RNA–Protein interactions for RNA: ENST00000578329.1

PPP4R1-209, Transcript of protein phosphatase 4 regulatory subunit 1, human

TSL 3

Gene PPP4R1, Length 350 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPP4R1-209	ENST00000578329	OR52Z1	P0C646	297 aa		4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	LAMP2	P13473	410 aa		4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	TKT	P29401	623 aa	Known RBP	4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	NPTX2	P47972	431 aa		4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	RBM25	P49756	843 aa	Known RBP	4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	CLCN5	P51795	746 aa		4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	CLCNKB	P51801	687 aa		4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	PTPN5	P54829	565 aa		4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	WNT7B	P56706	349 aa		4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	GRIK3	Q13003	919 aa		4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	PTGDR	Q13258	359 aa		4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	TUSC3	Q13454	348 aa		4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	TDG	Q13569	410 aa		4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	GIT2	Q14161	759 aa		4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	PCBP1	Q15365	356 aa	Known RBP eCLIP	4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	ZBTB6	Q15916	424 aa		4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	UPP1	Q16831	310 aa		4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	SLC10A6	Q3KNW5	377 aa		4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	SEZ6	Q53EL9	994 aa		4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	PRSS36	Q5K4E3	855 aa		4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	TTC38	Q5R3I4	469 aa		4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	HYI	Q5T013	277 aa		4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	CES5A	Q6NT32	575 aa		4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	RINT1	Q6NUQ1	792 aa		4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	CPLX2	Q6PUV4	134 aa	Known RBP	4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	OTUD6A	Q7L8S5	288 aa		4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	GRASP	Q7Z6J2	395 aa	Predicted RBP	4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	FRMD5	Q7Z6J6	570 aa		4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	CCDC105	Q8IYK2	499 aa		4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	TDRD5	Q8NAT2	981 aa	Known RBP	4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	CNNM3	Q8NE01	707 aa		4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	URGCP	Q8TCY9	931 aa		4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	GPR152	Q8TDT2	470 aa		4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	RIN2	Q8WYP3	895 aa	Predicted RBP	4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	RSPH1	Q8WYR4	309 aa		4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	SMG7	Q92540	1137 aa	Known RBP	4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	TCEAL4	Q96EI5	215 aa		4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	FAM84A	Q96KN4	292 aa		4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	ZSWIM3	Q96MP5	696 aa		4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	LRRC3B	Q96PB8	259 aa		4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	ACO2	Q99798	780 aa	Known RBP	4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	JPH2	Q9BR39	696 aa	Predicted RBP	4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	DDX23	Q9BUQ8	820 aa	Known RBP	4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	TARS2	Q9BW92	718 aa	Known RBP	4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	LRRC3	Q9BY71	257 aa		4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	FOXQ1	Q9C009	403 aa		4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	BHMT2	Q9H2M3	363 aa		4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	FOXP1	Q9H334	677 aa	Predicted RBP	4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	MRPL17	Q9NRX2	175 aa	Known RBP	4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	BLOC1S4	Q9NUP1	217 aa		4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	RNF216	Q9NWF9	866 aa	Predicted RBP	4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	KANSL3	Q9P2N6	904 aa		4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	DNMT3B	Q9UBC3	853 aa	Known RBP	4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	MTRR	Q9UBK8	725 aa		4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	TCEAL9	Q9UHQ7	104 aa		4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	LIMCH1	Q9UPQ0	1083 aa		4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	NUMBL	Q9Y6R0	609 aa		4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	TSC2	P49815	1807 aa		4.92	□□□□□ -1.62
PPP4R1-209	ENST00000578329	SCN1A	P35498	2009 aa		4.91	□□□□□ -1.62
PPP4R1-209	ENST00000578329	WDR27	A2RRH5	827 aa		4.91	□□□□□ -1.62
PPP4R1-209	ENST00000578329	TISP43	B9A030	160 aa		4.91	□□□□□ -1.62
PPP4R1-209	ENST00000578329	ARNTL	O00327	626 aa		4.91	□□□□□ -1.62
PPP4R1-209	ENST00000578329	SPTLC1	O15269	473 aa		4.91	□□□□□ -1.62
PPP4R1-209	ENST00000578329	GFRA3	O60609	400 aa		4.91	□□□□□ -1.62
PPP4R1-209	ENST00000578329	DKC1	O60832	514 aa	Known RBP eCLIP	4.91	□□□□□ -1.62
PPP4R1-209	ENST00000578329	HIP1R	O75146	1068 aa		4.91	□□□□□ -1.62
PPP4R1-209	ENST00000578329	ERLIN2	O94905	339 aa		4.91	□□□□□ -1.62
PPP4R1-209	ENST00000578329	ABLIM3	O94929	683 aa		4.91	□□□□□ -1.62
PPP4R1-209	ENST00000578329	GLUD1	P00367	558 aa		4.91	□□□□□ -1.62
PPP4R1-209	ENST00000578329	C1R	P00736	705 aa		4.91	□□□□□ -1.62
PPP4R1-209	ENST00000578329	UROD	P06132	367 aa		4.91	□□□□□ -1.62
PPP4R1-209	ENST00000578329	ADRB2	P07550	413 aa		4.91	□□□□□ -1.62
PPP4R1-209	ENST00000578329	CFH	P08603	1231 aa		4.91	□□□□□ -1.62
PPP4R1-209	ENST00000578329	TDGF1	P13385	188 aa		4.91	□□□□□ -1.62
PPP4R1-209	ENST00000578329	TGM1	P22735	817 aa		4.91	□□□□□ -1.62
PPP4R1-209	ENST00000578329	OR1D2	P34982	312 aa		4.91	□□□□□ -1.62
PPP4R1-209	ENST00000578329	TNFSF9	P41273	254 aa		4.91	□□□□□ -1.62
PPP4R1-209	ENST00000578329	NAMPT	P43490	491 aa		4.91	□□□□□ -1.62
PPP4R1-209	ENST00000578329	GUCY2F	P51841	1108 aa		4.91	□□□□□ -1.62
PPP4R1-209	ENST00000578329	SLC12A3	P55017	1021 aa		4.91	□□□□□ -1.62
PPP4R1-209	ENST00000578329	GPC5	P78333	572 aa		4.91	□□□□□ -1.62
PPP4R1-209	ENST00000578329	PRPF4B	Q13523	1007 aa	Known RBP	4.91	□□□□□ -1.62
PPP4R1-209	ENST00000578329	RAB33A	Q14088	237 aa		4.91	□□□□□ -1.62
PPP4R1-209	ENST00000578329	ANKRD1	Q15327	319 aa		4.91	□□□□□ -1.62
PPP4R1-209	ENST00000578329	USP41	Q3LFD5	358 aa		4.91	□□□□□ -1.62
PPP4R1-209	ENST00000578329	TMEM119	Q4V9L6	283 aa		4.91	□□□□□ -1.62
PPP4R1-209	ENST00000578329	FAM171A1	Q5VUB5	890 aa		4.91	□□□□□ -1.62
PPP4R1-209	ENST00000578329	CCDC149	Q6ZUS6	474 aa		4.91	□□□□□ -1.62
PPP4R1-209	ENST00000578329	USP49	Q70CQ1	688 aa		4.91	□□□□□ -1.62
PPP4R1-209	ENST00000578329	PPFIBP1	Q86W92	1011 aa		4.91	□□□□□ -1.62
PPP4R1-209	ENST00000578329	SUGP1	Q8IWZ8	645 aa	Known RBP	4.91	□□□□□ -1.62
PPP4R1-209	ENST00000578329	NPAS3	Q8IXF0	933 aa		4.91	□□□□□ -1.62
PPP4R1-209	ENST00000578329	SIX5	Q8N196	739 aa		4.91	□□□□□ -1.62
PPP4R1-209	ENST00000578329	TTC9B	Q8N6N2	239 aa		4.91	□□□□□ -1.62
PPP4R1-209	ENST00000578329	DTWD2	Q8NBA8	298 aa		4.91	□□□□□ -1.62
PPP4R1-209	ENST00000578329	TMEM161B	Q8NDZ6	487 aa		4.91	□□□□□ -1.62
PPP4R1-209	ENST00000578329	ZSWIM2	Q8NEG5	633 aa		4.91	□□□□□ -1.62
PPP4R1-209	ENST00000578329	HDAC7	Q8WUI4	952 aa		4.91	□□□□□ -1.62
PPP4R1-209	ENST00000578329	NELL1	Q92832	810 aa		4.91	□□□□□ -1.62
PPP4R1-209	ENST00000578329	FGF13	Q92913	245 aa		4.91	□□□□□ -1.62

Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms