RNA–Protein interactions for RNA: ENST00000574428.5

ATPAF1-213, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 1 (best) BASIC

Gene ATPAF1, Length 1,760 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-213ENST00000574428 PCDHB2Q9Y5E7 798 aa26.06■■□□□ 1.76
ATPAF1-213ENST00000574428 A0A1W2PQC6 194 aa26.05■■□□□ 1.76
ATPAF1-213ENST00000574428 STX10O60499 249 aa26.05■■□□□ 1.76
ATPAF1-213ENST00000574428 AKAP5P24588 427 aa26.05■■□□□ 1.76
ATPAF1-213ENST00000574428 CLDN10P78369 228 aa26.05■■□□□ 1.76
ATPAF1-213ENST00000574428 ZNF516Q92618 1163 aa26.05■■□□□ 1.76
ATPAF1-213ENST00000574428 PCMTD1Q96MG8 357 aaPredicted RBP26.05■■□□□ 1.76
ATPAF1-213ENST00000574428 ADAM2Q99965 735 aa26.05■■□□□ 1.76
ATPAF1-213ENST00000574428 TMEM117Q9H0C3 514 aa26.05■■□□□ 1.76
ATPAF1-213ENST00000574428 FAM105AQ9NUU6 356 aa26.05■■□□□ 1.76
ATPAF1-213ENST00000574428 SIK3Q9Y2K2 1263 aa26.05■■□□□ 1.76
ATPAF1-213ENST00000574428 MKI67P46013 3256 aaKnown RBP26.05■■□□□ 1.76
ATPAF1-213ENST00000574428 LACTBL1A8MY62 500 aa26.05■■□□□ 1.76
ATPAF1-213ENST00000574428 IL18RAPO95256 599 aa26.05■■□□□ 1.76
ATPAF1-213ENST00000574428 MXI1P50539 228 aa26.05■■□□□ 1.76
ATPAF1-213ENST00000574428 KCNMA1Q12791 1236 aa26.05■■□□□ 1.76
ATPAF1-213ENST00000574428 HS1BP3Q53T59 392 aa26.05■■□□□ 1.76
ATPAF1-213ENST00000574428 RNF39Q9H2S5 420 aa26.05■■□□□ 1.76
ATPAF1-213ENST00000574428 PRDM5Q9NQX1 630 aaPredicted RBP26.05■■□□□ 1.76
ATPAF1-213ENST00000574428 ANK1P16157 1881 aa26.04■■□□□ 1.76
ATPAF1-213ENST00000574428 RECQL4O94761 1208 aa26.04■■□□□ 1.76
ATPAF1-213ENST00000574428 TMEM8AQ9HCN3 771 aa26.04■■□□□ 1.76
ATPAF1-213ENST00000574428 GCNT4Q9P109 453 aa26.04■■□□□ 1.76
ATPAF1-213ENST00000574428 TTC26A0AVF1 554 aa26.03■■□□□ 1.76
ATPAF1-213ENST00000574428 SURF1Q15526 300 aa26.03■■□□□ 1.76
ATPAF1-213ENST00000574428 OR5B17Q8NGF7 314 aa26.03■■□□□ 1.76
ATPAF1-213ENST00000574428 CXCL16Q9H2A7 254 aa26.03■■□□□ 1.76
ATPAF1-213ENST00000574428 SCN5AQ14524 2016 aa26.03■■□□□ 1.76
ATPAF1-213ENST00000574428 N4BP1O75113 896 aaKnown RBP26.02■■□□□ 1.76
ATPAF1-213ENST00000574428 NFICP08651 508 aa26.02■■□□□ 1.76
ATPAF1-213ENST00000574428 IBSPP21815 317 aaPredicted RBP26.02■■□□□ 1.76
ATPAF1-213ENST00000574428 GTF2H1P32780 548 aa26.02■■□□□ 1.76
ATPAF1-213ENST00000574428 YARSP54577 528 aaKnown RBP26.02■■□□□ 1.76
ATPAF1-213ENST00000574428 POU5F1Q01860 360 aaKnown RBP26.02■■□□□ 1.76
ATPAF1-213ENST00000574428 PLEKHG4Q58EX7 1191 aa26.02■■□□□ 1.76
ATPAF1-213ENST00000574428 GBP6Q6ZN66 633 aa26.02■■□□□ 1.76
ATPAF1-213ENST00000574428 SV2AQ7L0J3 742 aa26.02■■□□□ 1.76
ATPAF1-213ENST00000574428 WDR49Q8IV35 697 aa26.02■■□□□ 1.76
ATPAF1-213ENST00000574428 EFCAB13Q8IY85 973 aa26.02■■□□□ 1.76
ATPAF1-213ENST00000574428 SNX27Q96L92 541 aa26.02■■□□□ 1.76
ATPAF1-213ENST00000574428 PARP2Q9UGN5 583 aa26.02■■□□□ 1.76
ATPAF1-213ENST00000574428 ITIH6Q6UXX5 1313 aa26.02■■□□□ 1.76
ATPAF1-213ENST00000574428 GTPBP10A4D1E9 387 aaKnown RBP26.02■■□□□ 1.76
ATPAF1-213ENST00000574428 TRIM43BA6NCK2 446 aa26.02■■□□□ 1.76
ATPAF1-213ENST00000574428 TFAMQ00059 246 aaKnown RBP26.02■■□□□ 1.76
ATPAF1-213ENST00000574428 APBA1Q02410 837 aa26.02■■□□□ 1.76
ATPAF1-213ENST00000574428 EXOC3L4Q17RC7 722 aa26.02■■□□□ 1.76
ATPAF1-213ENST00000574428 KRT39Q6A163 491 aa26.02■■□□□ 1.76
ATPAF1-213ENST00000574428 JADE1Q6IE81 842 aa26.02■■□□□ 1.76
ATPAF1-213ENST00000574428 DBF4BQ8NFT6 615 aa26.02■■□□□ 1.76
ATPAF1-213ENST00000574428 LINC01599Q8WXQ3 324 aa26.02■■□□□ 1.76
ATPAF1-213ENST00000574428 TRIM43Q96BQ3 446 aaPredicted RBP26.02■■□□□ 1.76
ATPAF1-213ENST00000574428 LSM14BQ9BX40 385 aaKnown RBP26.02■■□□□ 1.76
ATPAF1-213ENST00000574428 MTMR12Q9C0I1 747 aa26.02■■□□□ 1.76
ATPAF1-213ENST00000574428 FAM207AQ9NSI2 230 aaPredicted RBP26.02■■□□□ 1.76
ATPAF1-213ENST00000574428 KLK14Q9P0G3 267 aa26.02■■□□□ 1.76
ATPAF1-213ENST00000574428 SLC9A1P19634 815 aa26.01■■□□□ 1.75
ATPAF1-213ENST00000574428 COL13A1Q5TAT6 717 aaPredicted RBP26.01■■□□□ 1.75
ATPAF1-213ENST00000574428 TDRD10Q5VZ19 366 aaKnown RBP26.01■■□□□ 1.75
ATPAF1-213ENST00000574428 C15orf39Q6ZRI6 1047 aa26.01■■□□□ 1.75
ATPAF1-213ENST00000574428 TRAIPQ9BWF2 469 aa26.01■■□□□ 1.75
ATPAF1-213ENST00000574428 PCDH10Q9P2E7 1040 aa26.01■■□□□ 1.75
ATPAF1-213ENST00000574428 MEIS3P2A8K0S8 358 aa26■■□□□ 1.75
ATPAF1-213ENST00000574428 PON1P27169 355 aa26■■□□□ 1.75
ATPAF1-213ENST00000574428 TCTN1Q2MV58 587 aa26■■□□□ 1.75
ATPAF1-213ENST00000574428 DEFB128Q7Z7B8 93 aa26■■□□□ 1.75
ATPAF1-213ENST00000574428 RTN4RL1Q86UN2 441 aaPredicted RBP26■■□□□ 1.75
ATPAF1-213ENST00000574428 SEPT8Q92599 483 aa26■■□□□ 1.75
ATPAF1-213ENST00000574428 LPPQ93052 612 aa26■■□□□ 1.75
ATPAF1-213ENST00000574428 ASB7Q9H672 318 aa26■■□□□ 1.75
ATPAF1-213ENST00000574428 RGS18Q9NS28 235 aa26■■□□□ 1.75
ATPAF1-213ENST00000574428 RALGAPA2Q2PPJ7 1873 aa26■■□□□ 1.75
ATPAF1-213ENST00000574428 CITO14578 2027 aa26■■□□□ 1.75
ATPAF1-213ENST00000574428 P4HA2O15460 535 aa26■■□□□ 1.75
ATPAF1-213ENST00000574428 C4BPAP04003 597 aaKnown RBP26■■□□□ 1.75
ATPAF1-213ENST00000574428 PTMAP06454 111 aaKnown RBP26■■□□□ 1.75
ATPAF1-213ENST00000574428 ACTN1P12814 892 aa26■■□□□ 1.75
ATPAF1-213ENST00000574428 ITGB8P26012 769 aa26■■□□□ 1.75
ATPAF1-213ENST00000574428 RAB27AP51159 221 aa26■■□□□ 1.75
ATPAF1-213ENST00000574428 TBX2Q13207 712 aaPredicted RBP26■■□□□ 1.75
ATPAF1-213ENST00000574428 BIRC3Q13489 604 aa26■■□□□ 1.75
ATPAF1-213ENST00000574428 ZACNQ401N2 412 aa26■■□□□ 1.75
ATPAF1-213ENST00000574428 RNF169Q8NCN4 708 aa26■■□□□ 1.75
ATPAF1-213ENST00000574428 TAS1R2Q8TE23 839 aa26■■□□□ 1.75
ATPAF1-213ENST00000574428 INTS2Q9H0H0 1204 aaKnown RBP26■■□□□ 1.75
ATPAF1-213ENST00000574428 PLEKHA5Q9HAU0 1116 aa26■■□□□ 1.75
ATPAF1-213ENST00000574428 RNF19AQ9NV58 838 aa26■■□□□ 1.75
ATPAF1-213ENST00000574428 A0A0U1RQF3 1178 aa25.99■■□□□ 1.75
ATPAF1-213ENST00000574428 ESPNB1AK53 854 aa25.99■■□□□ 1.75
ATPAF1-213ENST00000574428 KIAA0355O15063 1070 aa25.99■■□□□ 1.75
ATPAF1-213ENST00000574428 EPHB6O15197 1021 aa25.99■■□□□ 1.75
ATPAF1-213ENST00000574428 PMM2O15305 246 aa25.99■■□□□ 1.75
ATPAF1-213ENST00000574428 LRRN2O75325 713 aa25.99■■□□□ 1.75
ATPAF1-213ENST00000574428 PARNO95453 639 aaKnown RBP25.99■■□□□ 1.75
ATPAF1-213ENST00000574428 CXCL10P02778 98 aa25.99■■□□□ 1.75
ATPAF1-213ENST00000574428 ITGA4P13612 1032 aa25.99■■□□□ 1.75
ATPAF1-213ENST00000574428 CETN1Q12798 172 aa25.99■■□□□ 1.75
ATPAF1-213ENST00000574428 DUOXA2Q1HG44 320 aa25.99■■□□□ 1.75
ATPAF1-213ENST00000574428 EPC2Q52LR7 807 aa25.99■■□□□ 1.75
ATPAF1-213ENST00000574428 FTHL17Q9BXU8 183 aa25.99■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms