RNA–Protein interactions for RNA: ENST00000621245.4

CPNE3-210, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 581 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-210ENST00000621245 GLRA4Q5JXX5 417 aa12.64□□□□□ -0.39
CPNE3-210ENST00000621245 ERICH6BQ5W0A0 696 aa12.64□□□□□ -0.39
CPNE3-210ENST00000621245 CWF19L1Q69YN2 538 aaKnown RBP12.64□□□□□ -0.39
CPNE3-210ENST00000621245 CCDC149Q6ZUS6 474 aa12.64□□□□□ -0.39
CPNE3-210ENST00000621245 KCNK18Q7Z418 384 aa12.64□□□□□ -0.39
CPNE3-210ENST00000621245 PPFIBP1Q86W92 1011 aa12.64□□□□□ -0.39
CPNE3-210ENST00000621245 DAW1Q8N136 415 aa12.64□□□□□ -0.39
CPNE3-210ENST00000621245 TMEM130Q8N3G9 435 aa12.64□□□□□ -0.39
CPNE3-210ENST00000621245 CEP120Q8N960 986 aa12.64□□□□□ -0.39
CPNE3-210ENST00000621245 MCPH1Q8NEM0 835 aa12.64□□□□□ -0.39
CPNE3-210ENST00000621245 RIN2Q8WYP3 895 aaPredicted RBP12.64□□□□□ -0.39
CPNE3-210ENST00000621245 NACC1Q96RE7 527 aa12.64□□□□□ -0.39
CPNE3-210ENST00000621245 MYADMQ96S97 322 aa12.64□□□□□ -0.39
CPNE3-210ENST00000621245 LLPHQ9BRT6 129 aaKnown RBP12.64□□□□□ -0.39
CPNE3-210ENST00000621245 PRMT7Q9NVM4 692 aaPredicted RBP12.64□□□□□ -0.39
CPNE3-210ENST00000621245 ADAM28Q9UKQ2 775 aa12.64□□□□□ -0.39
CPNE3-210ENST00000621245 CARNS1A5YM72 827 aa12.63□□□□□ -0.39
CPNE3-210ENST00000621245 E9PMD0 336 aa12.63□□□□□ -0.39
CPNE3-210ENST00000621245 MEFVO15553 781 aaPredicted RBP12.63□□□□□ -0.39
CPNE3-210ENST00000621245 GLUD1P00367 558 aa12.63□□□□□ -0.39
CPNE3-210ENST00000621245 CCT6AP40227 531 aaKnown RBP12.63□□□□□ -0.39
CPNE3-210ENST00000621245 PTPN5P54829 565 aa12.63□□□□□ -0.39
CPNE3-210ENST00000621245 PRPF4BQ13523 1007 aaKnown RBP12.63□□□□□ -0.39
CPNE3-210ENST00000621245 HSP90AA2PQ14568 343 aaPredicted RBP12.63□□□□□ -0.39
CPNE3-210ENST00000621245 TAS1R3Q7RTX0 852 aa12.63□□□□□ -0.39
CPNE3-210ENST00000621245 ZBTB8OSQ8IWT0 167 aa12.63□□□□□ -0.39
CPNE3-210ENST00000621245 RUSC1Q9BVN2 902 aa12.63□□□□□ -0.39
CPNE3-210ENST00000621245 REPIN1Q9BWE0 567 aaKnown RBP12.63□□□□□ -0.39
CPNE3-210ENST00000621245 BHMT2Q9H2M3 363 aa12.63□□□□□ -0.39
CPNE3-210ENST00000621245 DDX19AQ9NUU7 478 aaKnown RBP12.63□□□□□ -0.39
CPNE3-210ENST00000621245 KIAA1024Q9UPX6 916 aa12.63□□□□□ -0.39
CPNE3-210ENST00000621245 USTQ9Y2C2 406 aa12.63□□□□□ -0.39
CPNE3-210ENST00000621245 GDAQ9Y2T3 454 aa12.63□□□□□ -0.39
CPNE3-210ENST00000621245 ZMYM2Q9UBW7 1377 aa12.63□□□□□ -0.39
CPNE3-210ENST00000621245 CLUHO75153 1309 aa12.62□□□□□ -0.39
CPNE3-210ENST00000621245 MIA3Q5JRA6 1907 aa12.62□□□□□ -0.39
CPNE3-210ENST00000621245 ADH1AP07327 375 aa12.62□□□□□ -0.39
CPNE3-210ENST00000621245 NPR3P17342 541 aa12.62□□□□□ -0.39
CPNE3-210ENST00000621245 NAMPTP43490 491 aa12.62□□□□□ -0.39
CPNE3-210ENST00000621245 RBM25P49756 843 aaKnown RBP12.62□□□□□ -0.39
CPNE3-210ENST00000621245 NCBP1Q09161 790 aaKnown RBP12.62□□□□□ -0.39
CPNE3-210ENST00000621245 LILRA6Q6PI73 481 aa12.62□□□□□ -0.39
CPNE3-210ENST00000621245 CD300LGQ6UXG3 332 aa12.62□□□□□ -0.39
CPNE3-210ENST00000621245 C15orf39Q6ZRI6 1047 aa12.62□□□□□ -0.39
CPNE3-210ENST00000621245 UBALD2Q8IYN6 164 aa12.62□□□□□ -0.39
CPNE3-210ENST00000621245 IGSF22Q8N9C0 903 aa12.62□□□□□ -0.39
CPNE3-210ENST00000621245 CMASQ8NFW8 434 aaPredicted RBP12.62□□□□□ -0.39
CPNE3-210ENST00000621245 SNX29Q8TEQ0 813 aa12.62□□□□□ -0.39
CPNE3-210ENST00000621245 SLC39A7Q92504 469 aa12.62□□□□□ -0.39
CPNE3-210ENST00000621245 PRIMPOLQ96LW4 560 aa12.62□□□□□ -0.39
CPNE3-210ENST00000621245 MMTAG2Q9BU76 263 aaKnown RBP12.62□□□□□ -0.39
CPNE3-210ENST00000621245 COLEC11Q9BWP8 271 aa12.62□□□□□ -0.39
CPNE3-210ENST00000621245 KCNK12Q9HB15 430 aa12.62□□□□□ -0.39
CPNE3-210ENST00000621245 GOLGA2P5Q9HBQ8 144 aa12.62□□□□□ -0.39
CPNE3-210ENST00000621245 NPDC1Q9NQX5 325 aaPredicted RBP12.62□□□□□ -0.39
CPNE3-210ENST00000621245 TSC2P49815 1807 aa12.61□□□□□ -0.39
CPNE3-210ENST00000621245 H0Y858 1186 aa12.61□□□□□ -0.39
CPNE3-210ENST00000621245 I3L4J1 428 aa12.61□□□□□ -0.39
CPNE3-210ENST00000621245 ACKR2O00590 384 aa12.61□□□□□ -0.39
CPNE3-210ENST00000621245 N4BP3O15049 544 aa12.61□□□□□ -0.39
CPNE3-210ENST00000621245 PI15O43692 258 aa12.61□□□□□ -0.39
CPNE3-210ENST00000621245 U2AF2P26368 475 aaKnown RBP eCLIP12.61□□□□□ -0.39
CPNE3-210ENST00000621245 NTHL1P78549 312 aa12.61□□□□□ -0.39
CPNE3-210ENST00000621245 MAPK7Q13164 816 aa12.61□□□□□ -0.39
CPNE3-210ENST00000621245 ORC2Q13416 577 aaPredicted RBP12.61□□□□□ -0.39
CPNE3-210ENST00000621245 TUSC3Q13454 348 aa12.61□□□□□ -0.39
CPNE3-210ENST00000621245 MAPK6Q16659 721 aa12.61□□□□□ -0.39
CPNE3-210ENST00000621245 USP41Q3LFD5 358 aa12.61□□□□□ -0.39
CPNE3-210ENST00000621245 FAM171A1Q5VUB5 890 aa12.61□□□□□ -0.39
CPNE3-210ENST00000621245 RSPO2Q6UXX9 243 aaPredicted RBP12.61□□□□□ -0.39
CPNE3-210ENST00000621245 GET4Q7L5D6 327 aaPredicted RBP12.61□□□□□ -0.39
CPNE3-210ENST00000621245 HACE1Q8IYU2 909 aa12.61□□□□□ -0.39
CPNE3-210ENST00000621245 FAM184AQ8NB25 1140 aa12.61□□□□□ -0.39
CPNE3-210ENST00000621245 C3orf58Q8NDZ4 430 aa12.61□□□□□ -0.39
CPNE3-210ENST00000621245 DEPTORQ8TB45 409 aa12.61□□□□□ -0.39
CPNE3-210ENST00000621245 SMG7Q92540 1137 aaKnown RBP12.61□□□□□ -0.39
CPNE3-210ENST00000621245 DCBLD2Q96PD2 775 aa12.61□□□□□ -0.39
CPNE3-210ENST00000621245 CLSTN3Q9BQT9 956 aa12.61□□□□□ -0.39
CPNE3-210ENST00000621245 C2orf40Q9H1Z8 148 aa12.61□□□□□ -0.39
CPNE3-210ENST00000621245 WDR6Q9NNW5 1121 aaKnown RBP12.61□□□□□ -0.39
CPNE3-210ENST00000621245 LRWD1Q9UFC0 647 aa12.61□□□□□ -0.39
CPNE3-210ENST00000621245 SF3B1O75533 1304 aaKnown RBP eCLIP12.61□□□□□ -0.39
CPNE3-210ENST00000621245 PATJQ8NI35 1801 aa12.6□□□□□ -0.39
CPNE3-210ENST00000621245 RIF1Q5UIP0 2472 aaKnown RBP12.6□□□□□ -0.39
CPNE3-210ENST00000621245 TADA2AO75478 443 aa12.6□□□□□ -0.39
CPNE3-210ENST00000621245 PAPLNO95428 1278 aa12.6□□□□□ -0.39
CPNE3-210ENST00000621245 GBP2P32456 591 aaPredicted RBP12.6□□□□□ -0.39
CPNE3-210ENST00000621245 HMGN5P82970 282 aaKnown RBP12.6□□□□□ -0.39
CPNE3-210ENST00000621245 SOX4Q06945 474 aaPredicted RBP12.6□□□□□ -0.39
CPNE3-210ENST00000621245 GNL2Q13823 731 aaKnown RBP12.6□□□□□ -0.39
CPNE3-210ENST00000621245 ATF7IP2Q5U623 682 aa12.6□□□□□ -0.39
CPNE3-210ENST00000621245 HAUS3Q68CZ6 603 aa12.6□□□□□ -0.39
CPNE3-210ENST00000621245 OTOP3Q7RTS5 596 aa12.6□□□□□ -0.39
CPNE3-210ENST00000621245 ERMNQ8TAM6 284 aa12.6□□□□□ -0.39
CPNE3-210ENST00000621245 LNX1Q8TBB1 728 aaPredicted RBP12.6□□□□□ -0.39
CPNE3-210ENST00000621245 LRRC15Q8TF66 581 aa12.6□□□□□ -0.39
CPNE3-210ENST00000621245 ZSCAN31Q96LW9 406 aaPredicted RBP12.6□□□□□ -0.39
CPNE3-210ENST00000621245 PPP1R10Q96QC0 940 aaKnown RBP12.6□□□□□ -0.39
CPNE3-210ENST00000621245 NT5C3AQ9H0P0 336 aa12.6□□□□□ -0.39
CPNE3-210ENST00000621245 CDT1Q9H211 546 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms