RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 NOTUMQ6P988 496 aa12.04□□□□□ -0.48
CLIP1-219ENST00000620786 LZICQ8WZA0 190 aa12.04□□□□□ -0.48
CLIP1-219ENST00000620786 TAAR1Q96RJ0 339 aa12.04□□□□□ -0.48
CLIP1-219ENST00000620786 GBA2Q9HCG7 927 aaPredicted RBP12.04□□□□□ -0.48
CLIP1-219ENST00000620786 KRT14P02533 472 aa12.04□□□□□ -0.48
CLIP1-219ENST00000620786 SGSM1Q2NKQ1 1148 aa12.04□□□□□ -0.48
CLIP1-219ENST00000620786 ZC3H18Q86VM9 953 aaKnown RBP12.04□□□□□ -0.48
CLIP1-219ENST00000620786 CCNYL1Q8N7R7 359 aa12.04□□□□□ -0.48
CLIP1-219ENST00000620786 PHF20Q9BVI0 1012 aa12.04□□□□□ -0.48
CLIP1-219ENST00000620786 TRAIPQ9BWF2 469 aa12.04□□□□□ -0.48
CLIP1-219ENST00000620786 CASS4Q9NQ75 786 aa12.04□□□□□ -0.48
CLIP1-219ENST00000620786 ENTPD7Q9NQZ7 604 aa12.04□□□□□ -0.48
CLIP1-219ENST00000620786 BFARQ9NZS9 450 aa12.04□□□□□ -0.48
CLIP1-219ENST00000620786 SETBP1Q9Y6X0 1596 aa12.04□□□□□ -0.48
CLIP1-219ENST00000620786 MED14O60244 1454 aa12.03□□□□□ -0.48
CLIP1-219ENST00000620786 RIMS1Q86UR5 1692 aaKnown RBP12.03□□□□□ -0.48
CLIP1-219ENST00000620786 TBX3O15119 743 aa12.03□□□□□ -0.48
CLIP1-219ENST00000620786 ATP9BO43861 1147 aa12.03□□□□□ -0.48
CLIP1-219ENST00000620786 IFT88Q13099 833 aa12.03□□□□□ -0.48
CLIP1-219ENST00000620786 ACAD11Q709F0 780 aa12.03□□□□□ -0.48
CLIP1-219ENST00000620786 MYO3AQ8NEV4 1616 aa12.03□□□□□ -0.48
CLIP1-219ENST00000620786 CCDC151A5D8V7 595 aa12.03□□□□□ -0.48
CLIP1-219ENST00000620786 GAS2L3Q86XJ1 694 aa12.03□□□□□ -0.48
CLIP1-219ENST00000620786 ATPAF2Q8N5M1 289 aa12.03□□□□□ -0.48
CLIP1-219ENST00000620786 PPM1NQ8N819 430 aa12.03□□□□□ -0.48
CLIP1-219ENST00000620786 TEKT4Q8WW24 435 aa12.03□□□□□ -0.48
CLIP1-219ENST00000620786 ZNF512BQ96KM6 892 aaPredicted RBP12.03□□□□□ -0.48
CLIP1-219ENST00000620786 L3MBTL1Q9Y468 752 aa12.03□□□□□ -0.48
CLIP1-219ENST00000620786 PDS5AQ29RF7 1337 aaKnown RBP12.03□□□□□ -0.48
CLIP1-219ENST00000620786 HNRNPCL2B2RXH8 293 aa12.03□□□□□ -0.48
CLIP1-219ENST00000620786 HNRNPCL1O60812 293 aaKnown RBP12.03□□□□□ -0.48
CLIP1-219ENST00000620786 TBC1D19Q8N5T2 526 aa12.03□□□□□ -0.48
CLIP1-219ENST00000620786 C18orf8Q96DM3 657 aa12.03□□□□□ -0.48
CLIP1-219ENST00000620786 SRPK1Q96SB4 655 aaKnown RBP12.03□□□□□ -0.48
CLIP1-219ENST00000620786 ZNF189O75820 626 aaPredicted RBP12.03□□□□□ -0.48
CLIP1-219ENST00000620786 MYBP10242 640 aa12.03□□□□□ -0.48
CLIP1-219ENST00000620786 FMR1NBQ8N0W7 255 aaPredicted RBP12.03□□□□□ -0.48
CLIP1-219ENST00000620786 MORC4Q8TE76 937 aa12.03□□□□□ -0.48
CLIP1-219ENST00000620786 CCDC138Q96M89 665 aa12.03□□□□□ -0.48
CLIP1-219ENST00000620786 CENPKQ9BS16 269 aa12.03□□□□□ -0.48
CLIP1-219ENST00000620786 PLAAQ9Y263 795 aa12.03□□□□□ -0.48
CLIP1-219ENST00000620786 CTIFO43310 598 aaKnown RBP12.02□□□□□ -0.48
CLIP1-219ENST00000620786 SNRNP35Q16560 246 aaKnown RBP12.02□□□□□ -0.48
CLIP1-219ENST00000620786 ALS2CLQ60I27 953 aa12.02□□□□□ -0.48
CLIP1-219ENST00000620786 ANKS3Q6ZW76 656 aa12.02□□□□□ -0.48
CLIP1-219ENST00000620786 TRMT10CQ7L0Y3 403 aaKnown RBP12.02□□□□□ -0.48
CLIP1-219ENST00000620786 USP33Q8TEY7 942 aa12.02□□□□□ -0.48
CLIP1-219ENST00000620786 JMJD4Q9H9V9 463 aa12.02□□□□□ -0.48
CLIP1-219ENST00000620786 KITP10721 976 aa12.02□□□□□ -0.48
CLIP1-219ENST00000620786 AKT1P31749 480 aa12.02□□□□□ -0.48
CLIP1-219ENST00000620786 PDIA2Q13087 525 aaKnown RBP12.02□□□□□ -0.48
CLIP1-219ENST00000620786 PRMT7Q9NVM4 692 aaPredicted RBP12.02□□□□□ -0.48
CLIP1-219ENST00000620786 KLHL11Q9NVR0 708 aa12.02□□□□□ -0.48
CLIP1-219ENST00000620786 PPP1R9AQ9ULJ8 1098 aa12.02□□□□□ -0.48
CLIP1-219ENST00000620786 PACSIN2Q9UNF0 486 aaPredicted RBP12.02□□□□□ -0.48
CLIP1-219ENST00000620786 E9PCH4 1651 aa12.02□□□□□ -0.49
CLIP1-219ENST00000620786 NCK2O43639 380 aa12.02□□□□□ -0.49
CLIP1-219ENST00000620786 RTN2O75298 545 aa12.02□□□□□ -0.49
CLIP1-219ENST00000620786 SERPIND1P05546 499 aa12.02□□□□□ -0.49
CLIP1-219ENST00000620786 MAP4P27816 1152 aaKnown RBP12.02□□□□□ -0.49
CLIP1-219ENST00000620786 ARHGEF7Q14155 803 aa12.02□□□□□ -0.49
CLIP1-219ENST00000620786 STOX1Q6ZVD7 989 aa12.02□□□□□ -0.49
CLIP1-219ENST00000620786 TRIM59Q8IWR1 403 aa12.02□□□□□ -0.49
CLIP1-219ENST00000620786 UPF3AQ9H1J1 476 aaKnown RBP12.02□□□□□ -0.49
CLIP1-219ENST00000620786 TXLNGQ9NUQ3 528 aa12.02□□□□□ -0.49
CLIP1-219ENST00000620786 KCND2Q9NZV8 630 aa12.02□□□□□ -0.49
CLIP1-219ENST00000620786 ZNF609O15014 1411 aa12.02□□□□□ -0.49
CLIP1-219ENST00000620786 PTPRMP28827 1452 aa12.02□□□□□ -0.49
CLIP1-219ENST00000620786 PCSK1P29120 753 aa12.02□□□□□ -0.49
CLIP1-219ENST00000620786 VCPP55072 806 aaKnown RBP12.02□□□□□ -0.49
CLIP1-219ENST00000620786 PAN2Q504Q3 1202 aaKnown RBP12.02□□□□□ -0.49
CLIP1-219ENST00000620786 CPA5Q8WXQ8 436 aa12.02□□□□□ -0.49
CLIP1-219ENST00000620786 HPS3Q969F9 1004 aa12.02□□□□□ -0.49
CLIP1-219ENST00000620786 COLEC11Q9BWP8 271 aa12.02□□□□□ -0.49
CLIP1-219ENST00000620786 FAM95CA0A1B0GW59 222 aa12.02□□□□□ -0.49
CLIP1-219ENST00000620786 RASA4BC9J798 803 aa12.02□□□□□ -0.49
CLIP1-219ENST00000620786 EEF2KO00418 725 aaKnown RBP12.02□□□□□ -0.49
CLIP1-219ENST00000620786 MAFGO15525 162 aa12.02□□□□□ -0.49
CLIP1-219ENST00000620786 RASA4O43374 803 aa12.02□□□□□ -0.49
CLIP1-219ENST00000620786 ESRRAP11474 423 aaPredicted RBP12.02□□□□□ -0.49
CLIP1-219ENST00000620786 EIF3EP60228 445 aaKnown RBP12.02□□□□□ -0.49
CLIP1-219ENST00000620786 SPARCL1Q14515 664 aa12.02□□□□□ -0.49
CLIP1-219ENST00000620786 GPR75-ASB3A0A0A6YYF3 556 aa12.01□□□□□ -0.49
CLIP1-219ENST00000620786 LIG3P49916 1009 aa12.01□□□□□ -0.49
CLIP1-219ENST00000620786 LCA5Q86VQ0 697 aa12.01□□□□□ -0.49
CLIP1-219ENST00000620786 WDR75Q8IWA0 830 aaKnown RBP12.01□□□□□ -0.49
CLIP1-219ENST00000620786 BPIFA3Q9BQP9 254 aa12.01□□□□□ -0.49
CLIP1-219ENST00000620786 FAM49BQ9NUQ9 324 aa12.01□□□□□ -0.49
CLIP1-219ENST00000620786 PRG3Q9Y2Y8 225 aaPredicted RBP12.01□□□□□ -0.49
CLIP1-219ENST00000620786 RIMBP3CA6NJZ7 1639 aa12.01□□□□□ -0.49
CLIP1-219ENST00000620786 RIMBP3BA6NNM3 1639 aa12.01□□□□□ -0.49
CLIP1-219ENST00000620786 RIMBP3Q9UFD9 1639 aa12.01□□□□□ -0.49
CLIP1-219ENST00000620786 ZNF197O14709 1029 aa12.01□□□□□ -0.49
CLIP1-219ENST00000620786 SKIP12755 728 aa12.01□□□□□ -0.49
CLIP1-219ENST00000620786 HDLBPQ00341 1268 aaKnown RBP12.01□□□□□ -0.49
CLIP1-219ENST00000620786 TAF11Q15544 211 aa12.01□□□□□ -0.49
CLIP1-219ENST00000620786 GOLGA7BQ2TAP0 167 aa12.01□□□□□ -0.49
CLIP1-219ENST00000620786 XRRA1Q6P2D8 792 aa12.01□□□□□ -0.49
CLIP1-219ENST00000620786 PDXDC1Q6P996 788 aa12.01□□□□□ -0.49
CLIP1-219ENST00000620786 SHC4Q6S5L8 630 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms