RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 PPP1R3GB7ZBB8 358 aa13.19□□□□□ -0.3
SHKBP1-213ENST00000597325 PRPF6O94906 941 aaKnown RBP13.19□□□□□ -0.3
SHKBP1-213ENST00000597325 CD44P16070 742 aaKnown RBP13.19□□□□□ -0.3
SHKBP1-213ENST00000597325 DNAJB1P25685 340 aa13.19□□□□□ -0.3
SHKBP1-213ENST00000597325 ERCC5P28715 1186 aaPredicted RBP13.19□□□□□ -0.3
SHKBP1-213ENST00000597325 GPC3P51654 580 aa13.19□□□□□ -0.3
SHKBP1-213ENST00000597325 NLRP11P59045 1033 aaKnown RBP13.19□□□□□ -0.3
SHKBP1-213ENST00000597325 KNOP1Q1ED39 458 aaKnown RBP13.19□□□□□ -0.3
SHKBP1-213ENST00000597325 BMT2Q1RMZ1 405 aa13.19□□□□□ -0.3
SHKBP1-213ENST00000597325 ZC2HC1CQ53FD0 456 aaPredicted RBP13.19□□□□□ -0.3
SHKBP1-213ENST00000597325 CDCA2Q69YH5 1023 aaPredicted RBP13.19□□□□□ -0.3
SHKBP1-213ENST00000597325 EPM2AIP1Q7L775 607 aaPredicted RBP13.19□□□□□ -0.3
SHKBP1-213ENST00000597325 KSR1Q8IVT5 923 aa13.19□□□□□ -0.3
SHKBP1-213ENST00000597325 KREMEN2Q8NCW0 462 aa13.19□□□□□ -0.3
SHKBP1-213ENST00000597325 TMEM161BQ8NDZ6 487 aa13.19□□□□□ -0.3
SHKBP1-213ENST00000597325 GLIS3Q8NEA6 775 aa13.19□□□□□ -0.3
SHKBP1-213ENST00000597325 FAM200AQ8TCP9 573 aa13.19□□□□□ -0.3
SHKBP1-213ENST00000597325 SCFD1Q8WVM8 642 aa13.19□□□□□ -0.3
SHKBP1-213ENST00000597325 BICD1Q96G01 975 aa13.19□□□□□ -0.3
SHKBP1-213ENST00000597325 FIZ1Q96SL8 496 aa13.19□□□□□ -0.3
SHKBP1-213ENST00000597325 NTPCRQ9BSD7 190 aaKnown RBP13.19□□□□□ -0.3
SHKBP1-213ENST00000597325 TMEM206Q9H813 350 aa13.19□□□□□ -0.3
SHKBP1-213ENST00000597325 ARHGAP28Q9P2N2 729 aa13.19□□□□□ -0.3
SHKBP1-213ENST00000597325 PLAGL2Q9UPG8 496 aa13.19□□□□□ -0.3
SHKBP1-213ENST00000597325 RWDD3Q9Y3V2 267 aa13.19□□□□□ -0.3
SHKBP1-213ENST00000597325 ADGRA3Q8IWK6 1321 aa13.18□□□□□ -0.3
SHKBP1-213ENST00000597325 BECN2A8MW95 431 aa13.18□□□□□ -0.3
SHKBP1-213ENST00000597325 K7ERI5 159 aa13.18□□□□□ -0.3
SHKBP1-213ENST00000597325 PPP1R37O75864 691 aa13.18□□□□□ -0.3
SHKBP1-213ENST00000597325 CSPG5O95196 566 aa13.18□□□□□ -0.3
SHKBP1-213ENST00000597325 THPOP40225 353 aa13.18□□□□□ -0.3
SHKBP1-213ENST00000597325 TPM4P67936 248 aa13.18□□□□□ -0.3
SHKBP1-213ENST00000597325 MRPS6P82932 125 aaKnown RBP13.18□□□□□ -0.3
SHKBP1-213ENST00000597325 GTF2BQ00403 316 aa13.18□□□□□ -0.3
SHKBP1-213ENST00000597325 POU5F1BQ06416 359 aa13.18□□□□□ -0.3
SHKBP1-213ENST00000597325 TMEM62Q0P6H9 643 aa13.18□□□□□ -0.3
SHKBP1-213ENST00000597325 ACAP1Q15027 740 aa13.18□□□□□ -0.3
SHKBP1-213ENST00000597325 ANGPT1Q15389 498 aa13.18□□□□□ -0.3
SHKBP1-213ENST00000597325 TPD52L1Q16890 204 aaPredicted RBP13.18□□□□□ -0.3
SHKBP1-213ENST00000597325 RSPO4Q2I0M5 234 aaPredicted RBP13.18□□□□□ -0.3
SHKBP1-213ENST00000597325 KIZQ2M2Z5 673 aa13.18□□□□□ -0.3
SHKBP1-213ENST00000597325 CWF19L1Q69YN2 538 aaKnown RBP13.18□□□□□ -0.3
SHKBP1-213ENST00000597325 HS2ST1Q7LGA3 356 aa13.18□□□□□ -0.3
SHKBP1-213ENST00000597325 ZNF507Q8TCN5 953 aa13.18□□□□□ -0.3
SHKBP1-213ENST00000597325 P2RX5Q93086 422 aa13.18□□□□□ -0.3
SHKBP1-213ENST00000597325 ZNF668Q96K58 619 aaPredicted RBP13.18□□□□□ -0.3
SHKBP1-213ENST00000597325 BPIFA3Q9BQP9 254 aa13.18□□□□□ -0.3
SHKBP1-213ENST00000597325 NFKBIZQ9BYH8 718 aa13.18□□□□□ -0.3
SHKBP1-213ENST00000597325 IFIH1Q9BYX4 1025 aaKnown RBP13.18□□□□□ -0.3
SHKBP1-213ENST00000597325 GCOM2Q9BZD3 368 aaPredicted RBP13.18□□□□□ -0.3
SHKBP1-213ENST00000597325 OSBPL7Q9BZF2 842 aa13.18□□□□□ -0.3
SHKBP1-213ENST00000597325 TMEM134Q9H6X4 195 aa13.18□□□□□ -0.3
SHKBP1-213ENST00000597325 RWDD2AQ9UIY3 292 aa13.18□□□□□ -0.3
SHKBP1-213ENST00000597325 TBX20Q9UMR3 447 aa13.18□□□□□ -0.3
SHKBP1-213ENST00000597325 SORCS3Q9UPU3 1222 aa13.18□□□□□ -0.3
SHKBP1-213ENST00000597325 GINS2Q9Y248 185 aa13.18□□□□□ -0.3
SHKBP1-213ENST00000597325 A0A087WZ62 844 aa13.17□□□□□ -0.3
SHKBP1-213ENST00000597325 SMTNL1A8MU46 457 aa13.17□□□□□ -0.3
SHKBP1-213ENST00000597325 GOLGA6L19H0YKK7 550 aa13.17□□□□□ -0.3
SHKBP1-213ENST00000597325 INO80B-WBP1J3KQ70 363 aa13.17□□□□□ -0.3
SHKBP1-213ENST00000597325 CALUO43852 315 aaPredicted RBP13.17□□□□□ -0.3
SHKBP1-213ENST00000597325 CAND2O75155 1236 aa13.17□□□□□ -0.3
SHKBP1-213ENST00000597325 PRKCBP05771 671 aa13.17□□□□□ -0.3
SHKBP1-213ENST00000597325 CCNE1P24864 410 aa13.17□□□□□ -0.3
SHKBP1-213ENST00000597325 PTENP60484 403 aa13.17□□□□□ -0.3
SHKBP1-213ENST00000597325 MYL5Q02045 173 aa13.17□□□□□ -0.3
SHKBP1-213ENST00000597325 LRRC63Q05C16 580 aa13.17□□□□□ -0.3
SHKBP1-213ENST00000597325 MTMR3Q13615 1198 aa13.17□□□□□ -0.3
SHKBP1-213ENST00000597325 MAPK6Q16659 721 aa13.17□□□□□ -0.3
SHKBP1-213ENST00000597325 TMEM132AQ24JP5 1023 aa13.17□□□□□ -0.3
SHKBP1-213ENST00000597325 PPP4R3CPQ6ZMV5 832 aa13.17□□□□□ -0.3
SHKBP1-213ENST00000597325 ZBTB33Q86T24 672 aa13.17□□□□□ -0.3
SHKBP1-213ENST00000597325 MAP4K3Q8IVH8 894 aa13.17□□□□□ -0.3
SHKBP1-213ENST00000597325 AOPEPQ8N6M6 819 aa13.17□□□□□ -0.3
SHKBP1-213ENST00000597325 GOLGA5Q8TBA6 731 aa13.17□□□□□ -0.3
SHKBP1-213ENST00000597325 PPP2R3CQ969Q6 453 aa13.17□□□□□ -0.3
SHKBP1-213ENST00000597325 FDXACB1Q9BRP7 624 aaPredicted RBP13.17□□□□□ -0.3
SHKBP1-213ENST00000597325 PLVAPQ9BX97 442 aa13.17□□□□□ -0.3
SHKBP1-213ENST00000597325 INO80BQ9C086 356 aaPredicted RBP13.17□□□□□ -0.3
SHKBP1-213ENST00000597325 SMOC2Q9H3U7 446 aa13.17□□□□□ -0.3
SHKBP1-213ENST00000597325 TYW1Q9NV66 732 aaKnown RBP13.17□□□□□ -0.3
SHKBP1-213ENST00000597325 TRPV2Q9Y5S1 764 aa13.17□□□□□ -0.3
SHKBP1-213ENST00000597325 GPR179Q6PRD1 2367 aa13.16□□□□□ -0.3
SHKBP1-213ENST00000597325 HNRNPDLO14979 420 aaKnown RBP13.16□□□□□ -0.3
SHKBP1-213ENST00000597325 GPR32O75388 356 aa13.16□□□□□ -0.3
SHKBP1-213ENST00000597325 ERLIN2O94905 339 aa13.16□□□□□ -0.3
SHKBP1-213ENST00000597325 FGFR1OPO95684 399 aaKnown RBP13.16□□□□□ -0.3
SHKBP1-213ENST00000597325 CTSHP09668 335 aa13.16□□□□□ -0.3
SHKBP1-213ENST00000597325 SFPQP23246 707 aaKnown RBP eCLIP13.16□□□□□ -0.3
SHKBP1-213ENST00000597325 NRIP1P48552 1158 aa13.16□□□□□ -0.3
SHKBP1-213ENST00000597325 LIG4P49917 911 aa13.16□□□□□ -0.3
SHKBP1-213ENST00000597325 CRYBB1P53674 252 aaPredicted RBP13.16□□□□□ -0.3
SHKBP1-213ENST00000597325 STX17P56962 302 aa13.16□□□□□ -0.3
SHKBP1-213ENST00000597325 SRGAP1Q7Z6B7 1085 aa13.16□□□□□ -0.3
SHKBP1-213ENST00000597325 IFNLR1Q8IU57 520 aaPredicted RBP13.16□□□□□ -0.3
SHKBP1-213ENST00000597325 CCDC105Q8IYK2 499 aa13.16□□□□□ -0.3
SHKBP1-213ENST00000597325 RNF214Q8ND24 703 aa13.16□□□□□ -0.3
SHKBP1-213ENST00000597325 SPPL3Q8TCT6 385 aa13.16□□□□□ -0.3
SHKBP1-213ENST00000597325 KCNN1Q92952 543 aa13.16□□□□□ -0.3
SHKBP1-213ENST00000597325 OSMRQ99650 979 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms