RNA–Protein interactions for RNA: ENST00000623985.3

LINC00643-206, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 864 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-206ENST00000623985 SFXN1Q9H9B4 322 aa16.24■□□□□ 0.19
LINC00643-206ENST00000623985 CHST7Q9NS84 486 aa16.24■□□□□ 0.19
LINC00643-206ENST00000623985 CACNG4Q9UBN1 327 aa16.24■□□□□ 0.19
LINC00643-206ENST00000623985 STK17AQ9UEE5 414 aa16.24■□□□□ 0.19
LINC00643-206ENST00000623985 TADA2AO75478 443 aa16.23■□□□□ 0.19
LINC00643-206ENST00000623985 TOM1L1O75674 476 aa16.23■□□□□ 0.19
LINC00643-206ENST00000623985 FAM13AO94988 1023 aa16.23■□□□□ 0.19
LINC00643-206ENST00000623985 MTHFRP42898 656 aa16.23■□□□□ 0.19
LINC00643-206ENST00000623985 DHX8Q14562 1220 aaKnown RBP16.23■□□□□ 0.19
LINC00643-206ENST00000623985 GLRA4Q5JXX5 417 aa16.23■□□□□ 0.19
LINC00643-206ENST00000623985 KIAA1841Q6NSI8 718 aa16.23■□□□□ 0.19
LINC00643-206ENST00000623985 TAS1R1Q7RTX1 841 aa16.23■□□□□ 0.19
LINC00643-206ENST00000623985 EPSTI1Q96J88 318 aa16.23■□□□□ 0.19
LINC00643-206ENST00000623985 FBXL18Q96ME1 805 aa16.23■□□□□ 0.19
LINC00643-206ENST00000623985 RIPOR3Q96MK2 946 aa16.23■□□□□ 0.19
LINC00643-206ENST00000623985 UROC1Q96N76 676 aa16.23■□□□□ 0.19
LINC00643-206ENST00000623985 USP28Q96RU2 1077 aa16.23■□□□□ 0.19
LINC00643-206ENST00000623985 GPR62Q9BZJ7 368 aa16.23■□□□□ 0.19
LINC00643-206ENST00000623985 CXCL16Q9H2A7 254 aa16.23■□□□□ 0.19
LINC00643-206ENST00000623985 PARVGQ9HBI0 331 aa16.23■□□□□ 0.19
LINC00643-206ENST00000623985 RXFP1Q9HBX9 757 aa16.23■□□□□ 0.19
LINC00643-206ENST00000623985 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.23■□□□□ 0.19
LINC00643-206ENST00000623985 ANKFY1Q9P2R3 1169 aa16.23■□□□□ 0.19
LINC00643-206ENST00000623985 CCDC39Q9UFE4 941 aa16.23■□□□□ 0.19
LINC00643-206ENST00000623985 TECTAO75443 2155 aa16.23■□□□□ 0.19
LINC00643-206ENST00000623985 TMEM189-UBE2V1I3L0A0 370 aa16.22■□□□□ 0.19
LINC00643-206ENST00000623985 K7ENM7 598 aa16.22■□□□□ 0.19
LINC00643-206ENST00000623985 TEX28O15482 410 aa16.22■□□□□ 0.19
LINC00643-206ENST00000623985 GPR37L1O60883 481 aa16.22■□□□□ 0.19
LINC00643-206ENST00000623985 TBCAO75347 108 aaKnown RBP16.22■□□□□ 0.19
LINC00643-206ENST00000623985 KRT18P05783 430 aaKnown RBP16.22■□□□□ 0.19
LINC00643-206ENST00000623985 PDIA4P13667 645 aaKnown RBP16.22■□□□□ 0.19
LINC00643-206ENST00000623985 ABCD1P33897 745 aa16.22■□□□□ 0.19
LINC00643-206ENST00000623985 CEBPZQ03701 1054 aaKnown RBP16.22■□□□□ 0.19
LINC00643-206ENST00000623985 ELAVL2Q12926 359 aaKnown RBP16.22■□□□□ 0.19
LINC00643-206ENST00000623985 XKR4Q5GH76 650 aa16.22■□□□□ 0.19
LINC00643-206ENST00000623985 HERC4Q5GLZ8 1057 aaPredicted RBP16.22■□□□□ 0.19
LINC00643-206ENST00000623985 TMEM31Q5JXX7 168 aa16.22■□□□□ 0.19
LINC00643-206ENST00000623985 SPECC1Q5M775 1068 aa16.22■□□□□ 0.19
LINC00643-206ENST00000623985 RARS2Q5T160 578 aaKnown RBP16.22■□□□□ 0.19
LINC00643-206ENST00000623985 ELMSAN1Q6PJG2 1045 aa16.22■□□□□ 0.19
LINC00643-206ENST00000623985 ZBTB33Q86T24 672 aa16.22■□□□□ 0.19
LINC00643-206ENST00000623985 RNF135Q8IUD6 432 aa16.22■□□□□ 0.19
LINC00643-206ENST00000623985 HASPINQ8TF76 798 aa16.22■□□□□ 0.19
LINC00643-206ENST00000623985 RABGGTAQ92696 567 aa16.22■□□□□ 0.19
LINC00643-206ENST00000623985 SNX27Q96L92 541 aa16.22■□□□□ 0.19
LINC00643-206ENST00000623985 TCHPQ9BT92 498 aa16.22■□□□□ 0.19
LINC00643-206ENST00000623985 POMKQ9H5K3 350 aa16.22■□□□□ 0.19
LINC00643-206ENST00000623985 DPP7Q9UHL4 492 aa16.22■□□□□ 0.19
LINC00643-206ENST00000623985 NR2E1Q9Y466 385 aa16.22■□□□□ 0.19
LINC00643-206ENST00000623985 SCN1AP35498 2009 aa16.21■□□□□ 0.19
LINC00643-206ENST00000623985 SPDYE4A6NLX3 237 aa16.21■□□□□ 0.19
LINC00643-206ENST00000623985 GLUD1P00367 558 aa16.21■□□□□ 0.19
LINC00643-206ENST00000623985 C1RP00736 705 aa16.21■□□□□ 0.19
LINC00643-206ENST00000623985 HSP90AA1P07900 732 aaKnown RBP16.21■□□□□ 0.19
LINC00643-206ENST00000623985 HARSP12081 509 aaKnown RBP16.21■□□□□ 0.19
LINC00643-206ENST00000623985 DDIT3P35638 169 aa16.21■□□□□ 0.19
LINC00643-206ENST00000623985 NASPP49321 788 aaPredicted RBP16.21■□□□□ 0.19
LINC00643-206ENST00000623985 OSTNP61366 133 aa16.21■□□□□ 0.19
LINC00643-206ENST00000623985 MCL1Q07820 350 aa16.21■□□□□ 0.19
LINC00643-206ENST00000623985 SLC39A14Q15043 492 aa16.21■□□□□ 0.19
LINC00643-206ENST00000623985 ALKAL1Q6UXT8 129 aa16.21■□□□□ 0.19
LINC00643-206ENST00000623985 USP49Q70CQ1 688 aa16.21■□□□□ 0.19
LINC00643-206ENST00000623985 HAUS6Q7Z4H7 955 aa16.21■□□□□ 0.19
LINC00643-206ENST00000623985 MYCT1Q8N699 235 aa16.21■□□□□ 0.19
LINC00643-206ENST00000623985 KRI1Q8N9T8 703 aaKnown RBP16.21■□□□□ 0.19
LINC00643-206ENST00000623985 BICD1Q96G01 975 aa16.21■□□□□ 0.19
LINC00643-206ENST00000623985 RPGRIP1Q96KN7 1286 aa16.21■□□□□ 0.19
LINC00643-206ENST00000623985 B3GALT6Q96L58 329 aa16.21■□□□□ 0.19
LINC00643-206ENST00000623985 ACAP3Q96P50 834 aa16.21■□□□□ 0.19
LINC00643-206ENST00000623985 C11orf16Q9NQ32 467 aa16.21■□□□□ 0.19
LINC00643-206ENST00000623985 MAN1C1Q9NR34 630 aa16.21■□□□□ 0.19
LINC00643-206ENST00000623985 SLC38A7Q9NVC3 462 aa16.21■□□□□ 0.19
LINC00643-206ENST00000623985 CNTN3Q9P232 1028 aa16.21■□□□□ 0.19
LINC00643-206ENST00000623985 FNIP2Q9P278 1114 aa16.21■□□□□ 0.19
LINC00643-206ENST00000623985 MUTYHQ9UIF7 546 aa16.21■□□□□ 0.19
LINC00643-206ENST00000623985 CDH22Q9UJ99 828 aa16.21■□□□□ 0.19
LINC00643-206ENST00000623985 ZNF318Q5VUA4 2279 aa16.21■□□□□ 0.19
LINC00643-206ENST00000623985 NOTCH4Q99466 2003 aa16.2■□□□□ 0.18
LINC00643-206ENST00000623985 SMIM28A0A1B0GU29 152 aa16.2■□□□□ 0.18
LINC00643-206ENST00000623985 CLDN3O15551 220 aa16.2■□□□□ 0.18
LINC00643-206ENST00000623985 TRAK2O60296 914 aa16.2■□□□□ 0.18
LINC00643-206ENST00000623985 PIGRP01833 764 aa16.2■□□□□ 0.18
LINC00643-206ENST00000623985 UPP1Q16831 310 aa16.2■□□□□ 0.18
LINC00643-206ENST00000623985 RTP2Q5QGT7 225 aa16.2■□□□□ 0.18
LINC00643-206ENST00000623985 PDXDC1Q6P996 788 aa16.2■□□□□ 0.18
LINC00643-206ENST00000623985 C15orf39Q6ZRI6 1047 aa16.2■□□□□ 0.18
LINC00643-206ENST00000623985 C12orf76Q8N812 135 aaPredicted RBP16.2■□□□□ 0.18
LINC00643-206ENST00000623985 RIN2Q8WYP3 895 aaPredicted RBP16.2■□□□□ 0.18
LINC00643-206ENST00000623985 ZBTB45Q96K62 511 aaPredicted RBP16.2■□□□□ 0.18
LINC00643-206ENST00000623985 CLIC6Q96NY7 704 aa16.2■□□□□ 0.18
LINC00643-206ENST00000623985 TTPALQ9BTX7 342 aa16.2■□□□□ 0.18
LINC00643-206ENST00000623985 WDFY4Q6ZS81 3184 aa16.2■□□□□ 0.18
LINC00643-206ENST00000623985 FAM86C2PA6NEL3 165 aa16.19■□□□□ 0.18
LINC00643-206ENST00000623985 HNRNPDLO14979 420 aaKnown RBP16.19■□□□□ 0.18
LINC00643-206ENST00000623985 KCNE1P15382 129 aa16.19■□□□□ 0.18
LINC00643-206ENST00000623985 MATR3P43243 847 aaKnown RBP eCLIP16.19■□□□□ 0.18
LINC00643-206ENST00000623985 LIG4P49917 911 aa16.19■□□□□ 0.18
LINC00643-206ENST00000623985 CLCNKBP51801 687 aa16.19■□□□□ 0.18
LINC00643-206ENST00000623985 STK38Q15208 465 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms