RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 TUSC3Q13454 348 aa6.78□□□□□ -1.32
VRK3-220ENST00000600259 MLF2Q15773 248 aaPredicted RBP6.78□□□□□ -1.32
VRK3-220ENST00000600259 FAM187BQ17R55 369 aa6.78□□□□□ -1.32
VRK3-220ENST00000600259 RSPO4Q2I0M5 234 aaPredicted RBP6.78□□□□□ -1.32
VRK3-220ENST00000600259 UVSSAQ2YD98 709 aa6.78□□□□□ -1.32
VRK3-220ENST00000600259 VARS2Q5ST30 1063 aaKnown RBP6.78□□□□□ -1.32
VRK3-220ENST00000600259 FAM171A1Q5VUB5 890 aa6.78□□□□□ -1.32
VRK3-220ENST00000600259 NCAPH2Q6IBW4 605 aa6.78□□□□□ -1.32
VRK3-220ENST00000600259 SLC27A1Q6PCB7 646 aa6.78□□□□□ -1.32
VRK3-220ENST00000600259 ZC3H14Q6PJT7 736 aaKnown RBP6.78□□□□□ -1.32
VRK3-220ENST00000600259 PIK3AP1Q6ZUJ8 805 aa6.78□□□□□ -1.32
VRK3-220ENST00000600259 PIGOQ8TEQ8 1089 aa6.78□□□□□ -1.32
VRK3-220ENST00000600259 MTMR9Q96QG7 549 aa6.78□□□□□ -1.32
VRK3-220ENST00000600259 TTPALQ9BTX7 342 aa6.78□□□□□ -1.32
VRK3-220ENST00000600259 LTB4R2Q9NPC1 389 aa6.78□□□□□ -1.32
VRK3-220ENST00000600259 GPRC5CQ9NQ84 441 aa6.78□□□□□ -1.32
VRK3-220ENST00000600259 HCFC1R1Q9NWW0 138 aa6.78□□□□□ -1.32
VRK3-220ENST00000600259 PARP2Q9UGN5 583 aa6.78□□□□□ -1.32
VRK3-220ENST00000600259 USP20Q9Y2K6 914 aa6.78□□□□□ -1.32
VRK3-220ENST00000600259 CHD8Q9HCK8 2581 aa6.78□□□□□ -1.32
VRK3-220ENST00000600259 MTCL1Q9Y4B5 1905 aaKnown RBP6.78□□□□□ -1.32
VRK3-220ENST00000600259 NOTCH4Q99466 2003 aa6.77□□□□□ -1.32
VRK3-220ENST00000600259 SF3B1O75533 1304 aaKnown RBP eCLIP6.77□□□□□ -1.32
VRK3-220ENST00000600259 CASTOR2A6NHX0 329 aa6.77□□□□□ -1.33
VRK3-220ENST00000600259 CPLX1O14810 134 aa6.77□□□□□ -1.33
VRK3-220ENST00000600259 TBC1D4O60343 1298 aa6.77□□□□□ -1.33
VRK3-220ENST00000600259 PFKFB2O60825 505 aa6.77□□□□□ -1.33
VRK3-220ENST00000600259 C8AP07357 584 aa6.77□□□□□ -1.33
VRK3-220ENST00000600259 TDGF1P13385 188 aa6.77□□□□□ -1.33
VRK3-220ENST00000600259 TARSP26639 723 aaKnown RBP6.77□□□□□ -1.33
VRK3-220ENST00000600259 OR1D2P34982 312 aa6.77□□□□□ -1.33
VRK3-220ENST00000600259 RPS9P46781 194 aaKnown RBP6.77□□□□□ -1.33
VRK3-220ENST00000600259 ATXN1P54253 815 aaKnown RBP6.77□□□□□ -1.33
VRK3-220ENST00000600259 CREMQ03060 361 aa6.77□□□□□ -1.33
VRK3-220ENST00000600259 NCBP1Q09161 790 aaKnown RBP6.77□□□□□ -1.33
VRK3-220ENST00000600259 STK3Q13188 491 aa6.77□□□□□ -1.33
VRK3-220ENST00000600259 TFDP1Q14186 410 aa6.77□□□□□ -1.33
VRK3-220ENST00000600259 PSMD5Q16401 504 aa6.77□□□□□ -1.33
VRK3-220ENST00000600259 SLC5A9Q2M3M2 681 aa6.77□□□□□ -1.33
VRK3-220ENST00000600259 PPM1LQ5SGD2 360 aa6.77□□□□□ -1.33
VRK3-220ENST00000600259 AXDND1Q5T1B0 1012 aaPredicted RBP6.77□□□□□ -1.33
VRK3-220ENST00000600259 EEF1DP3Q658K8 133 aa6.77□□□□□ -1.33
VRK3-220ENST00000600259 CDCA2Q69YH5 1023 aaPredicted RBP6.77□□□□□ -1.33
VRK3-220ENST00000600259 TANGO2Q6ICL3 276 aa6.77□□□□□ -1.33
VRK3-220ENST00000600259 MAMSTRQ6ZN01 415 aa6.77□□□□□ -1.33
VRK3-220ENST00000600259 RTL10Q7L3V2 364 aa6.77□□□□□ -1.33
VRK3-220ENST00000600259 NPAS3Q8IXF0 933 aa6.77□□□□□ -1.33
VRK3-220ENST00000600259 SLFN12Q8IYM2 578 aa6.77□□□□□ -1.33
VRK3-220ENST00000600259 HASPINQ8TF76 798 aa6.77□□□□□ -1.33
VRK3-220ENST00000600259 BSNDQ8WZ55 320 aa6.77□□□□□ -1.33
VRK3-220ENST00000600259 PRIMPOLQ96LW4 560 aa6.77□□□□□ -1.33
VRK3-220ENST00000600259 NELL2Q99435 816 aa6.77□□□□□ -1.33
VRK3-220ENST00000600259 NAP1L4Q99733 375 aaKnown RBP6.77□□□□□ -1.33
VRK3-220ENST00000600259 CCDC113Q9H0I3 377 aa6.77□□□□□ -1.33
VRK3-220ENST00000600259 POLR3FQ9H1D9 316 aaPredicted RBP6.77□□□□□ -1.33
VRK3-220ENST00000600259 PDZD7Q9H5P4 517 aa6.77□□□□□ -1.33
VRK3-220ENST00000600259 AVENQ9NQS1 362 aaPredicted RBP6.77□□□□□ -1.33
VRK3-220ENST00000600259 SNTG2Q9NY99 539 aa6.77□□□□□ -1.33
VRK3-220ENST00000600259 MTRRQ9UBK8 725 aa6.77□□□□□ -1.33
VRK3-220ENST00000600259 KCNH3Q9ULD8 1083 aa6.77□□□□□ -1.33
VRK3-220ENST00000600259 TPCN1Q9ULQ1 816 aa6.77□□□□□ -1.33
VRK3-220ENST00000600259 PCDHA12Q9UN75 941 aa6.77□□□□□ -1.33
VRK3-220ENST00000600259 CYP46A1Q9Y6A2 500 aa6.77□□□□□ -1.33
VRK3-220ENST00000600259 CHD6Q8TD26 2715 aa6.77□□□□□ -1.33
VRK3-220ENST00000600259 STK36Q9NRP7 1315 aa6.76□□□□□ -1.33
VRK3-220ENST00000600259 TMEM189-UBE2V1I3L0A0 370 aa6.76□□□□□ -1.33
VRK3-220ENST00000600259 ACKR2O00590 384 aa6.76□□□□□ -1.33
VRK3-220ENST00000600259 SPTLC1O15269 473 aa6.76□□□□□ -1.33
VRK3-220ENST00000600259 LAMTOR5O43504 91 aa6.76□□□□□ -1.33
VRK3-220ENST00000600259 KINO60870 393 aaKnown RBP6.76□□□□□ -1.33
VRK3-220ENST00000600259 MOSPD3O75425 235 aa6.76□□□□□ -1.33
VRK3-220ENST00000600259 ECI2O75521 394 aa6.76□□□□□ -1.33
VRK3-220ENST00000600259 KRT37O76014 449 aa6.76□□□□□ -1.33
VRK3-220ENST00000600259 RECQL4O94761 1208 aa6.76□□□□□ -1.33
VRK3-220ENST00000600259 ABLIM3O94929 683 aa6.76□□□□□ -1.33
VRK3-220ENST00000600259 REC8O95072 547 aa6.76□□□□□ -1.33
VRK3-220ENST00000600259 BAG4O95429 457 aaKnown RBP6.76□□□□□ -1.33
VRK3-220ENST00000600259 THP07101 528 aa6.76□□□□□ -1.33
VRK3-220ENST00000600259 RFX1P22670 979 aa6.76□□□□□ -1.33
VRK3-220ENST00000600259 FCARP24071 287 aa6.76□□□□□ -1.33
VRK3-220ENST00000600259 MAGEA9P43362 315 aa6.76□□□□□ -1.33
VRK3-220ENST00000600259 RBM25P49756 843 aaKnown RBP6.76□□□□□ -1.33
VRK3-220ENST00000600259 CSTF1Q05048 431 aaKnown RBP6.76□□□□□ -1.33
VRK3-220ENST00000600259 MRPL58Q14197 206 aaKnown RBP6.76□□□□□ -1.33
VRK3-220ENST00000600259 UBXN2BQ14CS0 331 aa6.76□□□□□ -1.33
VRK3-220ENST00000600259 XKR4Q5GH76 650 aa6.76□□□□□ -1.33
VRK3-220ENST00000600259 PRSS36Q5K4E3 855 aa6.76□□□□□ -1.33
VRK3-220ENST00000600259 ZBTB41Q5SVQ8 909 aa6.76□□□□□ -1.33
VRK3-220ENST00000600259 NT5DC1Q5TFE4 455 aa6.76□□□□□ -1.33
VRK3-220ENST00000600259 CPLX2Q6PUV4 134 aaKnown RBP6.76□□□□□ -1.33
VRK3-220ENST00000600259 TSSK4Q6SA08 328 aa6.76□□□□□ -1.33
VRK3-220ENST00000600259 ALKAL1Q6UXT8 129 aa6.76□□□□□ -1.33
VRK3-220ENST00000600259 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.76□□□□□ -1.33
VRK3-220ENST00000600259 MTSS1LQ765P7 747 aa6.76□□□□□ -1.33
VRK3-220ENST00000600259 CATSPER3Q86XQ3 398 aa6.76□□□□□ -1.33
VRK3-220ENST00000600259 CEP57Q86XR8 500 aa6.76□□□□□ -1.33
VRK3-220ENST00000600259 NOSTRINQ8IVI9 506 aa6.76□□□□□ -1.33
VRK3-220ENST00000600259 HACE1Q8IYU2 909 aa6.76□□□□□ -1.33
VRK3-220ENST00000600259 C3orf58Q8NDZ4 430 aa6.76□□□□□ -1.33
VRK3-220ENST00000600259 SLC7A14Q8TBB6 771 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms