RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 SLC18A3Q16572 532 aa11.43□□□□□ -0.58
CLN3-248ENST00000636355 TMEM132AQ24JP5 1023 aa11.43□□□□□ -0.58
CLN3-248ENST00000636355 ASTE1Q2TB18 679 aaPredicted RBP11.43□□□□□ -0.58
CLN3-248ENST00000636355 ARHGAP29Q52LW3 1261 aa11.43□□□□□ -0.58
CLN3-248ENST00000636355 CCSAPQ6IQ19 270 aaPredicted RBP11.43□□□□□ -0.58
CLN3-248ENST00000636355 NOTUMQ6P988 496 aa11.43□□□□□ -0.58
CLN3-248ENST00000636355 SV2AQ7L0J3 742 aa11.43□□□□□ -0.58
CLN3-248ENST00000636355 RNF180Q86T96 592 aa11.43□□□□□ -0.58
CLN3-248ENST00000636355 C17orf53Q8N3J3 647 aaPredicted RBP11.43□□□□□ -0.58
CLN3-248ENST00000636355 CCDC127Q96BQ5 260 aa11.43□□□□□ -0.58
CLN3-248ENST00000636355 CHP1Q99653 195 aa11.43□□□□□ -0.58
CLN3-248ENST00000636355 TCHPQ9BT92 498 aa11.43□□□□□ -0.58
CLN3-248ENST00000636355 IMPG2Q9BZV3 1241 aa11.43□□□□□ -0.58
CLN3-248ENST00000636355 PDZD7Q9H5P4 517 aa11.43□□□□□ -0.58
CLN3-248ENST00000636355 MINDY3Q9H8M7 445 aa11.43□□□□□ -0.58
CLN3-248ENST00000636355 RAB20Q9NX57 234 aa11.43□□□□□ -0.58
CLN3-248ENST00000636355 PAXBP1Q9Y5B6 917 aa11.43□□□□□ -0.58
CLN3-248ENST00000636355 M0QZ92 97 aa11.42□□□□□ -0.58
CLN3-248ENST00000636355 B4GALT5O43286 388 aa11.42□□□□□ -0.58
CLN3-248ENST00000636355 AKR1B10O60218 316 aa11.42□□□□□ -0.58
CLN3-248ENST00000636355 KIF5CO60282 957 aa11.42□□□□□ -0.58
CLN3-248ENST00000636355 GJB1P08034 283 aa11.42□□□□□ -0.58
CLN3-248ENST00000636355 DLATP10515 647 aaKnown RBP11.42□□□□□ -0.58
CLN3-248ENST00000636355 ACTN1P12814 892 aa11.42□□□□□ -0.58
CLN3-248ENST00000636355 TNNT1P13805 278 aa11.42□□□□□ -0.58
CLN3-248ENST00000636355 ARF4P18085 180 aaPredicted RBP11.42□□□□□ -0.58
CLN3-248ENST00000636355 TNNI1P19237 187 aa11.42□□□□□ -0.58
CLN3-248ENST00000636355 EIF4BP23588 611 aaKnown RBP11.42□□□□□ -0.58
CLN3-248ENST00000636355 GRM5P41594 1212 aa11.42□□□□□ -0.58
CLN3-248ENST00000636355 PIK3CAP42336 1068 aa11.42□□□□□ -0.58
CLN3-248ENST00000636355 ACOT2P49753 483 aa11.42□□□□□ -0.58
CLN3-248ENST00000636355 CRYBB1P53674 252 aaPredicted RBP11.42□□□□□ -0.58
CLN3-248ENST00000636355 TERF1P54274 439 aa11.42□□□□□ -0.58
CLN3-248ENST00000636355 BEX3Q00994 111 aa11.42□□□□□ -0.58
CLN3-248ENST00000636355 MAP2K1Q02750 393 aaPredicted RBP11.42□□□□□ -0.58
CLN3-248ENST00000636355 MTF1Q14872 753 aa11.42□□□□□ -0.58
CLN3-248ENST00000636355 DNTTIP2Q5QJE6 756 aaKnown RBP11.42□□□□□ -0.58
CLN3-248ENST00000636355 SLC27A1Q6PCB7 646 aa11.42□□□□□ -0.58
CLN3-248ENST00000636355 SERINC5Q86VE9 423 aa11.42□□□□□ -0.58
CLN3-248ENST00000636355 ZSWIM2Q8NEG5 633 aa11.42□□□□□ -0.58
CLN3-248ENST00000636355 KIF18AQ8NI77 898 aa11.42□□□□□ -0.58
CLN3-248ENST00000636355 SHC3Q92529 594 aa11.42□□□□□ -0.58
CLN3-248ENST00000636355 TAF4BQ92750 862 aa11.42□□□□□ -0.58
CLN3-248ENST00000636355 DESI2Q9BSY9 194 aa11.42□□□□□ -0.58
CLN3-248ENST00000636355 IFIH1Q9BYX4 1025 aaKnown RBP11.42□□□□□ -0.58
CLN3-248ENST00000636355 PDE11AQ9HCR9 933 aa11.42□□□□□ -0.58
CLN3-248ENST00000636355 DNAJC12Q9UKB3 198 aa11.42□□□□□ -0.58
CLN3-248ENST00000636355 INTUQ9ULD6 942 aa11.42□□□□□ -0.58
CLN3-248ENST00000636355 DERAQ9Y315 318 aa11.42□□□□□ -0.58
CLN3-248ENST00000636355 C2CD2Q9Y426 696 aa11.42□□□□□ -0.58
CLN3-248ENST00000636355 MYADML2A6NDP7 307 aa11.41□□□□□ -0.58
CLN3-248ENST00000636355 C4BPAP04003 597 aaKnown RBP11.41□□□□□ -0.58
CLN3-248ENST00000636355 IQCF3P0C7M6 154 aa11.41□□□□□ -0.58
CLN3-248ENST00000636355 ELNP15502 786 aa11.41□□□□□ -0.58
CLN3-248ENST00000636355 EIF4A3P38919 411 aaKnown RBP11.41□□□□□ -0.58
CLN3-248ENST00000636355 DRAP1Q14919 205 aaPredicted RBP11.41□□□□□ -0.58
CLN3-248ENST00000636355 SNX17Q15036 470 aa11.41□□□□□ -0.58
CLN3-248ENST00000636355 DUOXA2Q1HG44 320 aa11.41□□□□□ -0.58
CLN3-248ENST00000636355 WDR44Q5JSH3 913 aa11.41□□□□□ -0.58
CLN3-248ENST00000636355 TDRD10Q5VZ19 366 aaKnown RBP11.41□□□□□ -0.58
CLN3-248ENST00000636355 IRF2BP2Q7Z5L9 587 aa11.41□□□□□ -0.58
CLN3-248ENST00000636355 KIAA1328Q86T90 577 aa11.41□□□□□ -0.58
CLN3-248ENST00000636355 TAS1R2Q8TE23 839 aa11.41□□□□□ -0.58
CLN3-248ENST00000636355 ANKRD36BP1Q96IX9 119 aa11.41□□□□□ -0.58
CLN3-248ENST00000636355 ZBTB45Q96K62 511 aaPredicted RBP11.41□□□□□ -0.58
CLN3-248ENST00000636355 FAM49AQ9H0Q0 323 aaPredicted RBP11.41□□□□□ -0.58
CLN3-248ENST00000636355 RPF1Q9H9Y2 349 aaKnown RBP11.41□□□□□ -0.58
CLN3-248ENST00000636355 PLEKHA5Q9HAU0 1116 aa11.41□□□□□ -0.58
CLN3-248ENST00000636355 TRMT1Q9NXH9 659 aaKnown RBP11.41□□□□□ -0.58
CLN3-248ENST00000636355 HDAC6Q9UBN7 1215 aa11.41□□□□□ -0.58
CLN3-248ENST00000636355 MROH7Q68CQ1 1323 aa11.4□□□□□ -0.58
CLN3-248ENST00000636355 TTLL13PA6NNM8 815 aa11.4□□□□□ -0.58
CLN3-248ENST00000636355 BTNL10A8MVZ5 291 aa11.4□□□□□ -0.58
CLN3-248ENST00000636355 PJA2O43164 708 aa11.4□□□□□ -0.58
CLN3-248ENST00000636355 EVI5O60447 810 aa11.4□□□□□ -0.58
CLN3-248ENST00000636355 ECM2O94769 699 aaPredicted RBP11.4□□□□□ -0.58
CLN3-248ENST00000636355 PGK1P00558 417 aa11.4□□□□□ -0.58
CLN3-248ENST00000636355 HLA-DRAP01903 254 aa11.4□□□□□ -0.58
CLN3-248ENST00000636355 TNNC2P02585 160 aa11.4□□□□□ -0.58
CLN3-248ENST00000636355 INHAP05111 366 aa11.4□□□□□ -0.58
CLN3-248ENST00000636355 ASGR1P07306 291 aa11.4□□□□□ -0.58
CLN3-248ENST00000636355 TMEM191BP0C7N4 346 aa11.4□□□□□ -0.58
CLN3-248ENST00000636355 HSPA8P11142 646 aaKnown RBP11.4□□□□□ -0.58
CLN3-248ENST00000636355 CCND3P30281 292 aaPredicted RBP11.4□□□□□ -0.58
CLN3-248ENST00000636355 GRK4P32298 578 aa11.4□□□□□ -0.58
CLN3-248ENST00000636355 MRPS6P82932 125 aaKnown RBP11.4□□□□□ -0.58
CLN3-248ENST00000636355 CAP1Q01518 475 aa11.4□□□□□ -0.58
CLN3-248ENST00000636355 KIF5AQ12840 1032 aa11.4□□□□□ -0.58
CLN3-248ENST00000636355 ENOX2Q16206 610 aaKnown RBP11.4□□□□□ -0.58
CLN3-248ENST00000636355 KIZQ2M2Z5 673 aa11.4□□□□□ -0.58
CLN3-248ENST00000636355 NBPF20Q3BBV1 942 aa11.4□□□□□ -0.58
CLN3-248ENST00000636355 PHLDB3Q6NSJ2 640 aa11.4□□□□□ -0.58
CLN3-248ENST00000636355 RUFY4Q6ZNE9 571 aa11.4□□□□□ -0.58
CLN3-248ENST00000636355 CATSPER4Q7RTX7 472 aa11.4□□□□□ -0.58
CLN3-248ENST00000636355 FAM71AQ8IYT1 594 aa11.4□□□□□ -0.58
CLN3-248ENST00000636355 ACRBPQ8NEB7 543 aa11.4□□□□□ -0.58
CLN3-248ENST00000636355 HELQQ8TDG4 1101 aa11.4□□□□□ -0.58
CLN3-248ENST00000636355 ZNF296Q8WUU4 475 aaPredicted RBP11.4□□□□□ -0.58
CLN3-248ENST00000636355 CALR3Q96L12 384 aaKnown RBP11.4□□□□□ -0.58
CLN3-248ENST00000636355 SYT11Q9BT88 431 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 151.2 ms