RNA–Protein interactions for RNA: ENST00000634712.2

LINC00339-207, long intergenic non-protein coding RNA 339, humanhuman

TSL 5

Gene LINC00339, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-207ENST00000634712 PTPN14Q15678 1187 aa17.15■□□□□ 0.34
LINC00339-207ENST00000634712 HERC4Q5GLZ8 1057 aaPredicted RBP17.15■□□□□ 0.34
LINC00339-207ENST00000634712 GLRA4Q5JXX5 417 aa17.15■□□□□ 0.34
LINC00339-207ENST00000634712 SHC4Q6S5L8 630 aa17.15■□□□□ 0.34
LINC00339-207ENST00000634712 PPFIBP1Q86W92 1011 aa17.15■□□□□ 0.34
LINC00339-207ENST00000634712 SFR1Q86XK3 245 aa17.15■□□□□ 0.34
LINC00339-207ENST00000634712 KCNN1Q92952 543 aa17.15■□□□□ 0.34
LINC00339-207ENST00000634712 NECAB3Q96P71 396 aaPredicted RBP17.15■□□□□ 0.34
LINC00339-207ENST00000634712 HERC2P3Q9BVR0 1158 aa17.15■□□□□ 0.34
LINC00339-207ENST00000634712 SLC38A7Q9NVC3 462 aa17.15■□□□□ 0.34
LINC00339-207ENST00000634712 SMIM28A0A1B0GU29 152 aa17.15■□□□□ 0.34
LINC00339-207ENST00000634712 F8W810 466 aa17.15■□□□□ 0.34
LINC00339-207ENST00000634712 ABLIM1O14639 778 aa17.15■□□□□ 0.34
LINC00339-207ENST00000634712 MBTPS2O43462 519 aa17.15■□□□□ 0.34
LINC00339-207ENST00000634712 GLUD2P49448 558 aa17.15■□□□□ 0.34
LINC00339-207ENST00000634712 RBM10P98175 930 aaKnown RBP17.15■□□□□ 0.34
LINC00339-207ENST00000634712 COASYQ13057 564 aa17.15■□□□□ 0.34
LINC00339-207ENST00000634712 KYAT1Q16773 422 aa17.15■□□□□ 0.34
LINC00339-207ENST00000634712 USP41Q3LFD5 358 aa17.15■□□□□ 0.34
LINC00339-207ENST00000634712 AXDND1Q5T1B0 1012 aaPredicted RBP17.15■□□□□ 0.34
LINC00339-207ENST00000634712 FUT10Q6P4F1 479 aa17.15■□□□□ 0.34
LINC00339-207ENST00000634712 TMEM184AQ6ZMB5 413 aa17.15■□□□□ 0.34
LINC00339-207ENST00000634712 TAS1R1Q7RTX1 841 aa17.15■□□□□ 0.34
LINC00339-207ENST00000634712 ZNF720Q7Z2F6 126 aa17.15■□□□□ 0.34
LINC00339-207ENST00000634712 CCDC65Q8IXS2 484 aa17.15■□□□□ 0.34
LINC00339-207ENST00000634712 DNAJC19Q96DA6 116 aa17.15■□□□□ 0.34
LINC00339-207ENST00000634712 MSLNLQ96KJ4 702 aa17.15■□□□□ 0.34
LINC00339-207ENST00000634712 SPATA32Q96LK8 384 aa17.15■□□□□ 0.34
LINC00339-207ENST00000634712 UROC1Q96N76 676 aa17.15■□□□□ 0.34
LINC00339-207ENST00000634712 PYM1Q9BRP8 204 aaKnown RBP17.15■□□□□ 0.34
LINC00339-207ENST00000634712 CXCL16Q9H2A7 254 aa17.15■□□□□ 0.34
LINC00339-207ENST00000634712 TNMDQ9H2S6 317 aa17.15■□□□□ 0.34
LINC00339-207ENST00000634712 ST6GALNAC4Q9H4F1 302 aa17.15■□□□□ 0.34
LINC00339-207ENST00000634712 PANK4Q9NVE7 773 aa17.15■□□□□ 0.34
LINC00339-207ENST00000634712 TBC1D7Q9P0N9 293 aa17.15■□□□□ 0.34
LINC00339-207ENST00000634712 CACNG4Q9UBN1 327 aa17.15■□□□□ 0.34
LINC00339-207ENST00000634712 SF3B1O75533 1304 aaKnown RBP eCLIP17.14■□□□□ 0.33
LINC00339-207ENST00000634712 CUL9Q8IWT3 2517 aa17.14■□□□□ 0.33
LINC00339-207ENST00000634712 SPDYE4A6NLX3 237 aa17.14■□□□□ 0.33
LINC00339-207ENST00000634712 POLR2DO15514 142 aaKnown RBP17.14■□□□□ 0.33
LINC00339-207ENST00000634712 PIGRP01833 764 aa17.14■□□□□ 0.33
LINC00339-207ENST00000634712 CLTAP09496 248 aa17.14■□□□□ 0.33
LINC00339-207ENST00000634712 HOXB8P17481 243 aaPredicted RBP17.14■□□□□ 0.33
LINC00339-207ENST00000634712 TPRNQ4KMQ1 711 aa17.14■□□□□ 0.33
LINC00339-207ENST00000634712 SEZ6Q53EL9 994 aa17.14■□□□□ 0.33
LINC00339-207ENST00000634712 ZC2HC1CQ53FD0 456 aaPredicted RBP17.14■□□□□ 0.33
LINC00339-207ENST00000634712 ANKRD54Q6NXT1 300 aa17.14■□□□□ 0.33
LINC00339-207ENST00000634712 ALKAL1Q6UXT8 129 aa17.14■□□□□ 0.33
LINC00339-207ENST00000634712 MAP4K3Q8IVH8 894 aa17.14■□□□□ 0.33
LINC00339-207ENST00000634712 VN1R2Q8NFZ6 395 aa17.14■□□□□ 0.33
LINC00339-207ENST00000634712 HASPINQ8TF76 798 aa17.14■□□□□ 0.33
LINC00339-207ENST00000634712 STAMQ92783 540 aa17.14■□□□□ 0.33
LINC00339-207ENST00000634712 SNX27Q96L92 541 aa17.14■□□□□ 0.33
LINC00339-207ENST00000634712 KLHL5Q96PQ7 755 aa17.14■□□□□ 0.33
LINC00339-207ENST00000634712 PPP1R10Q96QC0 940 aaKnown RBP17.14■□□□□ 0.33
LINC00339-207ENST00000634712 FIZ1Q96SL8 496 aa17.14■□□□□ 0.33
LINC00339-207ENST00000634712 PAAF1Q9BRP4 392 aa17.14■□□□□ 0.33
LINC00339-207ENST00000634712 GPR62Q9BZJ7 368 aa17.14■□□□□ 0.33
LINC00339-207ENST00000634712 EXOC7Q9UPT5 735 aa17.14■□□□□ 0.33
LINC00339-207ENST00000634712 ZDHHC9Q9Y397 364 aa17.14■□□□□ 0.33
LINC00339-207ENST00000634712 PCDHB13Q9Y5F0 798 aa17.14■□□□□ 0.33
LINC00339-207ENST00000634712 HCFC2Q9Y5Z7 792 aa17.14■□□□□ 0.33
LINC00339-207ENST00000634712 GCNT3O95395 438 aa17.13■□□□□ 0.33
LINC00339-207ENST00000634712 SSTR3P32745 418 aaPredicted RBP17.13■□□□□ 0.33
LINC00339-207ENST00000634712 ELAVL2Q12926 359 aaKnown RBP17.13■□□□□ 0.33
LINC00339-207ENST00000634712 NAB2Q15742 525 aa17.13■□□□□ 0.33
LINC00339-207ENST00000634712 SMAD2Q15796 467 aaKnown RBP17.13■□□□□ 0.33
LINC00339-207ENST00000634712 XKR4Q5GH76 650 aa17.13■□□□□ 0.33
LINC00339-207ENST00000634712 RESP18Q5W5W9 173 aa17.13■□□□□ 0.33
LINC00339-207ENST00000634712 SLFN12LQ6IEE8 588 aa17.13■□□□□ 0.33
LINC00339-207ENST00000634712 DCLRE1AQ6PJP8 1040 aa17.13■□□□□ 0.33
LINC00339-207ENST00000634712 SMRP1Q8NCR6 262 aa17.13■□□□□ 0.33
LINC00339-207ENST00000634712 HVCN1Q96D96 273 aa17.13■□□□□ 0.33
LINC00339-207ENST00000634712 DDX27Q96GQ7 796 aaKnown RBP17.13■□□□□ 0.33
LINC00339-207ENST00000634712 MSTO1Q9BUK6 570 aa17.13■□□□□ 0.33
LINC00339-207ENST00000634712 PLEKHA5Q9HAU0 1116 aa17.13■□□□□ 0.33
LINC00339-207ENST00000634712 OGTO15294 1046 aa17.12■□□□□ 0.33
LINC00339-207ENST00000634712 B3GAT3O94766 335 aa17.12■□□□□ 0.33
LINC00339-207ENST00000634712 KIF4AO95239 1232 aa17.12■□□□□ 0.33
LINC00339-207ENST00000634712 ADH1AP07327 375 aa17.12■□□□□ 0.33
LINC00339-207ENST00000634712 CNPP09543 421 aaKnown RBP17.12■□□□□ 0.33
LINC00339-207ENST00000634712 KCNE1P15382 129 aa17.12■□□□□ 0.33
LINC00339-207ENST00000634712 CLCNKBP51801 687 aa17.12■□□□□ 0.33
LINC00339-207ENST00000634712 DSG1Q02413 1049 aa17.12■□□□□ 0.33
LINC00339-207ENST00000634712 KCNC3Q14003 757 aa17.12■□□□□ 0.33
LINC00339-207ENST00000634712 E2F4Q16254 413 aa17.12■□□□□ 0.33
LINC00339-207ENST00000634712 FAM171A1Q5VUB5 890 aa17.12■□□□□ 0.33
LINC00339-207ENST00000634712 KIAA0319Q5VV43 1072 aa17.12■□□□□ 0.33
LINC00339-207ENST00000634712 CEP57Q86XR8 500 aa17.12■□□□□ 0.33
LINC00339-207ENST00000634712 SYCP3Q8IZU3 236 aa17.12■□□□□ 0.33
LINC00339-207ENST00000634712 RIN2Q8WYP3 895 aaPredicted RBP17.12■□□□□ 0.33
LINC00339-207ENST00000634712 ACCSQ96QU6 501 aa17.12■□□□□ 0.33
LINC00339-207ENST00000634712 APOL5Q9BWW9 433 aa17.12■□□□□ 0.33
LINC00339-207ENST00000634712 RPF1Q9H9Y2 349 aaKnown RBP17.12■□□□□ 0.33
LINC00339-207ENST00000634712 MAGEF1Q9HAY2 307 aa17.12■□□□□ 0.33
LINC00339-207ENST00000634712 OLFML3Q9NRN5 406 aa17.12■□□□□ 0.33
LINC00339-207ENST00000634712 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.12■□□□□ 0.33
LINC00339-207ENST00000634712 CHST7Q9NS84 486 aa17.12■□□□□ 0.33
LINC00339-207ENST00000634712 KBTBD4Q9NVX7 518 aa17.12■□□□□ 0.33
LINC00339-207ENST00000634712 CNTN3Q9P232 1028 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms