RNA–Protein interactions for RNA: ENST00000600031.1

VRK3-218, Transcript of vaccinia related kinase 3, humanhuman

Gene VRK3, Length 2,110 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-218ENST00000600031 CCDC66A2RUB6 948 aa16.42■□□□□ 0.22
VRK3-218ENST00000600031 ARF4P18085 180 aaPredicted RBP16.42■□□□□ 0.22
VRK3-218ENST00000600031 CDC42EP1Q00587 391 aa16.42■□□□□ 0.22
VRK3-218ENST00000600031 PSMD6Q15008 389 aa16.42■□□□□ 0.22
VRK3-218ENST00000600031 ZNF568Q3ZCX4 644 aa16.42■□□□□ 0.22
VRK3-218ENST00000600031 RNF180Q86T96 592 aa16.42■□□□□ 0.22
VRK3-218ENST00000600031 PCSK9Q8NBP7 692 aaKnown RBP16.42■□□□□ 0.22
VRK3-218ENST00000600031 LMO3Q8TAP4 145 aa16.42■□□□□ 0.22
VRK3-218ENST00000600031 SH3TC2Q8TF17 1288 aa16.42■□□□□ 0.22
VRK3-218ENST00000600031 FAM84AQ96KN4 292 aa16.42■□□□□ 0.22
VRK3-218ENST00000600031 PARD6BQ9BYG5 372 aa16.42■□□□□ 0.22
VRK3-218ENST00000600031 PDE11AQ9HCR9 933 aa16.42■□□□□ 0.22
VRK3-218ENST00000600031 MYO1AQ9UBC5 1043 aa16.42■□□□□ 0.22
VRK3-218ENST00000600031 LRRC53A6NM62 1247 aa16.42■□□□□ 0.22
VRK3-218ENST00000600031 OGTO15294 1046 aa16.42■□□□□ 0.22
VRK3-218ENST00000600031 TSPAN1O60635 241 aa16.42■□□□□ 0.22
VRK3-218ENST00000600031 LRRN2O75325 713 aa16.42■□□□□ 0.22
VRK3-218ENST00000600031 UCHL3P15374 230 aa16.42■□□□□ 0.22
VRK3-218ENST00000600031 MXI1P50539 228 aa16.42■□□□□ 0.22
VRK3-218ENST00000600031 ENPEPQ07075 957 aa16.42■□□□□ 0.22
VRK3-218ENST00000600031 BRD3Q15059 726 aa16.42■□□□□ 0.22
VRK3-218ENST00000600031 FAM47CQ5HY64 1035 aa16.42■□□□□ 0.22
VRK3-218ENST00000600031 GJB7Q6PEY0 223 aa16.42■□□□□ 0.22
VRK3-218ENST00000600031 CYP26C1Q6V0L0 522 aa16.42■□□□□ 0.22
VRK3-218ENST00000600031 ZNF516Q92618 1163 aa16.42■□□□□ 0.22
VRK3-218ENST00000600031 GCOM2Q9BZD3 368 aaPredicted RBP16.42■□□□□ 0.22
VRK3-218ENST00000600031 UBXN6Q9BZV1 441 aa16.42■□□□□ 0.22
VRK3-218ENST00000600031 INTS2Q9H0H0 1204 aaKnown RBP16.42■□□□□ 0.22
VRK3-218ENST00000600031 CDT1Q9H211 546 aa16.42■□□□□ 0.22
VRK3-218ENST00000600031 PDZD7Q9H5P4 517 aa16.42■□□□□ 0.22
VRK3-218ENST00000600031 ST7Q9NRC1 585 aa16.42■□□□□ 0.22
VRK3-218ENST00000600031 WBP1LQ9NX94 342 aa16.42■□□□□ 0.22
VRK3-218ENST00000600031 AJAP1Q9UKB5 411 aaPredicted RBP16.42■□□□□ 0.22
VRK3-218ENST00000600031 CCDC151A5D8V7 595 aa16.41■□□□□ 0.22
VRK3-218ENST00000600031 PMM2O15305 246 aa16.41■□□□□ 0.22
VRK3-218ENST00000600031 P4HA2O15460 535 aa16.41■□□□□ 0.22
VRK3-218ENST00000600031 N4BP1O75113 896 aaKnown RBP16.41■□□□□ 0.22
VRK3-218ENST00000600031 MEA1Q16626 185 aa16.41■□□□□ 0.22
VRK3-218ENST00000600031 TSR1Q2NL82 804 aaKnown RBP16.41■□□□□ 0.22
VRK3-218ENST00000600031 EPC2Q52LR7 807 aa16.41■□□□□ 0.22
VRK3-218ENST00000600031 PDXDC1Q6P996 788 aa16.41■□□□□ 0.22
VRK3-218ENST00000600031 GPIHBP1Q8IV16 184 aa16.41■□□□□ 0.22
VRK3-218ENST00000600031 CEP120Q8N960 986 aa16.41■□□□□ 0.22
VRK3-218ENST00000600031 EHBP1Q8NDI1 1231 aa16.41■□□□□ 0.22
VRK3-218ENST00000600031 TMEM8AQ9HCN3 771 aa16.41■□□□□ 0.22
VRK3-218ENST00000600031 PLAGL2Q9UPG8 496 aa16.41■□□□□ 0.22
VRK3-218ENST00000600031 CTAGE9A4FU28 777 aa16.4■□□□□ 0.22
VRK3-218ENST00000600031 SEC31AO94979 1220 aaKnown RBP16.4■□□□□ 0.22
VRK3-218ENST00000600031 DARSP14868 501 aaKnown RBP16.4■□□□□ 0.22
VRK3-218ENST00000600031 ACLYP53396 1101 aa16.4■□□□□ 0.22
VRK3-218ENST00000600031 CLDN10P78369 228 aa16.4■□□□□ 0.22
VRK3-218ENST00000600031 ZNF569Q5MCW4 686 aa16.4■□□□□ 0.22
VRK3-218ENST00000600031 LMBRD2Q68DH5 695 aaPredicted RBP16.4■□□□□ 0.22
VRK3-218ENST00000600031 SV2AQ7L0J3 742 aa16.4■□□□□ 0.22
VRK3-218ENST00000600031 USP37Q86T82 979 aa16.4■□□□□ 0.22
VRK3-218ENST00000600031 THNSL1Q8IYQ7 743 aa16.4■□□□□ 0.22
VRK3-218ENST00000600031 NME8Q8N427 588 aa16.4■□□□□ 0.22
VRK3-218ENST00000600031 TMEM40Q8WWA1 233 aa16.4■□□□□ 0.22
VRK3-218ENST00000600031 IRX2Q9BZI1 471 aaPredicted RBP16.4■□□□□ 0.22
VRK3-218ENST00000600031 CPSF3Q9UKF6 684 aaKnown RBP16.4■□□□□ 0.22
VRK3-218ENST00000600031 PTPRJQ12913 1337 aa16.4■□□□□ 0.22
VRK3-218ENST00000600031 ERLIN2O94905 339 aa16.4■□□□□ 0.22
VRK3-218ENST00000600031 HNRNPH3P31942 346 aaKnown RBP16.4■□□□□ 0.22
VRK3-218ENST00000600031 GTF2H1P32780 548 aa16.4■□□□□ 0.22
VRK3-218ENST00000600031 KRT39Q6A163 491 aa16.4■□□□□ 0.22
VRK3-218ENST00000600031 TAF2Q6P1X5 1199 aa16.4■□□□□ 0.22
VRK3-218ENST00000600031 SESTD1Q86VW0 696 aa16.4■□□□□ 0.22
VRK3-218ENST00000600031 BRSK2Q8IWQ3 736 aa16.4■□□□□ 0.22
VRK3-218ENST00000600031 WNT8BQ93098 351 aa16.4■□□□□ 0.22
VRK3-218ENST00000600031 FNBP1Q96RU3 617 aa16.4■□□□□ 0.22
VRK3-218ENST00000600031 EPC1Q9H2F5 836 aa16.4■□□□□ 0.22
VRK3-218ENST00000600031 EIF4BP23588 611 aaKnown RBP16.39■□□□□ 0.21
VRK3-218ENST00000600031 OSTNP61366 133 aa16.39■□□□□ 0.21
VRK3-218ENST00000600031 CETN1Q12798 172 aa16.39■□□□□ 0.21
VRK3-218ENST00000600031 IQCEQ6IPM2 695 aa16.39■□□□□ 0.21
VRK3-218ENST00000600031 TMEM192Q8IY95 271 aa16.39■□□□□ 0.21
VRK3-218ENST00000600031 SEMA4DQ92854 862 aa16.39■□□□□ 0.21
VRK3-218ENST00000600031 ZNHIT6Q9NWK9 470 aaKnown RBP16.39■□□□□ 0.21
VRK3-218ENST00000600031 FBXL5Q9UKA1 691 aa16.39■□□□□ 0.21
VRK3-218ENST00000600031 PTPN22Q9Y2R2 807 aa16.39■□□□□ 0.21
VRK3-218ENST00000600031 A0A1B0GUA9 196 aa16.39■□□□□ 0.21
VRK3-218ENST00000600031 TNNI1P19237 187 aa16.39■□□□□ 0.21
VRK3-218ENST00000600031 HOXA11P31270 313 aaPredicted RBP16.39■□□□□ 0.21
VRK3-218ENST00000600031 C1QTNF8P60827 252 aa16.39■□□□□ 0.21
VRK3-218ENST00000600031 SNX17Q15036 470 aa16.39■□□□□ 0.21
VRK3-218ENST00000600031 PHLDB3Q6NSJ2 640 aa16.39■□□□□ 0.21
VRK3-218ENST00000600031 C15orf39Q6ZRI6 1047 aa16.39■□□□□ 0.21
VRK3-218ENST00000600031 TAS1R2Q8TE23 839 aa16.39■□□□□ 0.21
VRK3-218ENST00000600031 HNRNPLLQ8WVV9 542 aaKnown RBP16.39■□□□□ 0.21
VRK3-218ENST00000600031 VTI1AQ96AJ9 217 aa16.39■□□□□ 0.21
VRK3-218ENST00000600031 COQ4Q9Y3A0 265 aa16.39■□□□□ 0.21
VRK3-218ENST00000600031 C4BPAP04003 597 aaKnown RBP16.38■□□□□ 0.21
VRK3-218ENST00000600031 MCF2P10911 925 aa16.38■□□□□ 0.21
VRK3-218ENST00000600031 CRYBB1P53674 252 aaPredicted RBP16.38■□□□□ 0.21
VRK3-218ENST00000600031 ITGA7Q13683 1181 aa16.38■□□□□ 0.21
VRK3-218ENST00000600031 ENOX2Q16206 610 aaKnown RBP16.38■□□□□ 0.21
VRK3-218ENST00000600031 CATSPER4Q7RTX7 472 aa16.38■□□□□ 0.21
VRK3-218ENST00000600031 SERINC5Q86VE9 423 aa16.38■□□□□ 0.21
VRK3-218ENST00000600031 CGRRF1Q99675 332 aa16.38■□□□□ 0.21
VRK3-218ENST00000600031 NAPGQ99747 312 aaPredicted RBP16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms