RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	VAV3	Q9UKW4	847 aa		12.43	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	SPO11	Q9Y5K1	396 aa		12.43	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	KDM3A	Q9Y4C1	1321 aa		12.43	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063		A0A1W2PRQ8	180 aa		12.42	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	GOLGA6L10	A6NI86	522 aa		12.42	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	CETN3	O15182	167 aa		12.42	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	GCFC2	P16383	781 aa	Known RBP	12.42	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	RDX	P35241	583 aa	Known RBP	12.42	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	PPP2R5C	Q13362	524 aa		12.42	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	ARHGAP44	Q17R89	818 aa		12.42	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	IRF2BP2	Q7Z5L9	587 aa		12.42	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	GLYCTK	Q8IVS8	523 aa		12.42	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	PEX5L	Q8IYB4	626 aa		12.42	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	RNF10	Q8N5U6	811 aa	Known RBP	12.42	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	SPOCK2	Q92563	424 aa		12.42	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	C2orf49	Q9BVC5	232 aa	Predicted RBP	12.42	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	DNM3	Q9UQ16	869 aa		12.42	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	RABGAP1	Q9Y3P9	1069 aa		12.42	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	BRCA1	P38398	1863 aa	Known RBP	12.42	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	FER1L6	Q2WGJ9	1857 aa		12.42	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	EME2	A4GXA9	379 aa	Predicted RBP	12.42	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	TBC1D12	O60347	775 aa		12.42	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	E2F6	O75461	281 aa		12.42	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	TRIM49	P0CI25	452 aa		12.42	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	TRIM49C	P0CI26	452 aa		12.42	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	PON1	P27169	355 aa		12.42	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	ECHS1	P30084	290 aa		12.42	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	MDH1	P40925	334 aa	Known RBP	12.42	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	EXOC3L4	Q17RC7	722 aa		12.42	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	ZNF572	Q7Z3I7	529 aa	Predicted RBP	12.42	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	ARL6IP6	Q8N6S5	226 aa		12.42	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	HOOK2	Q96ED9	719 aa		12.42	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	EPN3	Q9H201	632 aa		12.42	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	TAF1D	Q9H5J8	278 aa	Predicted RBP	12.42	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	ARMCX3	Q9UH62	379 aa	Predicted RBP	12.42	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	GGT7	Q9UJ14	662 aa		12.42	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	NAGPA	Q9UK23	515 aa		12.42	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	YBX3	P16989	372 aa	Known RBP eCLIP	12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	GNAL	P38405	381 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	MAGOH	P61326	146 aa	Known RBP	12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	TNNC1	P63316	161 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	COX10	Q12887	443 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	ITGB3BP	Q13352	177 aa	Predicted RBP	12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	TTLL12	Q14166	644 aa	Predicted RBP	12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	KNOP1	Q1ED39	458 aa	Known RBP	12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	GBP6	Q6ZN66	633 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	PALB2	Q86YC2	1186 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	ATP11C	Q8NB49	1132 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	ANKRD49	Q8WVL7	239 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	MAGOHB	Q96A72	148 aa	Known RBP	12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	C1orf74	Q96LT6	269 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	KCTD5	Q9NXV2	234 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	GCNT4	Q9P109	453 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	PGAP2	Q9UHJ9	254 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	GTF3C4	Q9UKN8	822 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	PCDHGC5	Q9Y5F6	944 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	FRMD3	A2A2Y4	597 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	TMEM150B	A6NC51	233 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	GCOM1	H8Y6P7	765 aa	Predicted RBP	12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	MEFV	O15553	781 aa	Predicted RBP	12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	TGFB1I1	O43294	461 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	FGG	P02679	453 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	NR3C1	P04150	777 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	MYZAP	P0CAP1	466 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	POLR2M	P0CAP2	368 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	SLCO1A2	P46721	670 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	USP11	P51784	963 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	ZNF844	Q08AG5	666 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	KRT71	Q3SY84	523 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	NSMF	Q6X4W1	530 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	SYT2	Q8N9I0	419 aa	Predicted RBP	12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	ZSWIM2	Q8NEG5	633 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	RNF25	Q96BH1	459 aa	Predicted RBP	12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	MBOAT7	Q96N66	472 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	OSBPL10	Q9BXB5	764 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	SIX2	Q9NPC8	291 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	TAS2R14	Q9NYV8	317 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	PPP1R9A	Q9ULJ8	1098 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	IGSF9B	Q9UPX0	1349 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	CYP3A7-CYP3A51P	A0A087WV96	503 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	FOXO6	A8MYZ6	492 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	NFIB	O00712	420 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	PEX10	O60683	326 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	CTNND1	O60716	968 aa	Known RBP	12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	CYP3A7	P24462	503 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	RPA1	P27694	616 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	HAL	P42357	657 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	CYP2J2	P51589	502 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	SKOR1	P84550	965 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	ITIH3	Q06033	890 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	GNPTAB	Q3T906	1256 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	KDM7A	Q6ZMT4	941 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	GPC2	Q8N158	579 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	ANKK1	Q8NFD2	765 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	N4BP2L2	Q92802	583 aa	Predicted RBP	12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	WNK4	Q96J92	1243 aa		12.41	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	ZMYM2	Q9UBW7	1377 aa		12.4	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	ABCB11	O95342	1321 aa		12.4	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063		A6NCN8	305 aa		12.4	□□□□□ -0.42
CDK5RAP3-231	ENST00000584063	IFRD1	O00458	451 aa	Predicted RBP	12.4	□□□□□ -0.42

Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms