RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 TRPC6Q9Y210 931 aa16.84■□□□□ 0.29
CLN3-251ENST00000636853 POLR3GO15318 223 aaPredicted RBP16.83■□□□□ 0.28
CLN3-251ENST00000636853 OAS2P29728 719 aaKnown RBP16.83■□□□□ 0.28
CLN3-251ENST00000636853 PIK3CAP42336 1068 aa16.83■□□□□ 0.28
CLN3-251ENST00000636853 PDE6CP51160 858 aa16.83■□□□□ 0.28
CLN3-251ENST00000636853 TTLL4Q14679 1199 aa16.83■□□□□ 0.28
CLN3-251ENST00000636853 HES6Q96HZ4 224 aa16.83■□□□□ 0.28
CLN3-251ENST00000636853 BTBD19C9JJ37 291 aa16.82■□□□□ 0.28
CLN3-251ENST00000636853 ATMINO43313 823 aaPredicted RBP16.82■□□□□ 0.28
CLN3-251ENST00000636853 VNN1O95497 513 aa16.82■□□□□ 0.28
CLN3-251ENST00000636853 LDHAP00338 332 aaKnown RBP16.82■□□□□ 0.28
CLN3-251ENST00000636853 MS4A4AQ96JQ5 239 aa16.82■□□□□ 0.28
CLN3-251ENST00000636853 SELENOOQ9BVL4 669 aa16.82■□□□□ 0.28
CLN3-251ENST00000636853 ZCCHC17Q9NP64 241 aaKnown RBP16.82■□□□□ 0.28
CLN3-251ENST00000636853 STIM2Q9P246 746 aa16.82■□□□□ 0.28
CLN3-251ENST00000636853 CTTNBP2NLQ9P2B4 639 aa16.82■□□□□ 0.28
CLN3-251ENST00000636853 ASB14A6NK59 587 aa16.82■□□□□ 0.28
CLN3-251ENST00000636853 H3BQF6 201 aa16.82■□□□□ 0.28
CLN3-251ENST00000636853 CLDN3O15551 220 aa16.82■□□□□ 0.28
CLN3-251ENST00000636853 MSCO60682 206 aa16.82■□□□□ 0.28
CLN3-251ENST00000636853 ADORA2AP29274 412 aa16.82■□□□□ 0.28
CLN3-251ENST00000636853 TNFSF9P41273 254 aa16.82■□□□□ 0.28
CLN3-251ENST00000636853 GPC5P78333 572 aa16.82■□□□□ 0.28
CLN3-251ENST00000636853 CDR2Q01850 454 aa16.82■□□□□ 0.28
CLN3-251ENST00000636853 GCNT1Q02742 428 aa16.82■□□□□ 0.28
CLN3-251ENST00000636853 RHPN2Q8IUC4 686 aa16.82■□□□□ 0.28
CLN3-251ENST00000636853 KLHL7Q8IXQ5 586 aa16.82■□□□□ 0.28
CLN3-251ENST00000636853 TCP11Q8WWU5 503 aa16.82■□□□□ 0.28
CLN3-251ENST00000636853 DDX1Q92499 740 aaKnown RBP16.82■□□□□ 0.28
CLN3-251ENST00000636853 TCHPQ9BT92 498 aa16.82■□□□□ 0.28
CLN3-251ENST00000636853 CCDC113Q9H0I3 377 aa16.82■□□□□ 0.28
CLN3-251ENST00000636853 SMARCAD1Q9H4L7 1026 aa16.82■□□□□ 0.28
CLN3-251ENST00000636853 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.82■□□□□ 0.28
CLN3-251ENST00000636853 CNTNAP2Q9UHC6 1331 aa16.82■□□□□ 0.28
CLN3-251ENST00000636853 CCL15-CCL14A0A0B4J2E2 113 aa16.81■□□□□ 0.28
CLN3-251ENST00000636853 IGKV6-21A0A0C4DH24 114 aa16.81■□□□□ 0.28
CLN3-251ENST00000636853 ZC3H11AO75152 810 aaKnown RBP eCLIP16.81■□□□□ 0.28
CLN3-251ENST00000636853 EFNA5P52803 228 aa16.81■□□□□ 0.28
CLN3-251ENST00000636853 CCL15Q16663 113 aa16.81■□□□□ 0.28
CLN3-251ENST00000636853 WDR44Q5JSH3 913 aa16.81■□□□□ 0.28
CLN3-251ENST00000636853 SCARA3Q6AZY7 606 aa16.81■□□□□ 0.28
CLN3-251ENST00000636853 RHOT2Q8IXI1 618 aa16.81■□□□□ 0.28
CLN3-251ENST00000636853 OR5B17Q8NGF7 314 aa16.81■□□□□ 0.28
CLN3-251ENST00000636853 ACTRT1Q8TDG2 376 aa16.81■□□□□ 0.28
CLN3-251ENST00000636853 SCFD2Q8WU76 684 aa16.81■□□□□ 0.28
CLN3-251ENST00000636853 AP1M1Q9BXS5 423 aa16.81■□□□□ 0.28
CLN3-251ENST00000636853 MRPL4Q9BYD3 311 aaKnown RBP16.81■□□□□ 0.28
CLN3-251ENST00000636853 TMEM59LQ9UK28 342 aa16.81■□□□□ 0.28
CLN3-251ENST00000636853 NOC2LQ9Y3T9 749 aaKnown RBP16.81■□□□□ 0.28
CLN3-251ENST00000636853 PPME1Q9Y570 386 aa16.81■□□□□ 0.28
CLN3-251ENST00000636853 PLXNA1Q9UIW2 1896 aa16.81■□□□□ 0.28
CLN3-251ENST00000636853 ZSCAN5CA6NGD5 496 aaPredicted RBP16.81■□□□□ 0.28
CLN3-251ENST00000636853 GLI1P08151 1106 aa16.81■□□□□ 0.28
CLN3-251ENST00000636853 GZMAP12544 262 aa16.81■□□□□ 0.28
CLN3-251ENST00000636853 IRX5P78411 483 aaPredicted RBP16.81■□□□□ 0.28
CLN3-251ENST00000636853 MXD4Q14582 209 aaPredicted RBP16.81■□□□□ 0.28
CLN3-251ENST00000636853 CDCA2Q69YH5 1023 aaPredicted RBP16.81■□□□□ 0.28
CLN3-251ENST00000636853 ZPBP2Q6X784 338 aa16.81■□□□□ 0.28
CLN3-251ENST00000636853 ENOSF1Q7L5Y1 443 aa16.81■□□□□ 0.28
CLN3-251ENST00000636853 BRI3BPQ8WY22 251 aa16.81■□□□□ 0.28
CLN3-251ENST00000636853 NLRP4Q96MN2 994 aa16.81■□□□□ 0.28
CLN3-251ENST00000636853 RNPEPQ9H4A4 650 aa16.81■□□□□ 0.28
CLN3-251ENST00000636853 EVPLQ92817 2033 aa16.81■□□□□ 0.28
CLN3-251ENST00000636853 TMEM110-MUSTN1A8MSY1 372 aa16.8■□□□□ 0.28
CLN3-251ENST00000636853 DDX3YO15523 660 aaKnown RBP16.8■□□□□ 0.28
CLN3-251ENST00000636853 CLSTN1O94985 981 aa16.8■□□□□ 0.28
CLN3-251ENST00000636853 PRKCBP05771 671 aa16.8■□□□□ 0.28
CLN3-251ENST00000636853 CETPP11597 493 aa16.8■□□□□ 0.28
CLN3-251ENST00000636853 CLCN3P51790 818 aa16.8■□□□□ 0.28
CLN3-251ENST00000636853 CCNA1P78396 465 aa16.8■□□□□ 0.28
CLN3-251ENST00000636853 ARHGAP1Q07960 439 aa16.8■□□□□ 0.28
CLN3-251ENST00000636853 ZNF792Q3KQV3 632 aa16.8■□□□□ 0.28
CLN3-251ENST00000636853 GLE1Q53GS7 698 aaKnown RBP16.8■□□□□ 0.28
CLN3-251ENST00000636853 CGRRF1Q99675 332 aa16.8■□□□□ 0.28
CLN3-251ENST00000636853 ACO2Q99798 780 aaKnown RBP16.8■□□□□ 0.28
CLN3-251ENST00000636853 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.8■□□□□ 0.283e-6■□□□□ 10.1
CLN3-251ENST00000636853 APOBEC3GQ9HC16 384 aaKnown RBP16.8■□□□□ 0.28
CLN3-251ENST00000636853 DIS3Q9Y2L1 958 aaKnown RBP16.8■□□□□ 0.28
CLN3-251ENST00000636853 PLXNB2O15031 1838 aa16.8■□□□□ 0.28
CLN3-251ENST00000636853 ZC3H4Q9UPT8 1303 aaKnown RBP16.8■□□□□ 0.28
CLN3-251ENST00000636853 PGRMC1O00264 195 aaKnown RBP16.8■□□□□ 0.28
CLN3-251ENST00000636853 GAS2O43903 313 aaKnown RBP16.8■□□□□ 0.28
CLN3-251ENST00000636853 GRIN3BO60391 1043 aa16.8■□□□□ 0.28
CLN3-251ENST00000636853 TOM1L1O75674 476 aa16.8■□□□□ 0.28
CLN3-251ENST00000636853 IGBP1P78318 339 aa16.8■□□□□ 0.28
CLN3-251ENST00000636853 MAPK6Q16659 721 aa16.8■□□□□ 0.28
CLN3-251ENST00000636853 DCAF12L1Q5VU92 463 aa16.8■□□□□ 0.28
CLN3-251ENST00000636853 EFCAB12Q6NXP0 572 aa16.8■□□□□ 0.28
CLN3-251ENST00000636853 TAPT1Q6NXT6 567 aa16.8■□□□□ 0.28
CLN3-251ENST00000636853 ZBTB8OSQ8IWT0 167 aa16.8■□□□□ 0.28
CLN3-251ENST00000636853 AENQ8WTP8 325 aaKnown RBP16.8■□□□□ 0.28
CLN3-251ENST00000636853 ALG6Q9Y672 507 aa16.8■□□□□ 0.28
CLN3-251ENST00000636853 ESYT3A0FGR9 886 aa16.79■□□□□ 0.28
CLN3-251ENST00000636853 FAM189A1O60320 539 aa16.79■□□□□ 0.28
CLN3-251ENST00000636853 HBP1O60381 514 aa16.79■□□□□ 0.28
CLN3-251ENST00000636853 HEXIM1O94992 359 aaKnown RBP16.79■□□□□ 0.28
CLN3-251ENST00000636853 HADHBP55084 474 aaKnown RBP16.79■□□□□ 0.28
CLN3-251ENST00000636853 TNNC1P63316 161 aa16.79■□□□□ 0.28
CLN3-251ENST00000636853 RASGEF1CQ8N431 466 aa16.79■□□□□ 0.28
CLN3-251ENST00000636853 GTF3C2Q8WUA4 911 aaPredicted RBP16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms