RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 RSPO2Q6UXX9 243 aaPredicted RBP10.56□□□□□ -0.72
VRK3-224ENST00000601849 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.56□□□□□ -0.72
VRK3-224ENST00000601849 ANKS3Q6ZW76 656 aa10.56□□□□□ -0.72
VRK3-224ENST00000601849 CATSPER3Q86XQ3 398 aa10.56□□□□□ -0.72
VRK3-224ENST00000601849 LNX1Q8TBB1 728 aaPredicted RBP10.56□□□□□ -0.72
VRK3-224ENST00000601849 FEZF2Q8TBJ5 459 aa10.56□□□□□ -0.72
VRK3-224ENST00000601849 HASPINQ8TF76 798 aa10.56□□□□□ -0.72
VRK3-224ENST00000601849 RUBCNQ92622 972 aa10.56□□□□□ -0.72
VRK3-224ENST00000601849 RABGGTAQ92696 567 aa10.56□□□□□ -0.72
VRK3-224ENST00000601849 SECISBP2LQ93073 1101 aaKnown RBP10.56□□□□□ -0.72
VRK3-224ENST00000601849 GTF3C6Q969F1 213 aa10.56□□□□□ -0.72
VRK3-224ENST00000601849 CLSTN3Q9BQT9 956 aa10.56□□□□□ -0.72
VRK3-224ENST00000601849 POLR3CQ9BUI4 534 aaPredicted RBP10.56□□□□□ -0.72
VRK3-224ENST00000601849 RAB34Q9BZG1 259 aa10.56□□□□□ -0.72
VRK3-224ENST00000601849 TOPORSQ9NS56 1045 aaPredicted RBP10.56□□□□□ -0.72
VRK3-224ENST00000601849 KCNG1Q9UIX4 513 aa10.56□□□□□ -0.72
VRK3-224ENST00000601849 KCNH3Q9ULD8 1083 aa10.56□□□□□ -0.72
VRK3-224ENST00000601849 CACNA1HO95180 2353 aa10.56□□□□□ -0.72
VRK3-224ENST00000601849 PHLPP2Q6ZVD8 1323 aa10.56□□□□□ -0.72
VRK3-224ENST00000601849 DENND4AQ7Z401 1863 aa10.55□□□□□ -0.72
VRK3-224ENST00000601849 KANSL1LA0AUZ9 987 aa10.55□□□□□ -0.72
VRK3-224ENST00000601849 K7ERI5 159 aa10.55□□□□□ -0.72
VRK3-224ENST00000601849 CCL16O15467 120 aa10.55□□□□□ -0.72
VRK3-224ENST00000601849 KIF4AO95239 1232 aa10.55□□□□□ -0.72
VRK3-224ENST00000601849 CTDNEP1O95476 244 aa10.55□□□□□ -0.72
VRK3-224ENST00000601849 NEFLP07196 543 aa10.55□□□□□ -0.72
VRK3-224ENST00000601849 CYP11B2P19099 503 aa10.55□□□□□ -0.72
VRK3-224ENST00000601849 OR1D2P34982 312 aa10.55□□□□□ -0.72
VRK3-224ENST00000601849 RBM25P49756 843 aaKnown RBP10.55□□□□□ -0.72
VRK3-224ENST00000601849 SNW1Q13573 536 aaKnown RBP10.55□□□□□ -0.72
VRK3-224ENST00000601849 RAB33AQ14088 237 aa10.55□□□□□ -0.72
VRK3-224ENST00000601849 PABPC1LQ4VXU2 614 aaKnown RBP10.55□□□□□ -0.72
VRK3-224ENST00000601849 SLC44A4Q53GD3 710 aa10.55□□□□□ -0.72
VRK3-224ENST00000601849 ZBTB41Q5SVQ8 909 aa10.55□□□□□ -0.72
VRK3-224ENST00000601849 PADI6Q6TGC4 694 aa10.55□□□□□ -0.72
VRK3-224ENST00000601849 NOSTRINQ8IVI9 506 aa10.55□□□□□ -0.72
VRK3-224ENST00000601849 GPR161Q8N6U8 529 aaKnown RBP10.55□□□□□ -0.72
VRK3-224ENST00000601849 NECAB1Q8N987 351 aa10.55□□□□□ -0.72
VRK3-224ENST00000601849 PJA1Q8NG27 643 aa10.55□□□□□ -0.72
VRK3-224ENST00000601849 SLC7A14Q8TBB6 771 aa10.55□□□□□ -0.72
VRK3-224ENST00000601849 ATRIPQ8WXE1 791 aa10.55□□□□□ -0.72
VRK3-224ENST00000601849 KIFAP3Q92845 792 aa10.55□□□□□ -0.72
VRK3-224ENST00000601849 FGF13Q92913 245 aa10.55□□□□□ -0.72
VRK3-224ENST00000601849 TNFRSF25Q93038 417 aa10.55□□□□□ -0.72
VRK3-224ENST00000601849 CCDC94Q9BW85 323 aaPredicted RBP10.55□□□□□ -0.72
VRK3-224ENST00000601849 OSBPL6Q9BZF3 934 aa10.55□□□□□ -0.72
VRK3-224ENST00000601849 PDZD7Q9H5P4 517 aa10.55□□□□□ -0.72
VRK3-224ENST00000601849 GPRC5CQ9NQ84 441 aa10.55□□□□□ -0.72
VRK3-224ENST00000601849 SPATA6Q9NWH7 488 aaPredicted RBP10.55□□□□□ -0.72
VRK3-224ENST00000601849 MRPS17Q9Y2R5 130 aaKnown RBP10.55□□□□□ -0.72
VRK3-224ENST00000601849 GDAQ9Y2T3 454 aa10.55□□□□□ -0.72
VRK3-224ENST00000601849 MRPS23Q9Y3D9 190 aaKnown RBP10.55□□□□□ -0.72
VRK3-224ENST00000601849 R4GN57 208 aa10.55□□□□□ -0.72
VRK3-224ENST00000601849 PTPRZ1P23471 2315 aaPredicted RBP10.55□□□□□ -0.72
VRK3-224ENST00000601849 TDRD15B5MCY1 1934 aaKnown RBP10.54□□□□□ -0.72
VRK3-224ENST00000601849 WDR87Q6ZQQ6 2873 aa10.54□□□□□ -0.72
VRK3-224ENST00000601849 A0A087WWV3 80 aa10.54□□□□□ -0.72
VRK3-224ENST00000601849 FAM205CA6NFA0 338 aa10.54□□□□□ -0.72
VRK3-224ENST00000601849 POTEMA6NI47 508 aa10.54□□□□□ -0.72
VRK3-224ENST00000601849 FAM170BA6NMN3 283 aa10.54□□□□□ -0.72
VRK3-224ENST00000601849 ZNF197O14709 1029 aa10.54□□□□□ -0.72
VRK3-224ENST00000601849 RECQL4O94761 1208 aa10.54□□□□□ -0.72
VRK3-224ENST00000601849 LRG1P02750 347 aa10.54□□□□□ -0.72
VRK3-224ENST00000601849 POU2F2P09086 479 aa10.54□□□□□ -0.72
VRK3-224ENST00000601849 SP9P0CG40 484 aa10.54□□□□□ -0.72
VRK3-224ENST00000601849 SPATA31C1P0DKV0 1188 aa10.54□□□□□ -0.72
VRK3-224ENST00000601849 FDPSP14324 419 aaKnown RBP10.54□□□□□ -0.72
VRK3-224ENST00000601849 PTPN2P17706 415 aa10.54□□□□□ -0.72
VRK3-224ENST00000601849 PLXNA3P51805 1871 aa10.54□□□□□ -0.72
VRK3-224ENST00000601849 NEK4P51957 841 aa10.54□□□□□ -0.72
VRK3-224ENST00000601849 PPP2R5DQ14738 602 aa10.54□□□□□ -0.72
VRK3-224ENST00000601849 UBXN2BQ14CS0 331 aa10.54□□□□□ -0.72
VRK3-224ENST00000601849 MLF2Q15773 248 aaPredicted RBP10.54□□□□□ -0.72
VRK3-224ENST00000601849 ME3Q16798 604 aa10.54□□□□□ -0.72
VRK3-224ENST00000601849 ZNF528Q3MIS6 628 aa10.54□□□□□ -0.72
VRK3-224ENST00000601849 PARM1Q6UWI2 310 aa10.54□□□□□ -0.72
VRK3-224ENST00000601849 ELMOD1Q8N336 334 aa10.54□□□□□ -0.72
VRK3-224ENST00000601849 FGF14Q92915 247 aa10.54□□□□□ -0.72
VRK3-224ENST00000601849 DDX27Q96GQ7 796 aaKnown RBP10.54□□□□□ -0.72
VRK3-224ENST00000601849 PAAF1Q9BRP4 392 aa10.54□□□□□ -0.72
VRK3-224ENST00000601849 TCHPQ9BT92 498 aa10.54□□□□□ -0.72
VRK3-224ENST00000601849 SLC38A7Q9NVC3 462 aa10.54□□□□□ -0.72
VRK3-224ENST00000601849 GDE1Q9NZC3 331 aa10.54□□□□□ -0.72
VRK3-224ENST00000601849 FBXO4Q9UKT5 387 aa10.54□□□□□ -0.72
VRK3-224ENST00000601849 NOL7Q9UMY1 257 aaKnown RBP10.54□□□□□ -0.72
VRK3-224ENST00000601849 BACE2Q9Y5Z0 518 aa10.54□□□□□ -0.72
VRK3-224ENST00000601849 CCDC169A6NNP5 214 aa10.53□□□□□ -0.72
VRK3-224ENST00000601849 H7C4K7 107 aa10.53□□□□□ -0.72
VRK3-224ENST00000601849 TMEM189-UBE2V1I3L0A0 370 aa10.53□□□□□ -0.72
VRK3-224ENST00000601849 PRRG1O14668 218 aa10.53□□□□□ -0.72
VRK3-224ENST00000601849 PTGESO14684 152 aa10.53□□□□□ -0.72
VRK3-224ENST00000601849 MED24O75448 989 aa10.53□□□□□ -0.72
VRK3-224ENST00000601849 OR52Z1P0C646 297 aa10.53□□□□□ -0.72
VRK3-224ENST00000601849 FGFR3P22607 806 aa10.53□□□□□ -0.72
VRK3-224ENST00000601849 PUM1Q14671 1186 aaKnown RBP eCLIP10.53□□□□□ -0.72
VRK3-224ENST00000601849 ATF7IP2Q5U623 682 aa10.53□□□□□ -0.72
VRK3-224ENST00000601849 ZNF852Q6ZMS4 543 aa10.53□□□□□ -0.72
VRK3-224ENST00000601849 DGLUCYQ7Z3D6 616 aa10.53□□□□□ -0.72
VRK3-224ENST00000601849 KIAA2013Q8IYS2 634 aa10.53□□□□□ -0.72
VRK3-224ENST00000601849 FAM184AQ8NB25 1140 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms