RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 COLEC11Q9BWP8 271 aa12.99□□□□□ -0.33
LIG3-213ENST00000590630 HAPLN2Q9GZV7 340 aa12.99□□□□□ -0.33
LIG3-213ENST00000590630 BLZF1Q9H2G9 400 aa12.99□□□□□ -0.33
LIG3-213ENST00000590630 GOLPH3LQ9H4A5 285 aa12.99□□□□□ -0.33
LIG3-213ENST00000590630 TMEM206Q9H813 350 aa12.99□□□□□ -0.33
LIG3-213ENST00000590630 PLEKHA5Q9HAU0 1116 aa12.99□□□□□ -0.33
LIG3-213ENST00000590630 ENTPD7Q9NQZ7 604 aa12.99□□□□□ -0.33
LIG3-213ENST00000590630 SLC38A7Q9NVC3 462 aa12.99□□□□□ -0.33
LIG3-213ENST00000590630 CNTN3Q9P232 1028 aa12.99□□□□□ -0.33
LIG3-213ENST00000590630 COG5Q9UP83 839 aa12.99□□□□□ -0.33
LIG3-213ENST00000590630 C5orf42Q9H799 3197 aa12.99□□□□□ -0.33
LIG3-213ENST00000590630 UBE4BO95155 1302 aa12.98□□□□□ -0.33
LIG3-213ENST00000590630 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.98□□□□□ -0.33
LIG3-213ENST00000590630 SMIM28A0A1B0GU29 152 aa12.98□□□□□ -0.33
LIG3-213ENST00000590630 FSD2A1L4K1 749 aa12.98□□□□□ -0.33
LIG3-213ENST00000590630 ZNF202O95125 648 aa12.98□□□□□ -0.33
LIG3-213ENST00000590630 CSPG5O95196 566 aa12.98□□□□□ -0.33
LIG3-213ENST00000590630 KCNE1P15382 129 aa12.98□□□□□ -0.33
LIG3-213ENST00000590630 CASP1P29466 404 aa12.98□□□□□ -0.33
LIG3-213ENST00000590630 IRS1P35568 1242 aa12.98□□□□□ -0.33
LIG3-213ENST00000590630 ERVFC1P60507 584 aa12.98□□□□□ -0.33
LIG3-213ENST00000590630 KCNA1Q09470 495 aa12.98□□□□□ -0.33
LIG3-213ENST00000590630 COL19A1Q14993 1142 aa12.98□□□□□ -0.33
LIG3-213ENST00000590630 NAB2Q15742 525 aa12.98□□□□□ -0.33
LIG3-213ENST00000590630 TPRNQ4KMQ1 711 aa12.98□□□□□ -0.33
LIG3-213ENST00000590630 KRBA2Q6ZNG9 492 aa12.98□□□□□ -0.33
LIG3-213ENST00000590630 TMC7Q7Z402 723 aa12.98□□□□□ -0.33
LIG3-213ENST00000590630 GRAMD1CQ8IYS0 662 aa12.98□□□□□ -0.33
LIG3-213ENST00000590630 SYCP3Q8IZU3 236 aa12.98□□□□□ -0.33
LIG3-213ENST00000590630 VPS52Q8N1B4 723 aa12.98□□□□□ -0.33
LIG3-213ENST00000590630 BCL7CQ8WUZ0 217 aaPredicted RBP12.98□□□□□ -0.33
LIG3-213ENST00000590630 FGFBP2Q9BYJ0 223 aa12.98□□□□□ -0.33
LIG3-213ENST00000590630 CXCL16Q9H2A7 254 aa12.98□□□□□ -0.33
LIG3-213ENST00000590630 MARCH5Q9NX47 278 aa12.98□□□□□ -0.33
LIG3-213ENST00000590630 THEGQ9P2T0 379 aa12.98□□□□□ -0.33
LIG3-213ENST00000590630 PRG3Q9Y2Y8 225 aaPredicted RBP12.98□□□□□ -0.33
LIG3-213ENST00000590630 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.98□□□□□ -0.33
LIG3-213ENST00000590630 ANKRD63C9JTQ0 380 aa12.97□□□□□ -0.33
LIG3-213ENST00000590630 CXCL8P10145 99 aa12.97□□□□□ -0.33
LIG3-213ENST00000590630 POU5F1Q01860 360 aaKnown RBP12.97□□□□□ -0.33
LIG3-213ENST00000590630 HSP90AA2PQ14568 343 aaPredicted RBP12.97□□□□□ -0.33
LIG3-213ENST00000590630 SMC1AQ14683 1233 aaKnown RBP12.97□□□□□ -0.33
LIG3-213ENST00000590630 SLC10A6Q3KNW5 377 aa12.97□□□□□ -0.33
LIG3-213ENST00000590630 SEZ6Q53EL9 994 aa12.97□□□□□ -0.33
LIG3-213ENST00000590630 GLRA4Q5JXX5 417 aa12.97□□□□□ -0.33
LIG3-213ENST00000590630 PLPP4Q5VZY2 271 aa12.97□□□□□ -0.33
LIG3-213ENST00000590630 KANK3Q6NY19 840 aa12.97□□□□□ -0.33
LIG3-213ENST00000590630 EPM2AIP1Q7L775 607 aaPredicted RBP12.97□□□□□ -0.33
LIG3-213ENST00000590630 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.97□□□□□ -0.33
LIG3-213ENST00000590630 POMGNT1Q8WZA1 660 aa12.97□□□□□ -0.33
LIG3-213ENST00000590630 HLA-CQ95604 372 aa12.97□□□□□ -0.33
LIG3-213ENST00000590630 HPS3Q969F9 1004 aa12.97□□□□□ -0.33
LIG3-213ENST00000590630 UROC1Q96N76 676 aa12.97□□□□□ -0.33
LIG3-213ENST00000590630 TSPAN18Q96SJ8 248 aa12.97□□□□□ -0.33
LIG3-213ENST00000590630 CDCA3Q99618 268 aaPredicted RBP12.97□□□□□ -0.33
LIG3-213ENST00000590630 ZBP1Q9H171 429 aa12.97□□□□□ -0.33
LIG3-213ENST00000590630 EXOC1Q9NV70 894 aa12.97□□□□□ -0.33
LIG3-213ENST00000590630 ADAM28Q9UKQ2 775 aa12.97□□□□□ -0.33
LIG3-213ENST00000590630 AGO2Q9UKV8 859 aaKnown RBP12.97□□□□□ -0.33
LIG3-213ENST00000590630 IRAK3Q9Y616 596 aa12.97□□□□□ -0.33
LIG3-213ENST00000590630 TTC26A0AVF1 554 aa12.96□□□□□ -0.33
LIG3-213ENST00000590630 CASTOR2A6NHX0 329 aa12.96□□□□□ -0.33
LIG3-213ENST00000590630 TISP43B9A030 160 aa12.96□□□□□ -0.33
LIG3-213ENST00000590630 MEFVO15553 781 aaPredicted RBP12.96□□□□□ -0.33
LIG3-213ENST00000590630 KLRC4O43908 158 aa12.96□□□□□ -0.33
LIG3-213ENST00000590630 PRPF6O94906 941 aaKnown RBP12.96□□□□□ -0.33
LIG3-213ENST00000590630 EFEMP2O95967 443 aa12.96□□□□□ -0.33
LIG3-213ENST00000590630 SOD2P04179 222 aa12.96□□□□□ -0.33
LIG3-213ENST00000590630 CTSAP10619 480 aa12.96□□□□□ -0.33
LIG3-213ENST00000590630 GARTP22102 1010 aa12.96□□□□□ -0.33
LIG3-213ENST00000590630 ADSSP30520 456 aa12.96□□□□□ -0.33
LIG3-213ENST00000590630 TNFSF9P41273 254 aa12.96□□□□□ -0.33
LIG3-213ENST00000590630 FAM160A1Q05DH4 1040 aa12.96□□□□□ -0.33
LIG3-213ENST00000590630 PPP2R3AQ06190 1150 aa12.96□□□□□ -0.33
LIG3-213ENST00000590630 HYAL1Q12794 435 aa12.96□□□□□ -0.33
LIG3-213ENST00000590630 PSMD2Q13200 908 aa12.96□□□□□ -0.33
LIG3-213ENST00000590630 ENOX2Q16206 610 aaKnown RBP12.96□□□□□ -0.33
LIG3-213ENST00000590630 AAK1Q2M2I8 961 aa12.96□□□□□ -0.33
LIG3-213ENST00000590630 ADGRD2Q7Z7M1 963 aa12.96□□□□□ -0.33
LIG3-213ENST00000590630 CD302Q8IX05 232 aa12.96□□□□□ -0.33
LIG3-213ENST00000590630 RNF168Q8IYW5 571 aaPredicted RBP12.96□□□□□ -0.33
LIG3-213ENST00000590630 FMR1NBQ8N0W7 255 aaPredicted RBP12.96□□□□□ -0.33
LIG3-213ENST00000590630 MRPL43Q8N983 215 aaKnown RBP12.96□□□□□ -0.33
LIG3-213ENST00000590630 GLIS3Q8NEA6 775 aa12.96□□□□□ -0.33
LIG3-213ENST00000590630 ZNF507Q8TCN5 953 aa12.96□□□□□ -0.33
LIG3-213ENST00000590630 ATXN2LQ8WWM7 1075 aaKnown RBP12.96□□□□□ -0.33
LIG3-213ENST00000590630 PABPC5Q96DU9 382 aaKnown RBP12.96□□□□□ -0.33
LIG3-213ENST00000590630 DDX27Q96GQ7 796 aaKnown RBP12.96□□□□□ -0.33
LIG3-213ENST00000590630 ZMAT2Q96NC0 199 aaKnown RBP12.96□□□□□ -0.33
LIG3-213ENST00000590630 PAAF1Q9BRP4 392 aa12.96□□□□□ -0.33
LIG3-213ENST00000590630 VN1R3Q9BXE9 311 aa12.96□□□□□ -0.33
LIG3-213ENST00000590630 IKZF4Q9H2S9 585 aa12.96□□□□□ -0.33
LIG3-213ENST00000590630 TLE6Q9H808 572 aa12.96□□□□□ -0.33
LIG3-213ENST00000590630 RPF1Q9H9Y2 349 aaKnown RBP12.96□□□□□ -0.33
LIG3-213ENST00000590630 PRDM6Q9NQX0 595 aa12.96□□□□□ -0.33
LIG3-213ENST00000590630 CPSF3Q9UKF6 684 aaKnown RBP12.96□□□□□ -0.33
LIG3-213ENST00000590630 PCDHGC5Q9Y5F6 944 aa12.96□□□□□ -0.33
LIG3-213ENST00000590630 VWA8A3KMH1 1905 aa12.96□□□□□ -0.34
LIG3-213ENST00000590630 NCOR1O75376 2440 aa12.96□□□□□ -0.34
LIG3-213ENST00000590630 SF3B1O75533 1304 aaKnown RBP eCLIP12.95□□□□□ -0.343e-9■■■■■ 206.8
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms