RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 ARRDC4Q8NCT1 418 aa21.77■■□□□ 1.07
CLN3-250ENST00000636839 KAT5Q92993 513 aa21.77■■□□□ 1.07
CLN3-250ENST00000636839 TSEN34Q9BSV6 310 aaKnown RBP21.77■■□□□ 1.07
CLN3-250ENST00000636839 PLAGL2Q9UPG8 496 aa21.77■■□□□ 1.07
CLN3-250ENST00000636839 ARHGAP6O43182 974 aa21.76■■□□□ 1.07
CLN3-250ENST00000636839 N4BP1O75113 896 aaKnown RBP21.76■■□□□ 1.07
CLN3-250ENST00000636839 FAM228AQ86W67 206 aa21.76■■□□□ 1.07
CLN3-250ENST00000636839 CGRRF1Q99675 332 aa21.76■■□□□ 1.07
CLN3-250ENST00000636839 EDEM3Q9BZQ6 932 aa21.76■■□□□ 1.07
CLN3-250ENST00000636839 STARD7Q9NQZ5 370 aa21.76■■□□□ 1.07
CLN3-250ENST00000636839 DNAJC12Q9UKB3 198 aa21.76■■□□□ 1.07
CLN3-250ENST00000636839 PIN4Q9Y237 131 aaKnown RBP21.76■■□□□ 1.07
CLN3-250ENST00000636839 A0A0U1RQJ8 604 aa21.75■■□□□ 1.07
CLN3-250ENST00000636839 P4HA2O15460 535 aa21.75■■□□□ 1.07
CLN3-250ENST00000636839 VNN1O95497 513 aa21.75■■□□□ 1.07
CLN3-250ENST00000636839 GTF2H1P32780 548 aa21.75■■□□□ 1.07
CLN3-250ENST00000636839 EFCAB13Q8IY85 973 aa21.75■■□□□ 1.07
CLN3-250ENST00000636839 ATRIPQ8WXE1 791 aa21.75■■□□□ 1.07
CLN3-250ENST00000636839 IQCDQ96DY2 449 aa21.75■■□□□ 1.07
CLN3-250ENST00000636839 SENP6Q9GZR1 1112 aaPredicted RBP21.75■■□□□ 1.07
CLN3-250ENST00000636839 RNF19AQ9NV58 838 aa21.75■■□□□ 1.07
CLN3-250ENST00000636839 ARHGAP20Q9P2F6 1191 aa21.75■■□□□ 1.07
CLN3-250ENST00000636839 APEX2Q9UBZ4 518 aa21.75■■□□□ 1.07
CLN3-250ENST00000636839 COQ4Q9Y3A0 265 aa21.75■■□□□ 1.07
CLN3-250ENST00000636839 FRMPD3Q5JV73 1810 aa21.75■■□□□ 1.07
CLN3-250ENST00000636839 LACTBL1A8MY62 500 aa21.75■■□□□ 1.07
CLN3-250ENST00000636839 PMM2O15305 246 aa21.75■■□□□ 1.07
CLN3-250ENST00000636839 B4GALT4O60513 344 aa21.75■■□□□ 1.07
CLN3-250ENST00000636839 TSR1Q2NL82 804 aaKnown RBP21.75■■□□□ 1.07
CLN3-250ENST00000636839 SLC10A6Q3KNW5 377 aa21.75■■□□□ 1.07
CLN3-250ENST00000636839 ZACNQ401N2 412 aa21.75■■□□□ 1.07
CLN3-250ENST00000636839 CYP26C1Q6V0L0 522 aa21.75■■□□□ 1.07
CLN3-250ENST00000636839 USP37Q86T82 979 aa21.75■■□□□ 1.07
CLN3-250ENST00000636839 TMTC1Q8IUR5 882 aa21.75■■□□□ 1.07
CLN3-250ENST00000636839 FBXL13Q8NEE6 735 aa21.75■■□□□ 1.07
CLN3-250ENST00000636839 TATDN2Q93075 761 aa21.75■■□□□ 1.07
CLN3-250ENST00000636839 MTMR12Q9C0I1 747 aa21.75■■□□□ 1.07
CLN3-250ENST00000636839 GPR88Q9GZN0 384 aa21.75■■□□□ 1.07
CLN3-250ENST00000636839 UBE2TQ9NPD8 197 aaPredicted RBP21.75■■□□□ 1.07
CLN3-250ENST00000636839 RAB20Q9NX57 234 aa21.75■■□□□ 1.07
CLN3-250ENST00000636839 NOD1Q9Y239 953 aa21.75■■□□□ 1.07
CLN3-250ENST00000636839 TRPV2Q9Y5S1 764 aa21.75■■□□□ 1.07
CLN3-250ENST00000636839 NRDCO43847 1150 aa21.74■■□□□ 1.07
CLN3-250ENST00000636839 HNRNPH3P31942 346 aaKnown RBP21.74■■□□□ 1.07
CLN3-250ENST00000636839 JAM2P57087 298 aa21.74■■□□□ 1.07
CLN3-250ENST00000636839 MGAT3Q09327 533 aa21.74■■□□□ 1.07
CLN3-250ENST00000636839 CETN1Q12798 172 aa21.74■■□□□ 1.07
CLN3-250ENST00000636839 BIRC3Q13489 604 aa21.74■■□□□ 1.07
CLN3-250ENST00000636839 ARHGAP44Q17R89 818 aa21.74■■□□□ 1.07
CLN3-250ENST00000636839 AGO3Q9H9G7 860 aaKnown RBP21.74■■□□□ 1.07
CLN3-250ENST00000636839 RPF1Q9H9Y2 349 aaKnown RBP21.74■■□□□ 1.07
CLN3-250ENST00000636839 PHF24Q9UPV7 400 aa21.74■■□□□ 1.07
CLN3-250ENST00000636839 ZNF500O60304 480 aaPredicted RBP21.73■■□□□ 1.07
CLN3-250ENST00000636839 HSPA8P11142 646 aaKnown RBP21.73■■□□□ 1.07
CLN3-250ENST00000636839 TFAMQ00059 246 aaKnown RBP21.73■■□□□ 1.07
CLN3-250ENST00000636839 ENPEPQ07075 957 aa21.73■■□□□ 1.07
CLN3-250ENST00000636839 TRIM71Q2Q1W2 868 aaKnown RBP21.73■■□□□ 1.07
CLN3-250ENST00000636839 SFMBT2Q5VUG0 894 aa21.73■■□□□ 1.07
CLN3-250ENST00000636839 HGSNATQ68CP4 663 aa21.73■■□□□ 1.07
CLN3-250ENST00000636839 SPOPLQ6IQ16 392 aa21.73■■□□□ 1.07
CLN3-250ENST00000636839 NOTUMQ6P988 496 aa21.73■■□□□ 1.07
CLN3-250ENST00000636839 RSPH3Q86UC2 560 aa21.73■■□□□ 1.07
CLN3-250ENST00000636839 CCAR2Q8N163 923 aaKnown RBP21.73■■□□□ 1.07
CLN3-250ENST00000636839 ACRBPQ8NEB7 543 aa21.73■■□□□ 1.07
CLN3-250ENST00000636839 SPAG5Q96R06 1193 aa21.73■■□□□ 1.07
CLN3-250ENST00000636839 NHEJ1Q9H9Q4 299 aaPredicted RBP21.73■■□□□ 1.07
CLN3-250ENST00000636839 SNTG2Q9NY99 539 aa21.73■■□□□ 1.07
CLN3-250ENST00000636839 KBTBD13C9JR72 458 aa21.73■■□□□ 1.07
CLN3-250ENST00000636839 M0QZ92 97 aa21.73■■□□□ 1.07
CLN3-250ENST00000636839 CST3P01034 146 aaPredicted RBP21.73■■□□□ 1.07
CLN3-250ENST00000636839 HLA-DRAP01903 254 aa21.73■■□□□ 1.07
CLN3-250ENST00000636839 NFICP08651 508 aa21.73■■□□□ 1.07
CLN3-250ENST00000636839 CLTAP09496 248 aa21.73■■□□□ 1.07
CLN3-250ENST00000636839 LBX1P52954 281 aa21.73■■□□□ 1.07
CLN3-250ENST00000636839 DRAP1Q14919 205 aaPredicted RBP21.73■■□□□ 1.07
CLN3-250ENST00000636839 UBXN11Q5T124 520 aa21.73■■□□□ 1.07
CLN3-250ENST00000636839 SLC27A1Q6PCB7 646 aa21.73■■□□□ 1.07
CLN3-250ENST00000636839 SLC43A3Q8NBI5 491 aa21.73■■□□□ 1.07
CLN3-250ENST00000636839 ADPGKQ9BRR6 497 aa21.73■■□□□ 1.07
CLN3-250ENST00000636839 NXF3Q9H4D5 531 aaKnown RBP21.73■■□□□ 1.07
CLN3-250ENST00000636839 ZNHIT6Q9NWK9 470 aaKnown RBP21.73■■□□□ 1.07
CLN3-250ENST00000636839 MKI67P46013 3256 aaKnown RBP21.73■■□□□ 1.07
CLN3-250ENST00000636839 NCBP1Q09161 790 aaKnown RBP21.72■■□□□ 1.07
CLN3-250ENST00000636839 NFX1Q12986 1120 aaKnown RBP21.72■■□□□ 1.07
CLN3-250ENST00000636839 RNF39Q9H2S5 420 aa21.72■■□□□ 1.07
CLN3-250ENST00000636839 FBXL5Q9UKA1 691 aa21.72■■□□□ 1.07
CLN3-250ENST00000636839 ST3GAL5Q9UNP4 418 aa21.72■■□□□ 1.07
CLN3-250ENST00000636839 PTK7Q13308 1070 aa21.72■■□□□ 1.07
CLN3-250ENST00000636839 ZNF618Q5T7W0 954 aa21.72■■□□□ 1.07
CLN3-250ENST00000636839 JADE1Q6IE81 842 aa21.72■■□□□ 1.07
CLN3-250ENST00000636839 IRF2BP2Q7Z5L9 587 aa21.72■■□□□ 1.07
CLN3-250ENST00000636839 RPAINQ86UA6 219 aa21.72■■□□□ 1.07
CLN3-250ENST00000636839 WDR49Q8IV35 697 aa21.72■■□□□ 1.07
CLN3-250ENST00000636839 KREMEN1Q96MU8 473 aa21.72■■□□□ 1.07
CLN3-250ENST00000636839 APOL6Q9BWW8 343 aa21.72■■□□□ 1.07
CLN3-250ENST00000636839 F8VZ95 297 aa21.71■■□□□ 1.07
CLN3-250ENST00000636839 FOXN3O00409 490 aaPredicted RBP21.71■■□□□ 1.07
CLN3-250ENST00000636839 RPS6KA5O75582 802 aa21.71■■□□□ 1.07
CLN3-250ENST00000636839 GFPT2O94808 682 aa21.71■■□□□ 1.07
CLN3-250ENST00000636839 AKAP5P24588 427 aa21.71■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms