP3-ACAD11A0A0J9YXS1 232 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 ATP2A1O14983 1001 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 ASAP2O43150 1006 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 ATP2C2O75185 946 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 COQ9O75208 318 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 HOXC6P09630 235 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 NUDT17P0C025 328 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 CIITAP33076 1130 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 RWDD2BP57060 319 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 NR1H3Q13133 447 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 MAPK7Q13164 816 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 AOC3Q16853 763 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 ABCB5Q2M3G0 1257 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 LIN9Q5TKA1 542 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 ELMSAN1Q6PJG2 1045 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 PPP1R21Q6ZMI0 780 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 MAMSTRQ6ZN01 415 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 JAMLQ86YT9 394 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 SLC35G2Q8TBE7 412 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 MAGEC3Q8TD91 643 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 SLC35C1Q96A29 364 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 HES6Q96HZ4 224 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 DCBLD2Q96PD2 775 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 RAB3IPQ96QF0 476 aaPredicted RBP4.26□□□□□ -1.73
SCN1A-214ENST00000637038 AGPAT1Q99943 283 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 MOV10L1Q9BXT6 1211 aaKnown RBP4.26□□□□□ -1.73
SCN1A-214ENST00000637038 SLC40A1Q9NP59 571 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 GGA3Q9NZ52 723 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 UVRAGQ9P2Y5 699 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 ASIC3Q9UHC3 531 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 COL4A5P29400 1685 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 CCT8L1PA6NM43 557 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 H0YCG3 227 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 K7ENM7 598 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 MEIS1O00470 390 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 CXCL11O14625 94 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 TNPO2O14787 897 aaKnown RBP4.26□□□□□ -1.73
SCN1A-214ENST00000637038 RIMBP2O15034 1052 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 CLIC2O15247 247 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 BUB1BO60566 1050 aaPredicted RBP4.26□□□□□ -1.73
SCN1A-214ENST00000637038 RTN2O75298 545 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 DNAJC8O75937 253 aaPredicted RBP4.26□□□□□ -1.73
SCN1A-214ENST00000637038 CYP3A4P08684 503 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 MAPTP10636 758 aaKnown RBP4.26□□□□□ -1.73
SCN1A-214ENST00000637038 ALDH3A1P30838 453 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 STAT3P40763 770 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 SEC24CP53992 1094 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 BPIFB4P59827 614 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 ATP11AP98196 1134 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 CYP4A11Q02928 519 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 GABPAQ06546 454 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 SEPT7Q16181 437 aaKnown RBP4.26□□□□□ -1.73
SCN1A-214ENST00000637038 TTBK2Q6IQ55 1244 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 ERO1BQ86YB8 467 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 GLYCTKQ8IVS8 523 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 GMCL1P1Q8NEA9 526 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 RAPGEF5Q92565 580 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 GMCL1Q96IK5 515 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 FOXP3Q9BZS1 431 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 AS3MTQ9HBK9 375 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 ZSWIM8A7E2V4 1837 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 C5orf60A6NFR6 353 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 FAM155AB1AL88 458 aaPredicted RBP4.26□□□□□ -1.73
SCN1A-214ENST00000637038 MYO1FO00160 1098 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 DDX3XO00571 662 aaKnown RBP eCLIP4.26□□□□□ -1.73
SCN1A-214ENST00000637038 AKAP3O75969 853 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 EEF2P13639 858 aaKnown RBP4.26□□□□□ -1.73
SCN1A-214ENST00000637038 EN2P19622 333 aaPredicted RBP4.26□□□□□ -1.73
SCN1A-214ENST00000637038 ID4P47928 161 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 ZNF131P52739 623 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 JAM2P57087 298 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 USH1GQ495M9 461 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 LACTB2Q53H82 288 aaPredicted RBP4.26□□□□□ -1.73
SCN1A-214ENST00000637038 ARHGEF18Q6ZSZ5 1173 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 ZNF365Q70YC5 407 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 ENOSF1Q7L5Y1 443 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 EPM2AIP1Q7L775 607 aaPredicted RBP4.26□□□□□ -1.73
SCN1A-214ENST00000637038 MIER3Q7Z3K6 550 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 FAM160B2Q86V87 743 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 CCDC25Q86WR0 208 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 ZFPM1Q8IX07 1006 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 TATDN2Q93075 761 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 GRAMD1AQ96CP6 724 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 JPH2Q9BR39 696 aaPredicted RBP4.26□□□□□ -1.73
SCN1A-214ENST00000637038 DDX20Q9UHI6 824 aaKnown RBP4.26□□□□□ -1.73
SCN1A-214ENST00000637038 KIAA1217Q5T5P2 1943 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 CCL15-CCL14A0A0B4J2E2 113 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 A0A1W2PRG0 241 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms