RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 TMEM199Q8N511 208 aa11.65□□□□□ -0.55
SS18-213ENST00000579640 SMG8Q8ND04 991 aaKnown RBP11.65□□□□□ -0.55
SS18-213ENST00000579640 DBF4BQ8NFT6 615 aa11.65□□□□□ -0.55
SS18-213ENST00000579640 PLEKHO2Q8TD55 490 aa11.65□□□□□ -0.55
SS18-213ENST00000579640 TRIM43Q96BQ3 446 aaPredicted RBP11.65□□□□□ -0.55
SS18-213ENST00000579640 TSPYL2Q9H2G4 693 aaPredicted RBP11.65□□□□□ -0.55
SS18-213ENST00000579640 NXF3Q9H4D5 531 aaKnown RBP11.65□□□□□ -0.55
SS18-213ENST00000579640 UBN1Q9NPG3 1134 aa11.65□□□□□ -0.55
SS18-213ENST00000579640 RNF216Q9NWF9 866 aaPredicted RBP11.65□□□□□ -0.55
SS18-213ENST00000579640 SNTG2Q9NY99 539 aa11.65□□□□□ -0.55
SS18-213ENST00000579640 RALGAPA2Q2PPJ7 1873 aa11.64□□□□□ -0.55
SS18-213ENST00000579640 A0A1W2PQC6 194 aa11.64□□□□□ -0.55
SS18-213ENST00000579640 TTC26A0AVF1 554 aa11.64□□□□□ -0.55
SS18-213ENST00000579640 CITO14578 2027 aa11.64□□□□□ -0.55
SS18-213ENST00000579640 TRIM49P0CI25 452 aa11.64□□□□□ -0.55
SS18-213ENST00000579640 TRIM49CP0CI26 452 aa11.64□□□□□ -0.55
SS18-213ENST00000579640 DLATP10515 647 aaKnown RBP11.64□□□□□ -0.55
SS18-213ENST00000579640 ITGA4P13612 1032 aa11.64□□□□□ -0.55
SS18-213ENST00000579640 TNNI1P19237 187 aa11.64□□□□□ -0.55
SS18-213ENST00000579640 CDC25BP30305 580 aa11.64□□□□□ -0.55
SS18-213ENST00000579640 FMO5P49326 533 aa11.64□□□□□ -0.55
SS18-213ENST00000579640 DLG4P78352 724 aa11.64□□□□□ -0.55
SS18-213ENST00000579640 SLC10A6Q3KNW5 377 aa11.64□□□□□ -0.55
SS18-213ENST00000579640 C1orf220Q5T0J3 134 aa11.64□□□□□ -0.55
SS18-213ENST00000579640 CNKSR3Q6P9H4 555 aa11.64□□□□□ -0.55
SS18-213ENST00000579640 SLC24A5Q71RS6 500 aa11.64□□□□□ -0.55
SS18-213ENST00000579640 TMEM192Q8IY95 271 aa11.64□□□□□ -0.55
SS18-213ENST00000579640 RPUSD2Q8IZ73 545 aaKnown RBP11.64□□□□□ -0.55
SS18-213ENST00000579640 SNX27Q96L92 541 aa11.64□□□□□ -0.55
SS18-213ENST00000579640 ERGIC2Q96RQ1 377 aa11.64□□□□□ -0.55
SS18-213ENST00000579640 TMEM8AQ9HCN3 771 aa11.64□□□□□ -0.55
SS18-213ENST00000579640 PDE11AQ9HCR9 933 aa11.64□□□□□ -0.55
SS18-213ENST00000579640 INTS13Q9NVM9 706 aa11.64□□□□□ -0.55
SS18-213ENST00000579640 GIT1Q9Y2X7 761 aa11.64□□□□□ -0.55
SS18-213ENST00000579640 DERAQ9Y315 318 aa11.64□□□□□ -0.55
SS18-213ENST00000579640 C2CD2Q9Y426 696 aa11.64□□□□□ -0.55
SS18-213ENST00000579640 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.64□□□□□ -0.55
SS18-213ENST00000579640 ALPK3Q96L96 1907 aa11.64□□□□□ -0.55
SS18-213ENST00000579640 BRCA2P51587 3418 aa11.64□□□□□ -0.55
SS18-213ENST00000579640 LACTBL1A8MY62 500 aa11.63□□□□□ -0.55
SS18-213ENST00000579640 C9IYK1 514 aa11.63□□□□□ -0.55
SS18-213ENST00000579640 RECQL4O94761 1208 aa11.63□□□□□ -0.55
SS18-213ENST00000579640 EOMESO95936 686 aa11.63□□□□□ -0.55
SS18-213ENST00000579640 MXI1P50539 228 aa11.63□□□□□ -0.55
SS18-213ENST00000579640 FAM189BP81408 668 aa11.63□□□□□ -0.55
SS18-213ENST00000579640 DUOXA2Q1HG44 320 aa11.63□□□□□ -0.55
SS18-213ENST00000579640 KRT39Q6A163 491 aa11.63□□□□□ -0.55
SS18-213ENST00000579640 ECHDC2Q86YB7 292 aa11.63□□□□□ -0.55
SS18-213ENST00000579640 CACTINQ8WUQ7 758 aaKnown RBP11.63□□□□□ -0.55
SS18-213ENST00000579640 FAM212AQ96EL1 285 aa11.63□□□□□ -0.55
SS18-213ENST00000579640 ELAC1Q9H777 363 aaKnown RBP11.63□□□□□ -0.55
SS18-213ENST00000579640 PARP2Q9UGN5 583 aa11.63□□□□□ -0.55
SS18-213ENST00000579640 HES2Q9Y543 173 aa11.63□□□□□ -0.55
SS18-213ENST00000579640 SCN5AQ14524 2016 aa11.63□□□□□ -0.55
SS18-213ENST00000579640 ANK1P16157 1881 aa11.63□□□□□ -0.55
SS18-213ENST00000579640 CCDC85CA6NKD9 419 aa11.63□□□□□ -0.55
SS18-213ENST00000579640 TEX33O43247 280 aa11.63□□□□□ -0.55
SS18-213ENST00000579640 GCLMP48507 274 aa11.63□□□□□ -0.55
SS18-213ENST00000579640 MYL7Q01449 175 aa11.63□□□□□ -0.55
SS18-213ENST00000579640 PPP3CAQ08209 521 aa11.63□□□□□ -0.55
SS18-213ENST00000579640 XKR4Q5GH76 650 aa11.63□□□□□ -0.55
SS18-213ENST00000579640 ALKAL1Q6UXT8 129 aa11.63□□□□□ -0.55
SS18-213ENST00000579640 GBP6Q6ZN66 633 aa11.63□□□□□ -0.55
SS18-213ENST00000579640 DEFB128Q7Z7B8 93 aa11.63□□□□□ -0.55
SS18-213ENST00000579640 RTN4RL1Q86UN2 441 aaPredicted RBP11.63□□□□□ -0.55
SS18-213ENST00000579640 LINC01599Q8WXQ3 324 aa11.63□□□□□ -0.55
SS18-213ENST00000579640 ANKRD36BP1Q96IX9 119 aa11.63□□□□□ -0.55
SS18-213ENST00000579640 APOL6Q9BWW8 343 aa11.63□□□□□ -0.55
SS18-213ENST00000579640 TMEM117Q9H0C3 514 aa11.63□□□□□ -0.55
SS18-213ENST00000579640 CNTN3Q9P232 1028 aa11.63□□□□□ -0.55
SS18-213ENST00000579640 ITIH6Q6UXX5 1313 aa11.62□□□□□ -0.55
SS18-213ENST00000579640 ENPP3O14638 875 aa11.62□□□□□ -0.55
SS18-213ENST00000579640 XPOTO43592 962 aaKnown RBP11.62□□□□□ -0.55
SS18-213ENST00000579640 EFCAB14O75071 495 aa11.62□□□□□ -0.55
SS18-213ENST00000579640 TNNC2P02585 160 aa11.62□□□□□ -0.55
SS18-213ENST00000579640 TMEM191BP0C7N4 346 aa11.62□□□□□ -0.55
SS18-213ENST00000579640 KCNE1P15382 129 aa11.62□□□□□ -0.55
SS18-213ENST00000579640 AKAP5P24588 427 aa11.62□□□□□ -0.55
SS18-213ENST00000579640 PBX1P40424 430 aa11.62□□□□□ -0.55
SS18-213ENST00000579640 WNT7BP56706 349 aa11.62□□□□□ -0.55
SS18-213ENST00000579640 PPIGQ13427 754 aaKnown RBP eCLIP11.62□□□□□ -0.552e-6■■■■□ 23.1
SS18-213ENST00000579640 IKBKEQ14164 716 aa11.62□□□□□ -0.55
SS18-213ENST00000579640 TMEM132DQ14C87 1099 aa11.62□□□□□ -0.55
SS18-213ENST00000579640 ZACNQ401N2 412 aa11.62□□□□□ -0.55
SS18-213ENST00000579640 CBWD6Q4V339 395 aa11.62□□□□□ -0.55
SS18-213ENST00000579640 CBWD3Q5JTY5 395 aa11.62□□□□□ -0.55
SS18-213ENST00000579640 CBWD5Q5RIA9 395 aa11.62□□□□□ -0.55
SS18-213ENST00000579640 C15orf39Q6ZRI6 1047 aa11.62□□□□□ -0.55
SS18-213ENST00000579640 SV2AQ7L0J3 742 aa11.62□□□□□ -0.55
SS18-213ENST00000579640 ZNF598Q86UK7 904 aaKnown RBP11.62□□□□□ -0.55
SS18-213ENST00000579640 VSTM4Q8IW00 320 aa11.62□□□□□ -0.55
SS18-213ENST00000579640 C7orf61Q8IZ16 206 aa11.62□□□□□ -0.55
SS18-213ENST00000579640 RSPH1Q8WYR4 309 aa11.62□□□□□ -0.55
SS18-213ENST00000579640 IQCDQ96DY2 449 aa11.62□□□□□ -0.55
SS18-213ENST00000579640 POP1Q99575 1024 aaKnown RBP11.62□□□□□ -0.55
SS18-213ENST00000579640 RNF39Q9H2S5 420 aa11.62□□□□□ -0.55
SS18-213ENST00000579640 MMRN2Q9H8L6 949 aa11.62□□□□□ -0.55
SS18-213ENST00000579640 TMEM161AQ9NX61 479 aa11.62□□□□□ -0.55
SS18-213ENST00000579640 COQ4Q9Y3A0 265 aa11.62□□□□□ -0.55
SS18-213ENST00000579640 ABHD14A-ACY1A0A1B0GW23 586 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms