RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 MCL1Q07820 350 aa16.62■□□□□ 0.25
CLIP3-202ENST00000585466 BMS1Q14692 1282 aaKnown RBP16.62■□□□□ 0.25
CLIP3-202ENST00000585466 RTP2Q5QGT7 225 aa16.62■□□□□ 0.25
CLIP3-202ENST00000585466 SLC39A4Q6P5W5 647 aa16.62■□□□□ 0.25
CLIP3-202ENST00000585466 GPR65Q8IYL9 337 aa16.62■□□□□ 0.25
CLIP3-202ENST00000585466 C12orf76Q8N812 135 aaPredicted RBP16.62■□□□□ 0.25
CLIP3-202ENST00000585466 KRI1Q8N9T8 703 aaKnown RBP16.62■□□□□ 0.25
CLIP3-202ENST00000585466 C3orf58Q8NDZ4 430 aa16.62■□□□□ 0.25
CLIP3-202ENST00000585466 HASPINQ8TF76 798 aa16.62■□□□□ 0.25
CLIP3-202ENST00000585466 DNAJC19Q96DA6 116 aa16.62■□□□□ 0.25
CLIP3-202ENST00000585466 PHF7Q9BWX1 381 aaPredicted RBP16.62■□□□□ 0.25
CLIP3-202ENST00000585466 ADAM7Q9H2U9 754 aa16.62■□□□□ 0.25
CLIP3-202ENST00000585466 PARVGQ9HBI0 331 aa16.62■□□□□ 0.25
CLIP3-202ENST00000585466 MRPL17Q9NRX2 175 aaKnown RBP16.62■□□□□ 0.25
CLIP3-202ENST00000585466 STK17AQ9UEE5 414 aa16.62■□□□□ 0.25
CLIP3-202ENST00000585466 KCNG1Q9UIX4 513 aa16.62■□□□□ 0.25
CLIP3-202ENST00000585466 ANK1P16157 1881 aa16.62■□□□□ 0.25
CLIP3-202ENST00000585466 TECTAO75443 2155 aa16.62■□□□□ 0.25
CLIP3-202ENST00000585466 MYMKA6NI61 221 aa16.61■□□□□ 0.25
CLIP3-202ENST00000585466 TMEM189-UBE2V1I3L0A0 370 aa16.61■□□□□ 0.25
CLIP3-202ENST00000585466 C2CD2LO14523 706 aa16.61■□□□□ 0.25
CLIP3-202ENST00000585466 PAPLNO95428 1278 aa16.61■□□□□ 0.25
CLIP3-202ENST00000585466 ZSCAN22P10073 491 aaPredicted RBP16.61■□□□□ 0.25
CLIP3-202ENST00000585466 OSTNP61366 133 aa16.61■□□□□ 0.25
CLIP3-202ENST00000585466 NOLC1Q14978 699 aaKnown RBP eCLIP16.61■□□□□ 0.25
CLIP3-202ENST00000585466 SLC10A6Q3KNW5 377 aa16.61■□□□□ 0.25
CLIP3-202ENST00000585466 SEZ6Q53EL9 994 aa16.61■□□□□ 0.25
CLIP3-202ENST00000585466 STRA6Q9BX79 667 aa16.61■□□□□ 0.25
CLIP3-202ENST00000585466 GOLGA2P5Q9HBQ8 144 aa16.61■□□□□ 0.25
CLIP3-202ENST00000585466 DZANK1Q9NVP4 752 aa16.61■□□□□ 0.25
CLIP3-202ENST00000585466 CNTN3Q9P232 1028 aa16.61■□□□□ 0.25
CLIP3-202ENST00000585466 TFIP11Q9UBB9 837 aaKnown RBP16.61■□□□□ 0.25
CLIP3-202ENST00000585466 RAPGEFL1Q9UHV5 662 aa16.61■□□□□ 0.25
CLIP3-202ENST00000585466 TBX20Q9UMR3 447 aa16.61■□□□□ 0.25
CLIP3-202ENST00000585466 TRAK2O60296 914 aa16.6■□□□□ 0.25
CLIP3-202ENST00000585466 NR1I2O75469 434 aa16.6■□□□□ 0.25
CLIP3-202ENST00000585466 PPP1R37O75864 691 aa16.6■□□□□ 0.25
CLIP3-202ENST00000585466 FAM13AO94988 1023 aa16.6■□□□□ 0.25
CLIP3-202ENST00000585466 F13A1P00488 732 aa16.6■□□□□ 0.25
CLIP3-202ENST00000585466 WEE2P0C1S8 567 aa16.6■□□□□ 0.25
CLIP3-202ENST00000585466 KCNE1P15382 129 aa16.6■□□□□ 0.25
CLIP3-202ENST00000585466 NMT1P30419 496 aaKnown RBP16.6■□□□□ 0.25
CLIP3-202ENST00000585466 GTF2BQ00403 316 aa16.6■□□□□ 0.25
CLIP3-202ENST00000585466 ITIH3Q06033 890 aa16.6■□□□□ 0.25
CLIP3-202ENST00000585466 STRN3Q13033 797 aa16.6■□□□□ 0.25
CLIP3-202ENST00000585466 UPP1Q16831 310 aa16.6■□□□□ 0.25
CLIP3-202ENST00000585466 USP41Q3LFD5 358 aa16.6■□□□□ 0.25
CLIP3-202ENST00000585466 TPRNQ4KMQ1 711 aa16.6■□□□□ 0.25
CLIP3-202ENST00000585466 APBB1IPQ7Z5R6 666 aaPredicted RBP16.6■□□□□ 0.25
CLIP3-202ENST00000585466 PPFIBP1Q86W92 1011 aa16.6■□□□□ 0.25
CLIP3-202ENST00000585466 TMEM130Q8N3G9 435 aa16.6■□□□□ 0.25
CLIP3-202ENST00000585466 MYCT1Q8N699 235 aa16.6■□□□□ 0.25
CLIP3-202ENST00000585466 RASSF8Q8NHQ8 419 aa16.6■□□□□ 0.25
CLIP3-202ENST00000585466 FBXL18Q96ME1 805 aa16.6■□□□□ 0.25
CLIP3-202ENST00000585466 POP1Q99575 1024 aaKnown RBP16.6■□□□□ 0.25
CLIP3-202ENST00000585466 CCDC94Q9BW85 323 aaPredicted RBP16.6■□□□□ 0.25
CLIP3-202ENST00000585466 EMILIN2Q9BXX0 1053 aa16.6■□□□□ 0.25
CLIP3-202ENST00000585466 ST6GALNAC4Q9H4F1 302 aa16.6■□□□□ 0.25
CLIP3-202ENST00000585466 POMKQ9H5K3 350 aa16.6■□□□□ 0.25
CLIP3-202ENST00000585466 ANKFY1Q9P2R3 1169 aa16.6■□□□□ 0.25
CLIP3-202ENST00000585466 SF3B1O75533 1304 aaKnown RBP eCLIP16.6■□□□□ 0.25
CLIP3-202ENST00000585466 DOCK6Q96HP0 2047 aa16.6■□□□□ 0.25
CLIP3-202ENST00000585466 H0YCG3 227 aa16.59■□□□□ 0.25
CLIP3-202ENST00000585466 K7ENM7 598 aa16.59■□□□□ 0.25
CLIP3-202ENST00000585466 SPTLC2O15270 562 aa16.59■□□□□ 0.25
CLIP3-202ENST00000585466 PPP6R2O75170 966 aa16.59■□□□□ 0.25
CLIP3-202ENST00000585466 YEATS4O95619 227 aa16.59■□□□□ 0.25
CLIP3-202ENST00000585466 KLRC2P26717 231 aa16.59■□□□□ 0.25
CLIP3-202ENST00000585466 CLCNKBP51801 687 aa16.59■□□□□ 0.25
CLIP3-202ENST00000585466 E2F4Q16254 413 aa16.59■□□□□ 0.25
CLIP3-202ENST00000585466 ZBTB41Q5SVQ8 909 aa16.59■□□□□ 0.25
CLIP3-202ENST00000585466 RARS2Q5T160 578 aaKnown RBP16.59■□□□□ 0.25
CLIP3-202ENST00000585466 AXDND1Q5T1B0 1012 aaPredicted RBP16.59■□□□□ 0.25
CLIP3-202ENST00000585466 FOXD4L5Q5VV16 416 aaPredicted RBP16.59■□□□□ 0.25
CLIP3-202ENST00000585466 RRAGBQ5VZM2 374 aa16.59■□□□□ 0.25
CLIP3-202ENST00000585466 LILRA6Q6PI73 481 aa16.59■□□□□ 0.25
CLIP3-202ENST00000585466 PRSS55Q6UWB4 352 aaPredicted RBP16.59■□□□□ 0.25
CLIP3-202ENST00000585466 RNF135Q8IUD6 432 aa16.59■□□□□ 0.25
CLIP3-202ENST00000585466 MAP4K3Q8IVH8 894 aa16.59■□□□□ 0.25
CLIP3-202ENST00000585466 FOXD4L4Q8WXT5 416 aaPredicted RBP16.59■□□□□ 0.25
CLIP3-202ENST00000585466 PIK3R5Q8WYR1 880 aa16.59■□□□□ 0.25
CLIP3-202ENST00000585466 DDX12PQ92771 950 aa16.59■□□□□ 0.25
CLIP3-202ENST00000585466 ACAP3Q96P50 834 aa16.59■□□□□ 0.25
CLIP3-202ENST00000585466 IKZF4Q9H2S9 585 aa16.59■□□□□ 0.25
CLIP3-202ENST00000585466 FNIP2Q9P278 1114 aa16.59■□□□□ 0.25
CLIP3-202ENST00000585466 SSX2IPQ9Y2D8 614 aa16.59■□□□□ 0.25
CLIP3-202ENST00000585466 DOCK8Q8NF50 2099 aa16.58■□□□□ 0.25
CLIP3-202ENST00000585466 MYO10Q9HD67 2058 aa16.58■□□□□ 0.25
CLIP3-202ENST00000585466 FRMD3A2A2Y4 597 aa16.58■□□□□ 0.24
CLIP3-202ENST00000585466 TISP43B9A030 160 aa16.58■□□□□ 0.24
CLIP3-202ENST00000585466 TADA2AO75478 443 aa16.58■□□□□ 0.24
CLIP3-202ENST00000585466 ADRB2P07550 413 aa16.58■□□□□ 0.24
CLIP3-202ENST00000585466 HARSP12081 509 aaKnown RBP16.58■□□□□ 0.24
CLIP3-202ENST00000585466 RPL17P18621 184 aaKnown RBP16.58■□□□□ 0.24
CLIP3-202ENST00000585466 SCP2P22307 547 aa16.58■□□□□ 0.24
CLIP3-202ENST00000585466 TNFSF9P41273 254 aa16.58■□□□□ 0.24
CLIP3-202ENST00000585466 STK38Q15208 465 aa16.58■□□□□ 0.24
CLIP3-202ENST00000585466 ZC2HC1CQ53FD0 456 aaPredicted RBP16.58■□□□□ 0.24
CLIP3-202ENST00000585466 HERC4Q5GLZ8 1057 aaPredicted RBP16.58■□□□□ 0.24
CLIP3-202ENST00000585466 KIAA1841Q6NSI8 718 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms