RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 PABPC5Q96DU9 382 aaKnown RBP12.35□□□□□ -0.43
SMAD4-211ENST00000590499 CDK5RAP3Q96JB5 506 aa12.35□□□□□ -0.43
SMAD4-211ENST00000590499 DRC1Q96MC2 740 aa12.35□□□□□ -0.43
SMAD4-211ENST00000590499 ZFP42Q96MM3 310 aa12.35□□□□□ -0.43
SMAD4-211ENST00000590499 C17orf75Q9HAS0 396 aa12.35□□□□□ -0.43
SMAD4-211ENST00000590499 TLR9Q9NR96 1032 aa12.35□□□□□ -0.43
SMAD4-211ENST00000590499 SPG21Q9NZD8 308 aa12.35□□□□□ -0.43
SMAD4-211ENST00000590499 KCND2Q9NZV8 630 aa12.35□□□□□ -0.43
SMAD4-211ENST00000590499 MAP10Q9P2G4 905 aa12.35□□□□□ -0.43
SMAD4-211ENST00000590499 INPP5FQ9Y2H2 1132 aa12.35□□□□□ -0.43
SMAD4-211ENST00000590499 USP20Q9Y2K6 914 aa12.35□□□□□ -0.43
SMAD4-211ENST00000590499 PCDHGC5Q9Y5F6 944 aa12.35□□□□□ -0.43
SMAD4-211ENST00000590499 SRPRBQ9Y5M8 271 aaKnown RBP12.35□□□□□ -0.43
SMAD4-211ENST00000590499 WASF2Q9Y6W5 498 aa12.35□□□□□ -0.43
SMAD4-211ENST00000590499 ARL5CA6NH57 179 aa12.34□□□□□ -0.43
SMAD4-211ENST00000590499 ZC3H11AO75152 810 aaKnown RBP eCLIP12.34□□□□□ -0.43
SMAD4-211ENST00000590499 CSPG5O95196 566 aa12.34□□□□□ -0.43
SMAD4-211ENST00000590499 NPTXRO95502 500 aa12.34□□□□□ -0.43
SMAD4-211ENST00000590499 GALTP07902 379 aa12.34□□□□□ -0.43
SMAD4-211ENST00000590499 PLCG1P19174 1290 aa12.34□□□□□ -0.43
SMAD4-211ENST00000590499 GTF2F1P35269 517 aaKnown RBP eCLIP12.34□□□□□ -0.43
SMAD4-211ENST00000590499 LTBRP36941 435 aa12.34□□□□□ -0.43
SMAD4-211ENST00000590499 KCNQ1P51787 676 aa12.34□□□□□ -0.43
SMAD4-211ENST00000590499 ERVFC1P60507 584 aa12.34□□□□□ -0.43
SMAD4-211ENST00000590499 DMP1Q13316 513 aaPredicted RBP12.34□□□□□ -0.43
SMAD4-211ENST00000590499 PRPF4BQ13523 1007 aaKnown RBP12.34□□□□□ -0.43
SMAD4-211ENST00000590499 SLC39A14Q15043 492 aa12.34□□□□□ -0.43
SMAD4-211ENST00000590499 AAK1Q2M2I8 961 aa12.34□□□□□ -0.43
SMAD4-211ENST00000590499 NT5DC1Q5TFE4 455 aa12.34□□□□□ -0.43
SMAD4-211ENST00000590499 EEF1DP3Q658K8 133 aa12.34□□□□□ -0.43
SMAD4-211ENST00000590499 URGCPQ8TCY9 931 aa12.34□□□□□ -0.43
SMAD4-211ENST00000590499 BCL7CQ8WUZ0 217 aaPredicted RBP12.34□□□□□ -0.43
SMAD4-211ENST00000590499 RAD54LQ92698 747 aa12.34□□□□□ -0.43
SMAD4-211ENST00000590499 CALML4Q96GE6 196 aa12.34□□□□□ -0.43
SMAD4-211ENST00000590499 EPSTI1Q96J88 318 aa12.34□□□□□ -0.43
SMAD4-211ENST00000590499 GAD1Q99259 594 aa12.34□□□□□ -0.43
SMAD4-211ENST00000590499 NTPCRQ9BSD7 190 aaKnown RBP12.34□□□□□ -0.43
SMAD4-211ENST00000590499 UBN1Q9NPG3 1134 aa12.34□□□□□ -0.43
SMAD4-211ENST00000590499 DNAJB4Q9UDY4 337 aa12.34□□□□□ -0.43
SMAD4-211ENST00000590499 GIT1Q9Y2X7 761 aa12.34□□□□□ -0.43
SMAD4-211ENST00000590499 PHLPP2Q6ZVD8 1323 aa12.34□□□□□ -0.43
SMAD4-211ENST00000590499 NPHP3-ACAD11A0A0J9YXS1 232 aa12.33□□□□□ -0.44
SMAD4-211ENST00000590499 CARNS1A5YM72 827 aa12.33□□□□□ -0.44
SMAD4-211ENST00000590499 NT5C1B-RDH14C9J2C7 533 aa12.33□□□□□ -0.44
SMAD4-211ENST00000590499 DLL1O00548 723 aa12.33□□□□□ -0.44
SMAD4-211ENST00000590499 N4BP3O15049 544 aa12.33□□□□□ -0.44
SMAD4-211ENST00000590499 NCK2O43639 380 aa12.33□□□□□ -0.44
SMAD4-211ENST00000590499 DDHD2O94830 711 aa12.33□□□□□ -0.44
SMAD4-211ENST00000590499 F12P00748 615 aaPredicted RBP12.33□□□□□ -0.44
SMAD4-211ENST00000590499 SSBP05455 408 aaKnown RBP eCLIP12.33□□□□□ -0.44
SMAD4-211ENST00000590499 PDIA4P13667 645 aaKnown RBP12.33□□□□□ -0.44
SMAD4-211ENST00000590499 MLH1P40692 756 aa12.33□□□□□ -0.44
SMAD4-211ENST00000590499 SLC11A1P49279 550 aa12.33□□□□□ -0.44
SMAD4-211ENST00000590499 ALDH7A1P49419 539 aaKnown RBP12.33□□□□□ -0.44
SMAD4-211ENST00000590499 CEBPZQ03701 1054 aaKnown RBP12.33□□□□□ -0.44
SMAD4-211ENST00000590499 DSC1Q08554 894 aa12.33□□□□□ -0.44
SMAD4-211ENST00000590499 RAD51AP2Q09MP3 1159 aa12.33□□□□□ -0.44
SMAD4-211ENST00000590499 PKP1Q13835 747 aa12.33□□□□□ -0.44
SMAD4-211ENST00000590499 LEXMQ3ZCV2 418 aa12.33□□□□□ -0.44
SMAD4-211ENST00000590499 SPECC1Q5M775 1068 aa12.33□□□□□ -0.44
SMAD4-211ENST00000590499 PDE12Q6L8Q7 609 aaKnown RBP12.33□□□□□ -0.44
SMAD4-211ENST00000590499 LINC00301Q8NCQ3 95 aa12.33□□□□□ -0.44
SMAD4-211ENST00000590499 KCNN1Q92952 543 aa12.33□□□□□ -0.44
SMAD4-211ENST00000590499 IGSF21Q96ID5 467 aa12.33□□□□□ -0.44
SMAD4-211ENST00000590499 CLIC6Q96NY7 704 aa12.33□□□□□ -0.44
SMAD4-211ENST00000590499 APOL6Q9BWW8 343 aa12.33□□□□□ -0.44
SMAD4-211ENST00000590499 TRIM6Q9C030 488 aaPredicted RBP12.33□□□□□ -0.44
SMAD4-211ENST00000590499 MIOSQ9NXC5 875 aa12.33□□□□□ -0.44
SMAD4-211ENST00000590499 KANSL3Q9P2N6 904 aa12.33□□□□□ -0.44
SMAD4-211ENST00000590499 CITO14578 2027 aa12.33□□□□□ -0.44
SMAD4-211ENST00000590499 CCDC169A6NNP5 214 aa12.32□□□□□ -0.44
SMAD4-211ENST00000590499 SFI1A8K8P3 1242 aa12.32□□□□□ -0.44
SMAD4-211ENST00000590499 K7ERI5 159 aa12.32□□□□□ -0.44
SMAD4-211ENST00000590499 ABLIM1O14639 778 aa12.32□□□□□ -0.44
SMAD4-211ENST00000590499 TBX10O75333 385 aa12.32□□□□□ -0.44
SMAD4-211ENST00000590499 F13A1P00488 732 aa12.32□□□□□ -0.44
SMAD4-211ENST00000590499 POMCP01189 267 aa12.32□□□□□ -0.44
SMAD4-211ENST00000590499 ZSCAN22P10073 491 aaPredicted RBP12.32□□□□□ -0.44
SMAD4-211ENST00000590499 PLS3P13797 630 aa12.32□□□□□ -0.44
SMAD4-211ENST00000590499 LIG1P18858 919 aa12.32□□□□□ -0.44
SMAD4-211ENST00000590499 KCNA5P22460 613 aa12.32□□□□□ -0.44
SMAD4-211ENST00000590499 AKAP5P24588 427 aa12.32□□□□□ -0.44
SMAD4-211ENST00000590499 SCNN1GP51170 649 aa12.32□□□□□ -0.44
SMAD4-211ENST00000590499 ZNF131P52739 623 aa12.32□□□□□ -0.44
SMAD4-211ENST00000590499 RNASELQ05823 741 aaKnown RBP12.32□□□□□ -0.44
SMAD4-211ENST00000590499 ADAM15Q13444 863 aa12.32□□□□□ -0.44
SMAD4-211ENST00000590499 MCM6Q14566 821 aa12.32□□□□□ -0.44
SMAD4-211ENST00000590499 GPBP1Q86WP2 473 aa12.32□□□□□ -0.44
SMAD4-211ENST00000590499 COLGALT2Q8IYK4 626 aa12.32□□□□□ -0.44
SMAD4-211ENST00000590499 HACE1Q8IYU2 909 aa12.32□□□□□ -0.44
SMAD4-211ENST00000590499 EFHBQ8N7U6 833 aa12.32□□□□□ -0.44
SMAD4-211ENST00000590499 TMEM161BQ8NDZ6 487 aa12.32□□□□□ -0.44
SMAD4-211ENST00000590499 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.32□□□□□ -0.44
SMAD4-211ENST00000590499 REEP2Q9BRK0 252 aa12.32□□□□□ -0.44
SMAD4-211ENST00000590499 TMEM175Q9BSA9 504 aa12.32□□□□□ -0.44
SMAD4-211ENST00000590499 VN1R3Q9BXE9 311 aa12.32□□□□□ -0.44
SMAD4-211ENST00000590499 KDM4CQ9H3R0 1056 aa12.32□□□□□ -0.44
SMAD4-211ENST00000590499 PTPRHQ9HD43 1115 aa12.32□□□□□ -0.44
SMAD4-211ENST00000590499 KMT5AQ9NQR1 393 aa12.32□□□□□ -0.44
SMAD4-211ENST00000590499 PUF60Q9UHX1 559 aaKnown RBP12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms