RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 TNNI1P19237 187 aa27.22■■□□□ 1.95
SHMT1-207ENST00000580002 PON1P27169 355 aa27.22■■□□□ 1.95
SHMT1-207ENST00000580002 CLDN10P78369 228 aa27.22■■□□□ 1.95
SHMT1-207ENST00000580002 MYL7Q01449 175 aa27.22■■□□□ 1.95
SHMT1-207ENST00000580002 CAGE1Q8TC20 777 aa27.22■■□□□ 1.95
SHMT1-207ENST00000580002 FNBP1Q96RU3 617 aa27.22■■□□□ 1.95
SHMT1-207ENST00000580002 ITIH6Q6UXX5 1313 aa27.21■■□□□ 1.95
SHMT1-207ENST00000580002 MEIS3P2A8K0S8 358 aa27.21■■□□□ 1.95
SHMT1-207ENST00000580002 CASP14P31944 242 aa27.21■■□□□ 1.95
SHMT1-207ENST00000580002 GRM5P41594 1212 aa27.21■■□□□ 1.95
SHMT1-207ENST00000580002 CCL23P55773 120 aa27.21■■□□□ 1.95
SHMT1-207ENST00000580002 DCAF4L1Q3SXM0 396 aa27.21■■□□□ 1.95
SHMT1-207ENST00000580002 GJB7Q6PEY0 223 aa27.21■■□□□ 1.95
SHMT1-207ENST00000580002 LMO3Q8TAP4 145 aa27.21■■□□□ 1.95
SHMT1-207ENST00000580002 SIX2Q9NPC8 291 aa27.21■■□□□ 1.95
SHMT1-207ENST00000580002 TTC26A0AVF1 554 aa27.2■■□□□ 1.95
SHMT1-207ENST00000580002 DCDC2CA8MYV0 355 aa27.2■■□□□ 1.95
SHMT1-207ENST00000580002 C4BPAP04003 597 aaKnown RBP27.2■■□□□ 1.95
SHMT1-207ENST00000580002 IBSPP21815 317 aaPredicted RBP27.2■■□□□ 1.95
SHMT1-207ENST00000580002 EXOC3L4Q17RC7 722 aa27.2■■□□□ 1.95
SHMT1-207ENST00000580002 TCTN1Q2MV58 587 aa27.2■■□□□ 1.95
SHMT1-207ENST00000580002 RTN4RL1Q86UN2 441 aaPredicted RBP27.2■■□□□ 1.95
SHMT1-207ENST00000580002 GPIHBP1Q8IV16 184 aa27.2■■□□□ 1.95
SHMT1-207ENST00000580002 TAS1R2Q8TE23 839 aa27.2■■□□□ 1.95
SHMT1-207ENST00000580002 ACAP3Q96P50 834 aa27.2■■□□□ 1.95
SHMT1-207ENST00000580002 CGRRF1Q99675 332 aa27.2■■□□□ 1.95
SHMT1-207ENST00000580002 TTYH3Q9C0H2 523 aa27.2■■□□□ 1.95
SHMT1-207ENST00000580002 KLK14Q9P0G3 267 aa27.2■■□□□ 1.95
SHMT1-207ENST00000580002 GCNT4Q9P109 453 aa27.2■■□□□ 1.95
SHMT1-207ENST00000580002 AJAP1Q9UKB5 411 aaPredicted RBP27.2■■□□□ 1.95
SHMT1-207ENST00000580002 IPPQ9Y573 584 aa27.2■■□□□ 1.95
SHMT1-207ENST00000580002 MROH7Q68CQ1 1323 aa27.2■■□□□ 1.94
SHMT1-207ENST00000580002 TLR3O15455 904 aaKnown RBP27.2■■□□□ 1.94
SHMT1-207ENST00000580002 CYP2C18P33260 490 aa27.2■■□□□ 1.94
SHMT1-207ENST00000580002 MXI1P50539 228 aa27.2■■□□□ 1.94
SHMT1-207ENST00000580002 DSC3Q14574 896 aa27.2■■□□□ 1.94
SHMT1-207ENST00000580002 C1orf53Q5VUE5 145 aa27.2■■□□□ 1.94
SHMT1-207ENST00000580002 TDRD10Q5VZ19 366 aaKnown RBP27.2■■□□□ 1.94
SHMT1-207ENST00000580002 TOX2Q96NM4 488 aa27.2■■□□□ 1.94
SHMT1-207ENST00000580002 TRIM6Q9C030 488 aaPredicted RBP27.2■■□□□ 1.94
SHMT1-207ENST00000580002 WNT8AQ9H1J5 351 aa27.2■■□□□ 1.94
SHMT1-207ENST00000580002 NFICP08651 508 aa27.19■■□□□ 1.94
SHMT1-207ENST00000580002 BFSP2Q13515 415 aa27.19■■□□□ 1.94
SHMT1-207ENST00000580002 EPC2Q52LR7 807 aa27.19■■□□□ 1.94
SHMT1-207ENST00000580002 JADE1Q6IE81 842 aa27.19■■□□□ 1.94
SHMT1-207ENST00000580002 GBP6Q6ZN66 633 aa27.19■■□□□ 1.94
SHMT1-207ENST00000580002 C15orf39Q6ZRI6 1047 aa27.19■■□□□ 1.94
SHMT1-207ENST00000580002 CACTINQ8WUQ7 758 aaKnown RBP27.19■■□□□ 1.94
SHMT1-207ENST00000580002 HIPK3Q9H422 1215 aa27.19■■□□□ 1.94
SHMT1-207ENST00000580002 TMEM8AQ9HCN3 771 aa27.19■■□□□ 1.94
SHMT1-207ENST00000580002 VNN1O95497 513 aa27.18■■□□□ 1.94
SHMT1-207ENST00000580002 LRMPQ12912 555 aa27.18■■□□□ 1.94
SHMT1-207ENST00000580002 NECAB2Q7Z6G3 386 aa27.18■■□□□ 1.94
SHMT1-207ENST00000580002 LPPQ93052 612 aa27.18■■□□□ 1.94
SHMT1-207ENST00000580002 MTMR12Q9C0I1 747 aa27.18■■□□□ 1.94
SHMT1-207ENST00000580002 INTS2Q9H0H0 1204 aaKnown RBP27.18■■□□□ 1.94
SHMT1-207ENST00000580002 IMPACTQ9P2X3 320 aa27.18■■□□□ 1.94
SHMT1-207ENST00000580002 PCDHB2Q9Y5E7 798 aa27.18■■□□□ 1.94
SHMT1-207ENST00000580002 RECQL4O94761 1208 aa27.17■■□□□ 1.94
SHMT1-207ENST00000580002 GUCY2FP51841 1108 aa27.17■■□□□ 1.94
SHMT1-207ENST00000580002 KRT39Q6A163 491 aa27.17■■□□□ 1.94
SHMT1-207ENST00000580002 TC2NQ8N9U0 490 aa27.17■■□□□ 1.94
SHMT1-207ENST00000580002 EHBP1Q8NDI1 1231 aa27.17■■□□□ 1.94
SHMT1-207ENST00000580002 ZMAT2Q96NC0 199 aaKnown RBP27.17■■□□□ 1.94
SHMT1-207ENST00000580002 ADAM2Q99965 735 aa27.17■■□□□ 1.94
SHMT1-207ENST00000580002 PI4K2AQ9BTU6 479 aa27.17■■□□□ 1.94
SHMT1-207ENST00000580002 CCDC94Q9BW85 323 aaPredicted RBP27.17■■□□□ 1.94
SHMT1-207ENST00000580002 GANQ9H2C0 597 aa27.17■■□□□ 1.94
SHMT1-207ENST00000580002 KCNF1Q9H3M0 494 aa27.17■■□□□ 1.94
SHMT1-207ENST00000580002 TRIM21P19474 475 aaKnown RBP27.17■■□□□ 1.94
SHMT1-207ENST00000580002 TFAMQ00059 246 aaKnown RBP27.17■■□□□ 1.94
SHMT1-207ENST00000580002 PPFIBP1Q86W92 1011 aa27.17■■□□□ 1.94
SHMT1-207ENST00000580002 LINC01599Q8WXQ3 324 aa27.17■■□□□ 1.94
SHMT1-207ENST00000580002 IFIH1Q9BYX4 1025 aaKnown RBP27.17■■□□□ 1.94
SHMT1-207ENST00000580002 CHST12Q9NRB3 414 aa27.17■■□□□ 1.94
SHMT1-207ENST00000580002 FAM105AQ9NUU6 356 aa27.17■■□□□ 1.94
SHMT1-207ENST00000580002 PARP2Q9UGN5 583 aa27.17■■□□□ 1.94
SHMT1-207ENST00000580002 TBX21Q9UL17 535 aa27.17■■□□□ 1.94
SHMT1-207ENST00000580002 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP27.17■■□□□ 1.94
SHMT1-207ENST00000580002 ANK1P16157 1881 aa27.16■■□□□ 1.94
SHMT1-207ENST00000580002 GTPBP10A4D1E9 387 aaKnown RBP27.16■■□□□ 1.94
SHMT1-207ENST00000580002 CST3P01034 146 aaPredicted RBP27.16■■□□□ 1.94
SHMT1-207ENST00000580002 ITGB8P26012 769 aa27.16■■□□□ 1.94
SHMT1-207ENST00000580002 ZACNQ401N2 412 aa27.16■■□□□ 1.94
SHMT1-207ENST00000580002 TRIM65Q6PJ69 517 aa27.16■■□□□ 1.94
SHMT1-207ENST00000580002 NLRC4Q9NPP4 1024 aa27.16■■□□□ 1.94
SHMT1-207ENST00000580002 SQORQ9Y6N5 450 aa27.16■■□□□ 1.94
SHMT1-207ENST00000580002 PITPNM1O00562 1244 aa27.15■■□□□ 1.94
SHMT1-207ENST00000580002 ZSCAN20P17040 1043 aaPredicted RBP27.15■■□□□ 1.94
SHMT1-207ENST00000580002 GTF2H1P32780 548 aa27.15■■□□□ 1.94
SHMT1-207ENST00000580002 AFF1P51825 1210 aaKnown RBP27.15■■□□□ 1.94
SHMT1-207ENST00000580002 GLRA4Q5JXX5 417 aa27.15■■□□□ 1.94
SHMT1-207ENST00000580002 KLHDC7AQ5VTJ3 777 aa27.15■■□□□ 1.94
SHMT1-207ENST00000580002 UBE2Q1Q7Z7E8 422 aa27.15■■□□□ 1.94
SHMT1-207ENST00000580002 TET1Q8NFU7 2136 aa27.15■■□□□ 1.94
SHMT1-207ENST00000580002 NEK11Q8NG66 645 aa27.15■■□□□ 1.94
SHMT1-207ENST00000580002 CCDC51Q96ER9 411 aa27.15■■□□□ 1.94
SHMT1-207ENST00000580002 TMEM39AQ9NV64 488 aa27.15■■□□□ 1.94
SHMT1-207ENST00000580002 FHOD1Q9Y613 1164 aa27.15■■□□□ 1.94
SHMT1-207ENST00000580002 POLR2FP61218 127 aaKnown RBP27.14■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms