RNA–Protein interactions for RNA: ENST00000580391.5

CDK5RAP3-218, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 5

Gene CDK5RAP3, Length 1,957 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-218ENST00000580391 GTF2F1P35269 517 aaKnown RBP eCLIP16.02■□□□□ 0.16
CDK5RAP3-218ENST00000580391 TMEM62Q0P6H9 643 aa16.02■□□□□ 0.16
CDK5RAP3-218ENST00000580391 BIRC3Q13489 604 aa16.02■□□□□ 0.16
CDK5RAP3-218ENST00000580391 HSP90AA2PQ14568 343 aaPredicted RBP16.02■□□□□ 0.16
CDK5RAP3-218ENST00000580391 FAM187BQ17R55 369 aa16.02■□□□□ 0.16
CDK5RAP3-218ENST00000580391 THNSL1Q8IYQ7 743 aa16.02■□□□□ 0.16
CDK5RAP3-218ENST00000580391 LNX1Q8TBB1 728 aaPredicted RBP16.02■□□□□ 0.16
CDK5RAP3-218ENST00000580391 CPB2Q96IY4 423 aa16.02■□□□□ 0.16
CDK5RAP3-218ENST00000580391 PACSIN1Q9BY11 444 aa16.02■□□□□ 0.16
CDK5RAP3-218ENST00000580391 CPSF3Q9UKF6 684 aaKnown RBP16.02■□□□□ 0.16
CDK5RAP3-218ENST00000580391 TNFSF13BQ9Y275 285 aa16.02■□□□□ 0.16
CDK5RAP3-218ENST00000580391 RALGAPA2Q2PPJ7 1873 aa16.02■□□□□ 0.15
CDK5RAP3-218ENST00000580391 DDX3XO00571 662 aaKnown RBP eCLIP16.02■□□□□ 0.151e-8■■■□□ 15.4
CDK5RAP3-218ENST00000580391 VNN1O95497 513 aa16.02■□□□□ 0.15
CDK5RAP3-218ENST00000580391 PIK3CAP42336 1068 aa16.02■□□□□ 0.15
CDK5RAP3-218ENST00000580391 OSTNP61366 133 aa16.02■□□□□ 0.15
CDK5RAP3-218ENST00000580391 KIF22Q14807 665 aa16.02■□□□□ 0.15
CDK5RAP3-218ENST00000580391 MFSD14CQ5VZR4 134 aa16.02■□□□□ 0.15
CDK5RAP3-218ENST00000580391 RUFY4Q6ZNE9 571 aa16.02■□□□□ 0.15
CDK5RAP3-218ENST00000580391 DNAAF5Q86Y56 855 aa16.02■□□□□ 0.15
CDK5RAP3-218ENST00000580391 TSC1Q92574 1164 aa16.02■□□□□ 0.15
CDK5RAP3-218ENST00000580391 SECISBP2LQ93073 1101 aaKnown RBP16.02■□□□□ 0.15
CDK5RAP3-218ENST00000580391 TATDN2Q93075 761 aa16.02■□□□□ 0.15
CDK5RAP3-218ENST00000580391 SYT11Q9BT88 431 aa16.02■□□□□ 0.15
CDK5RAP3-218ENST00000580391 PDZD7Q9H5P4 517 aa16.02■□□□□ 0.15
CDK5RAP3-218ENST00000580391 SALL4Q9UJQ4 1053 aa16.02■□□□□ 0.15
CDK5RAP3-218ENST00000580391 NENFQ9UMX5 172 aa16.02■□□□□ 0.15
CDK5RAP3-218ENST00000580391 CAPN6Q9Y6Q1 641 aa16.02■□□□□ 0.15
CDK5RAP3-218ENST00000580391 THSD7BQ9C0I4 1608 aa16.02■□□□□ 0.15
CDK5RAP3-218ENST00000580391 MBLAC1A4D2B0 266 aaPredicted RBP16.01■□□□□ 0.15
CDK5RAP3-218ENST00000580391 DUSP11O75319 330 aaKnown RBP16.01■□□□□ 0.15
CDK5RAP3-218ENST00000580391 C6orf222P0C671 652 aaPredicted RBP16.01■□□□□ 0.15
CDK5RAP3-218ENST00000580391 PURAQ00577 322 aaKnown RBP16.01■□□□□ 0.15
CDK5RAP3-218ENST00000580391 KIZQ2M2Z5 673 aa16.01■□□□□ 0.15
CDK5RAP3-218ENST00000580391 TMEM192Q8IY95 271 aa16.01■□□□□ 0.15
CDK5RAP3-218ENST00000580391 FAM212AQ96EL1 285 aa16.01■□□□□ 0.15
CDK5RAP3-218ENST00000580391 NAPGQ99747 312 aaPredicted RBP16.01■□□□□ 0.15
CDK5RAP3-218ENST00000580391 CREBZFQ9NS37 354 aa16.01■□□□□ 0.15
CDK5RAP3-218ENST00000580391 NAGPAQ9UK23 515 aa16.01■□□□□ 0.15
CDK5RAP3-218ENST00000580391 GPR25O00155 361 aa16■□□□□ 0.15
CDK5RAP3-218ENST00000580391 CYP2C9P11712 490 aa16■□□□□ 0.15
CDK5RAP3-218ENST00000580391 ARF4P18085 180 aaPredicted RBP16■□□□□ 0.15
CDK5RAP3-218ENST00000580391 FGFR4P22455 802 aa16■□□□□ 0.15
CDK5RAP3-218ENST00000580391 ANXA13P27216 316 aa16■□□□□ 0.15
CDK5RAP3-218ENST00000580391 ADAM17P78536 824 aa16■□□□□ 0.15
CDK5RAP3-218ENST00000580391 ZNF200P98182 395 aaPredicted RBP16■□□□□ 0.15
CDK5RAP3-218ENST00000580391 SP3Q02447 781 aa16■□□□□ 0.15
CDK5RAP3-218ENST00000580391 BMS1Q14692 1282 aaKnown RBP16■□□□□ 0.15
CDK5RAP3-218ENST00000580391 SCARA3Q6AZY7 606 aa16■□□□□ 0.15
CDK5RAP3-218ENST00000580391 SPOPLQ6IQ16 392 aa16■□□□□ 0.15
CDK5RAP3-218ENST00000580391 ZNF410Q86VK4 478 aa16■□□□□ 0.15
CDK5RAP3-218ENST00000580391 LRRN4CLQ8ND94 238 aa16■□□□□ 0.15
CDK5RAP3-218ENST00000580391 SHC3Q92529 594 aa16■□□□□ 0.15
CDK5RAP3-218ENST00000580391 DHX38Q92620 1227 aaKnown RBP16■□□□□ 0.15
CDK5RAP3-218ENST00000580391 CTAGE9A4FU28 777 aa16■□□□□ 0.15
CDK5RAP3-218ENST00000580391 TSPAN1O60635 241 aa16■□□□□ 0.15
CDK5RAP3-218ENST00000580391 MOCS3O95396 460 aa16■□□□□ 0.15
CDK5RAP3-218ENST00000580391 USP8P40818 1118 aa16■□□□□ 0.15
CDK5RAP3-218ENST00000580391 MFAP3P55082 362 aa16■□□□□ 0.15
CDK5RAP3-218ENST00000580391 ALKBH5Q6P6C2 394 aaKnown RBP16■□□□□ 0.15
CDK5RAP3-218ENST00000580391 VPS36Q86VN1 386 aa16■□□□□ 0.15
CDK5RAP3-218ENST00000580391 WDR49Q8IV35 697 aa16■□□□□ 0.15
CDK5RAP3-218ENST00000580391 FMNL3Q8IVF7 1028 aa16■□□□□ 0.15
CDK5RAP3-218ENST00000580391 GLYCTKQ8IVS8 523 aa16■□□□□ 0.15
CDK5RAP3-218ENST00000580391 SLC20A1Q8WUM9 679 aa16■□□□□ 0.15
CDK5RAP3-218ENST00000580391 VTI1AQ96AJ9 217 aa16■□□□□ 0.15
CDK5RAP3-218ENST00000580391 ARID3AQ99856 593 aa16■□□□□ 0.15
CDK5RAP3-218ENST00000580391 MTMR12Q9C0I1 747 aa16■□□□□ 0.15
CDK5RAP3-218ENST00000580391 ADAMTS10Q9H324 1103 aa16■□□□□ 0.15
CDK5RAP3-218ENST00000580391 LUC7LQ9NQ29 371 aaKnown RBP16■□□□□ 0.15
CDK5RAP3-218ENST00000580391 C1orf112Q9NSG2 853 aa16■□□□□ 0.15
CDK5RAP3-218ENST00000580391 GINS2Q9Y248 185 aa16■□□□□ 0.15
CDK5RAP3-218ENST00000580391 MRFAP1Q9Y605 127 aa16■□□□□ 0.15
CDK5RAP3-218ENST00000580391 SMIM35A0A1B0GVV1 85 aa15.99■□□□□ 0.15
CDK5RAP3-218ENST00000580391 TREHO43280 583 aa15.99■□□□□ 0.15
CDK5RAP3-218ENST00000580391 ZC3H11AO75152 810 aaKnown RBP eCLIP15.99■□□□□ 0.156e-7■■■□□ 17.4
CDK5RAP3-218ENST00000580391 PGK1P00558 417 aa15.99■□□□□ 0.15
CDK5RAP3-218ENST00000580391 CCDC172P0C7W6 258 aa15.99■□□□□ 0.15
CDK5RAP3-218ENST00000580391 CXCL8P10145 99 aa15.99■□□□□ 0.15
CDK5RAP3-218ENST00000580391 PALB2Q86YC2 1186 aa15.99■□□□□ 0.15
CDK5RAP3-218ENST00000580391 EFCAB13Q8IY85 973 aa15.99■□□□□ 0.15
CDK5RAP3-218ENST00000580391 U2AF1L4Q8WU68 220 aaKnown RBP15.99■□□□□ 0.15
CDK5RAP3-218ENST00000580391 KATNAL1Q9BW62 490 aa15.99■□□□□ 0.15
CDK5RAP3-218ENST00000580391 RNF186Q9NXI6 227 aa15.99■□□□□ 0.15
CDK5RAP3-218ENST00000580391 FAM170AA1A519 330 aa15.98■□□□□ 0.15
CDK5RAP3-218ENST00000580391 ENC1O14682 589 aa15.98■□□□□ 0.15
CDK5RAP3-218ENST00000580391 CTIFO43310 598 aaKnown RBP15.98■□□□□ 0.15
CDK5RAP3-218ENST00000580391 GPR32O75388 356 aa15.98■□□□□ 0.15
CDK5RAP3-218ENST00000580391 ERLIN2O94905 339 aa15.98■□□□□ 0.15
CDK5RAP3-218ENST00000580391 SLU7O95391 586 aaKnown RBP15.98■□□□□ 0.15
CDK5RAP3-218ENST00000580391 ELNP15502 786 aa15.98■□□□□ 0.15
CDK5RAP3-218ENST00000580391 GJA9P57773 515 aa15.98■□□□□ 0.15
CDK5RAP3-218ENST00000580391 CACNB2Q08289 660 aaPredicted RBP15.98■□□□□ 0.15
CDK5RAP3-218ENST00000580391 NAB2Q15742 525 aa15.98■□□□□ 0.15
CDK5RAP3-218ENST00000580391 SRGAP1Q7Z6B7 1085 aa15.98■□□□□ 0.15
CDK5RAP3-218ENST00000580391 FAM71AQ8IYT1 594 aa15.98■□□□□ 0.15
CDK5RAP3-218ENST00000580391 TXLNBQ8N3L3 684 aa15.98■□□□□ 0.15
CDK5RAP3-218ENST00000580391 SLC30A5Q8TAD4 765 aa15.98■□□□□ 0.15
CDK5RAP3-218ENST00000580391 DNAJB3Q8WWF6 145 aa15.98■□□□□ 0.15
CDK5RAP3-218ENST00000580391 OSMRQ99650 979 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms