RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 SRGAP2BP0DMP2 458 aa10.49□□□□□ -0.73
LIG3-216ENST00000593099 RALAP11233 206 aa10.49□□□□□ -0.73
LIG3-216ENST00000593099 PSMA2P25787 234 aa10.49□□□□□ -0.73
LIG3-216ENST00000593099 ATP5OP48047 213 aa10.49□□□□□ -0.73
LIG3-216ENST00000593099 EHHADHQ08426 723 aa10.49□□□□□ -0.73
LIG3-216ENST00000593099 ELAVL2Q12926 359 aaKnown RBP10.49□□□□□ -0.73
LIG3-216ENST00000593099 TTC31Q49AM3 519 aaPredicted RBP10.49□□□□□ -0.73
LIG3-216ENST00000593099 KAZNQ674X7 775 aa10.49□□□□□ -0.73
LIG3-216ENST00000593099 SLC27A1Q6PCB7 646 aa10.49□□□□□ -0.73
LIG3-216ENST00000593099 DDX27Q96GQ7 796 aaKnown RBP10.49□□□□□ -0.73
LIG3-216ENST00000593099 NT5C1AQ9BXI3 368 aa10.49□□□□□ -0.73
LIG3-216ENST00000593099 LIMA1Q9UHB6 759 aaKnown RBP10.49□□□□□ -0.73
LIG3-216ENST00000593099 DDX20Q9UHI6 824 aaKnown RBP10.49□□□□□ -0.73
LIG3-216ENST00000593099 ITGB4P16144 1822 aa10.49□□□□□ -0.73
LIG3-216ENST00000593099 SOWAHBA6NEL2 793 aa10.49□□□□□ -0.73
LIG3-216ENST00000593099 ZC3H11AO75152 810 aaKnown RBP eCLIP10.49□□□□□ -0.73
LIG3-216ENST00000593099 FARP2O94887 1054 aaPredicted RBP10.49□□□□□ -0.73
LIG3-216ENST00000593099 PDGFRBP09619 1106 aa10.49□□□□□ -0.73
LIG3-216ENST00000593099 ODC1P11926 461 aa10.49□□□□□ -0.73
LIG3-216ENST00000593099 XPAP23025 273 aaPredicted RBP10.49□□□□□ -0.73
LIG3-216ENST00000593099 PSMC1P62191 440 aaKnown RBP10.49□□□□□ -0.73
LIG3-216ENST00000593099 BTG3Q14201 252 aaPredicted RBP10.49□□□□□ -0.73
LIG3-216ENST00000593099 SEZ6Q53EL9 994 aa10.49□□□□□ -0.73
LIG3-216ENST00000593099 BTBD8Q5XKL5 378 aa10.49□□□□□ -0.73
LIG3-216ENST00000593099 ZPBP2Q6X784 338 aa10.49□□□□□ -0.73
LIG3-216ENST00000593099 PPP1R21Q6ZMI0 780 aa10.49□□□□□ -0.73
LIG3-216ENST00000593099 C4orf50Q6ZRC1 276 aa10.49□□□□□ -0.73
LIG3-216ENST00000593099 APEX2Q9UBZ4 518 aa10.49□□□□□ -0.73
LIG3-216ENST00000593099 PCDHB12Q9Y5F1 795 aa10.49□□□□□ -0.73
LIG3-216ENST00000593099 ZBTB22O15209 634 aa10.49□□□□□ -0.73
LIG3-216ENST00000593099 NDUFA10O95299 355 aa10.49□□□□□ -0.73
LIG3-216ENST00000593099 ITGB3P05106 788 aa10.49□□□□□ -0.73
LIG3-216ENST00000593099 SDC4P31431 198 aa10.49□□□□□ -0.73
LIG3-216ENST00000593099 ITGA7Q13683 1181 aa10.49□□□□□ -0.73
LIG3-216ENST00000593099 NBPF20Q3BBV1 942 aa10.49□□□□□ -0.73
LIG3-216ENST00000593099 CALN1Q9BXU9 219 aa10.49□□□□□ -0.73
LIG3-216ENST00000593099 TRIM31Q9BZY9 425 aa10.49□□□□□ -0.73
LIG3-216ENST00000593099 SPTLC3Q9NUV7 552 aa10.49□□□□□ -0.73
LIG3-216ENST00000593099 HDAC6Q9UBN7 1215 aa10.49□□□□□ -0.73
LIG3-216ENST00000593099 NRBP1Q9UHY1 535 aa10.49□□□□□ -0.73
LIG3-216ENST00000593099 H7C4K7 107 aa10.49□□□□□ -0.73
LIG3-216ENST00000593099 KRT1P04264 644 aa10.49□□□□□ -0.73
LIG3-216ENST00000593099 ALDH2P05091 517 aa10.49□□□□□ -0.73
LIG3-216ENST00000593099 EIF4BP23588 611 aaKnown RBP10.49□□□□□ -0.73
LIG3-216ENST00000593099 SOX5P35711 763 aa10.49□□□□□ -0.73
LIG3-216ENST00000593099 CDO1Q16878 200 aa10.49□□□□□ -0.73
LIG3-216ENST00000593099 PPP1R14CQ8TAE6 165 aa10.49□□□□□ -0.73
LIG3-216ENST00000593099 MRPL9Q9BYD2 267 aaKnown RBP10.49□□□□□ -0.73
LIG3-216ENST00000593099 ARFGAP3Q9NP61 516 aa10.49□□□□□ -0.73
LIG3-216ENST00000593099 SEPT10Q9P0V9 454 aa10.49□□□□□ -0.73
LIG3-216ENST00000593099 FAN1Q9Y2M0 1017 aa10.49□□□□□ -0.73
LIG3-216ENST00000593099 CDY2AQ9Y6F7 541 aa10.49□□□□□ -0.73
LIG3-216ENST00000593099 NUP98P52948 1817 aa10.49□□□□□ -0.73
LIG3-216ENST00000593099 TBKBP1A7MCY6 615 aa10.48□□□□□ -0.73
LIG3-216ENST00000593099 URODP06132 367 aa10.48□□□□□ -0.73
LIG3-216ENST00000593099 MRPS6P82932 125 aaKnown RBP10.48□□□□□ -0.73
LIG3-216ENST00000593099 MYBPC2Q14324 1141 aa10.48□□□□□ -0.73
LIG3-216ENST00000593099 MAPRE1Q15691 268 aaKnown RBP10.48□□□□□ -0.73
LIG3-216ENST00000593099 C1orf228Q6PIY5 440 aa10.48□□□□□ -0.73
LIG3-216ENST00000593099 LRRC31Q6UY01 552 aa10.48□□□□□ -0.73
LIG3-216ENST00000593099 CBWD2Q8IUF1 395 aa10.48□□□□□ -0.73
LIG3-216ENST00000593099 GRK7Q8WTQ7 553 aa10.48□□□□□ -0.73
LIG3-216ENST00000593099 CBWD1Q9BRT8 395 aa10.48□□□□□ -0.73
LIG3-216ENST00000593099 KIF9Q9HAQ2 790 aa10.48□□□□□ -0.73
LIG3-216ENST00000593099 LCMT1Q9UIC8 334 aa10.48□□□□□ -0.73
LIG3-216ENST00000593099 TADA2BQ86TJ2 420 aa10.48□□□□□ -0.73
LIG3-216ENST00000593099 GLYCTKQ8IVS8 523 aa10.48□□□□□ -0.73
LIG3-216ENST00000593099 ASNSD1Q9NWL6 643 aa10.48□□□□□ -0.73
LIG3-216ENST00000593099 ZNF148Q9UQR1 794 aa10.48□□□□□ -0.73
LIG3-216ENST00000593099 TACC3Q9Y6A5 838 aa10.48□□□□□ -0.73
LIG3-216ENST00000593099 STK25O00506 426 aa10.48□□□□□ -0.73
LIG3-216ENST00000593099 KRIT1O00522 736 aa10.48□□□□□ -0.73
LIG3-216ENST00000593099 MMP3P08254 477 aa10.48□□□□□ -0.73
LIG3-216ENST00000593099 C4AP0C0L4 1744 aa10.48□□□□□ -0.73
LIG3-216ENST00000593099 FGFR4P22455 802 aa10.48□□□□□ -0.73
LIG3-216ENST00000593099 ICAM3P32942 547 aa10.48□□□□□ -0.73
LIG3-216ENST00000593099 HSDL1Q3SXM5 330 aa10.48□□□□□ -0.73
LIG3-216ENST00000593099 BSPRYQ5W0U4 402 aa10.48□□□□□ -0.73
LIG3-216ENST00000593099 CASC4Q6P4E1 433 aa10.48□□□□□ -0.73
LIG3-216ENST00000593099 CTU1Q7Z7A3 348 aaKnown RBP10.48□□□□□ -0.73
LIG3-216ENST00000593099 RYBPQ8N488 228 aaPredicted RBP10.48□□□□□ -0.73
LIG3-216ENST00000593099 KCTD6Q8NC69 237 aa10.48□□□□□ -0.73
LIG3-216ENST00000593099 ETNPPLQ8TBG4 499 aa10.48□□□□□ -0.73
LIG3-216ENST00000593099 ADAM2Q99965 735 aa10.48□□□□□ -0.73
LIG3-216ENST00000593099 STK33Q9BYT3 514 aa10.48□□□□□ -0.73
LIG3-216ENST00000593099 LRRD1A4D1F6 860 aa10.48□□□□□ -0.73
LIG3-216ENST00000593099 TEX33O43247 280 aa10.48□□□□□ -0.73
LIG3-216ENST00000593099 EVI5O60447 810 aa10.48□□□□□ -0.73
LIG3-216ENST00000593099 MAFO75444 373 aaPredicted RBP10.48□□□□□ -0.73
LIG3-216ENST00000593099 GNL1P36915 607 aaPredicted RBP10.48□□□□□ -0.73
LIG3-216ENST00000593099 CCL23P55773 120 aa10.48□□□□□ -0.73
LIG3-216ENST00000593099 JAG1P78504 1218 aa10.48□□□□□ -0.73
LIG3-216ENST00000593099 ITGB3BPQ13352 177 aaPredicted RBP10.48□□□□□ -0.73
LIG3-216ENST00000593099 BIRC2Q13490 618 aa10.48□□□□□ -0.73
LIG3-216ENST00000593099 MGAT5BQ3V5L5 792 aa10.48□□□□□ -0.73
LIG3-216ENST00000593099 NAA35Q5VZE5 725 aa10.48□□□□□ -0.73
LIG3-216ENST00000593099 RBBP8NLQ8NC74 664 aaPredicted RBP10.48□□□□□ -0.73
LIG3-216ENST00000593099 GPR20Q99678 358 aa10.48□□□□□ -0.73
LIG3-216ENST00000593099 CELF4Q9BZC1 486 aaKnown RBP10.48□□□□□ -0.73
LIG3-216ENST00000593099 PCDHA13Q9Y5I0 950 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms