RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 STK38Q15208 465 aa8.9□□□□□ -0.98
VPS53-214ENST00000572607 CLUL1Q15846 466 aa8.9□□□□□ -0.98
VPS53-214ENST00000572607 CTC1Q2NKJ3 1217 aa8.9□□□□□ -0.98
VPS53-214ENST00000572607 C1orf186Q6ZWK4 172 aa8.9□□□□□ -0.98
VPS53-214ENST00000572607 ADGRD2Q7Z7M1 963 aa8.9□□□□□ -0.98
VPS53-214ENST00000572607 DDX53Q86TM3 631 aaKnown RBP8.9□□□□□ -0.98
VPS53-214ENST00000572607 GPBP1Q86WP2 473 aa8.9□□□□□ -0.98
VPS53-214ENST00000572607 ZNF280BQ86YH2 543 aa8.9□□□□□ -0.98
VPS53-214ENST00000572607 IGSF21Q96ID5 467 aa8.9□□□□□ -0.98
VPS53-214ENST00000572607 TCHPQ9BT92 498 aa8.9□□□□□ -0.98
VPS53-214ENST00000572607 COLEC11Q9BWP8 271 aa8.9□□□□□ -0.98
VPS53-214ENST00000572607 MRPL4Q9BYD3 311 aaKnown RBP8.9□□□□□ -0.98
VPS53-214ENST00000572607 CCDC113Q9H0I3 377 aa8.9□□□□□ -0.98
VPS53-214ENST00000572607 ZHX3Q9H4I2 956 aa8.9□□□□□ -0.98
VPS53-214ENST00000572607 SNTG2Q9NY99 539 aa8.9□□□□□ -0.98
VPS53-214ENST00000572607 LARSQ9P2J5 1176 aaKnown RBP8.9□□□□□ -0.98
VPS53-214ENST00000572607 DNAJB4Q9UDY4 337 aa8.9□□□□□ -0.98
VPS53-214ENST00000572607 CD207Q9UJ71 328 aa8.9□□□□□ -0.98
VPS53-214ENST00000572607 ODF2LQ9ULJ1 636 aa8.9□□□□□ -0.98
VPS53-214ENST00000572607 SSX2IPQ9Y2D8 614 aa8.9□□□□□ -0.98
VPS53-214ENST00000572607 PRG3Q9Y2Y8 225 aaPredicted RBP8.9□□□□□ -0.98
VPS53-214ENST00000572607 PCDHGC5Q9Y5F6 944 aa8.9□□□□□ -0.98
VPS53-214ENST00000572607 CLIC4Q9Y696 253 aa8.9□□□□□ -0.98
VPS53-214ENST00000572607 MYO15AQ9UKN7 3530 aa8.89□□□□□ -0.99
VPS53-214ENST00000572607 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP8.89□□□□□ -0.99
VPS53-214ENST00000572607 NRP1O14786 923 aa8.89□□□□□ -0.99
VPS53-214ENST00000572607 PER2O15055 1255 aa8.89□□□□□ -0.99
VPS53-214ENST00000572607 INPPL1O15357 1258 aa8.89□□□□□ -0.99
VPS53-214ENST00000572607 LINC01565O15544 149 aa8.89□□□□□ -0.99
VPS53-214ENST00000572607 DDHD2O94830 711 aa8.89□□□□□ -0.99
VPS53-214ENST00000572607 CXCL14O95715 111 aa8.89□□□□□ -0.99
VPS53-214ENST00000572607 URODP06132 367 aa8.89□□□□□ -0.99
VPS53-214ENST00000572607 PLCG1P19174 1290 aa8.89□□□□□ -0.99
VPS53-214ENST00000572607 SCP2P22307 547 aa8.89□□□□□ -0.99
VPS53-214ENST00000572607 SSTR3P32745 418 aaPredicted RBP8.89□□□□□ -0.99
VPS53-214ENST00000572607 GTF2F1P35269 517 aaKnown RBP eCLIP8.89□□□□□ -0.99
VPS53-214ENST00000572607 SLC12A3P55017 1021 aa8.89□□□□□ -0.99
VPS53-214ENST00000572607 SMAD4Q13485 552 aaKnown RBP8.89□□□□□ -0.99
VPS53-214ENST00000572607 DHX8Q14562 1220 aaKnown RBP8.89□□□□□ -0.99
VPS53-214ENST00000572607 KARSQ15046 597 aaKnown RBP8.89□□□□□ -0.99
VPS53-214ENST00000572607 ZNF568Q3ZCX4 644 aa8.89□□□□□ -0.99
VPS53-214ENST00000572607 RRAGBQ5VZM2 374 aa8.89□□□□□ -0.99
VPS53-214ENST00000572607 LLGL2Q6P1M3 1020 aa8.89□□□□□ -0.99
VPS53-214ENST00000572607 FAM173BQ6P4H8 233 aa8.89□□□□□ -0.99
VPS53-214ENST00000572607 LIAT1Q6ZQX7 453 aa8.89□□□□□ -0.99
VPS53-214ENST00000572607 COLGALT2Q8IYK4 626 aa8.89□□□□□ -0.99
VPS53-214ENST00000572607 VPS52Q8N1B4 723 aa8.89□□□□□ -0.99
VPS53-214ENST00000572607 MRPL43Q8N983 215 aaKnown RBP8.89□□□□□ -0.99
VPS53-214ENST00000572607 KRI1Q8N9T8 703 aaKnown RBP8.89□□□□□ -0.99
VPS53-214ENST00000572607 SPIRE2Q8WWL2 714 aa8.89□□□□□ -0.99
VPS53-214ENST00000572607 LARP4BQ92615 738 aaKnown RBP8.89□□□□□ -0.99
VPS53-214ENST00000572607 CASP10Q92851 521 aa8.89□□□□□ -0.99
VPS53-214ENST00000572607 BICD1Q96G01 975 aa8.89□□□□□ -0.99
VPS53-214ENST00000572607 FBXL18Q96ME1 805 aa8.89□□□□□ -0.99
VPS53-214ENST00000572607 ZFP42Q96MM3 310 aa8.89□□□□□ -0.99
VPS53-214ENST00000572607 POP1Q99575 1024 aaKnown RBP8.89□□□□□ -0.99
VPS53-214ENST00000572607 CCDC94Q9BW85 323 aaPredicted RBP8.89□□□□□ -0.99
VPS53-214ENST00000572607 EMILIN2Q9BXX0 1053 aa8.89□□□□□ -0.99
VPS53-214ENST00000572607 CCSER1Q9C0I3 900 aa8.89□□□□□ -0.99
VPS53-214ENST00000572607 ZBP1Q9H171 429 aa8.89□□□□□ -0.99
VPS53-214ENST00000572607 TOPORSQ9NS56 1045 aaPredicted RBP8.89□□□□□ -0.99
VPS53-214ENST00000572607 KLK14Q9P0G3 267 aa8.89□□□□□ -0.99
VPS53-214ENST00000572607 BARX2Q9UMQ3 279 aaPredicted RBP8.89□□□□□ -0.99
VPS53-214ENST00000572607 TNFSF13BQ9Y275 285 aa8.89□□□□□ -0.99
VPS53-214ENST00000572607 SRPRBQ9Y5M8 271 aaKnown RBP8.89□□□□□ -0.99
VPS53-214ENST00000572607 FNDC1Q4ZHG4 1894 aaPredicted RBP8.89□□□□□ -0.99
VPS53-214ENST00000572607 DMDP11532 3685 aa8.89□□□□□ -0.99
VPS53-214ENST00000572607 C2orf71A6NGG8 1288 aa8.88□□□□□ -0.99
VPS53-214ENST00000572607 SFI1A8K8P3 1242 aa8.88□□□□□ -0.99
VPS53-214ENST00000572607 HIDE1A8MVS5 230 aa8.88□□□□□ -0.99
VPS53-214ENST00000572607 SLC16A4O15374 487 aa8.88□□□□□ -0.99
VPS53-214ENST00000572607 TBX10O75333 385 aa8.88□□□□□ -0.99
VPS53-214ENST00000572607 TADA2AO75478 443 aa8.88□□□□□ -0.99
VPS53-214ENST00000572607 RECQL4O94761 1208 aa8.88□□□□□ -0.99
VPS53-214ENST00000572607 SOD2P04179 222 aa8.88□□□□□ -0.99
VPS53-214ENST00000572607 THP07101 528 aa8.88□□□□□ -0.99
VPS53-214ENST00000572607 CTSAP10619 480 aa8.88□□□□□ -0.99
VPS53-214ENST00000572607 HARSP12081 509 aaKnown RBP8.88□□□□□ -0.99
VPS53-214ENST00000572607 ABCD1P33897 745 aa8.88□□□□□ -0.99
VPS53-214ENST00000572607 LTBRP36941 435 aa8.88□□□□□ -0.99
VPS53-214ENST00000572607 MATR3P43243 847 aaKnown RBP eCLIP8.88□□□□□ -0.99
VPS53-214ENST00000572607 AFF1P51825 1210 aaKnown RBP8.88□□□□□ -0.99
VPS53-214ENST00000572607 GRIN1Q05586 938 aa8.88□□□□□ -0.99
VPS53-214ENST00000572607 DLX2Q07687 328 aaPredicted RBP8.88□□□□□ -0.99
VPS53-214ENST00000572607 MAPK7Q13164 816 aa8.88□□□□□ -0.99
VPS53-214ENST00000572607 PTPAQ15257 358 aa8.88□□□□□ -0.99
VPS53-214ENST00000572607 NT5DC1Q5TFE4 455 aa8.88□□□□□ -0.99
VPS53-214ENST00000572607 KIAA1841Q6NSI8 718 aa8.88□□□□□ -0.99
VPS53-214ENST00000572607 ELMSAN1Q6PJG2 1045 aa8.88□□□□□ -0.99
VPS53-214ENST00000572607 CCDC73Q6ZRK6 1079 aa8.88□□□□□ -0.99
VPS53-214ENST00000572607 PPFIBP1Q86W92 1011 aa8.88□□□□□ -0.99
VPS53-214ENST00000572607 TMEM173Q86WV6 379 aaPredicted RBP8.88□□□□□ -0.99
VPS53-214ENST00000572607 DAW1Q8N136 415 aa8.88□□□□□ -0.99
VPS53-214ENST00000572607 MYCT1Q8N699 235 aa8.88□□□□□ -0.99
VPS53-214ENST00000572607 RAD54LQ92698 747 aa8.88□□□□□ -0.99
VPS53-214ENST00000572607 USP28Q96RU2 1077 aa8.88□□□□□ -0.99
VPS53-214ENST00000572607 PHOX2BQ99453 314 aa8.88□□□□□ -0.99
VPS53-214ENST00000572607 HERC2P3Q9BVR0 1158 aa8.88□□□□□ -0.99
VPS53-214ENST00000572607 PARVGQ9HBI0 331 aa8.88□□□□□ -0.99
VPS53-214ENST00000572607 MRPL17Q9NRX2 175 aaKnown RBP8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms