RNA–Protein interactions for RNA: ENST00000571409.1

CTDNEP1-206, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 5

Gene CTDNEP1, Length 741 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-206ENST00000571409 ODF2LQ9ULJ1 636 aa33.27■■■□□ 2.92
CTDNEP1-206ENST00000571409 MAPTP10636 758 aaKnown RBP33.26■■■□□ 2.91
CTDNEP1-206ENST00000571409 MCF2P10911 925 aa33.26■■■□□ 2.91
CTDNEP1-206ENST00000571409 MPZL3Q6UWV2 235 aa33.26■■■□□ 2.91
CTDNEP1-206ENST00000571409 GPR65Q8IYL9 337 aa33.26■■■□□ 2.91
CTDNEP1-206ENST00000571409 REEP2Q9BRK0 252 aa33.26■■■□□ 2.91
CTDNEP1-206ENST00000571409 TOPORSQ9NS56 1045 aaPredicted RBP33.26■■■□□ 2.91
CTDNEP1-206ENST00000571409 TRIP11Q15643 1979 aa33.26■■■□□ 2.91
CTDNEP1-206ENST00000571409 ABLIM1O14639 778 aa33.25■■■□□ 2.91
CTDNEP1-206ENST00000571409 GLUD1P00367 558 aa33.25■■■□□ 2.91
CTDNEP1-206ENST00000571409 MARCKSP29966 332 aaPredicted RBP33.25■■■□□ 2.91
CTDNEP1-206ENST00000571409 MCM6Q14566 821 aa33.25■■■□□ 2.91
CTDNEP1-206ENST00000571409 EDAQ92838 391 aa33.25■■■□□ 2.91
CTDNEP1-206ENST00000571409 ZBTB45Q96K62 511 aaPredicted RBP33.25■■■□□ 2.91
CTDNEP1-206ENST00000571409 HARSP12081 509 aaKnown RBP33.24■■■□□ 2.91
CTDNEP1-206ENST00000571409 NCKAP1LP55160 1127 aa33.24■■■□□ 2.91
CTDNEP1-206ENST00000571409 RTP2Q5QGT7 225 aa33.24■■■□□ 2.91
CTDNEP1-206ENST00000571409 GPR149Q86SP6 731 aa33.24■■■□□ 2.91
CTDNEP1-206ENST00000571409 GLYCTKQ8IVS8 523 aa33.24■■■□□ 2.91
CTDNEP1-206ENST00000571409 RAD54LQ92698 747 aa33.24■■■□□ 2.91
CTDNEP1-206ENST00000571409 CCSER1Q9C0I3 900 aa33.24■■■□□ 2.91
CTDNEP1-206ENST00000571409 FNIP2Q9P278 1114 aa33.24■■■□□ 2.91
CTDNEP1-206ENST00000571409 MTMR6Q9Y217 621 aa33.24■■■□□ 2.91
CTDNEP1-206ENST00000571409 SMIM28A0A1B0GU29 152 aa33.23■■■□□ 2.91
CTDNEP1-206ENST00000571409 C2CD4DB7Z1M9 353 aa33.23■■■□□ 2.91
CTDNEP1-206ENST00000571409 TOM1L1O75674 476 aa33.23■■■□□ 2.91
CTDNEP1-206ENST00000571409 BRD1O95696 1058 aa33.23■■■□□ 2.91
CTDNEP1-206ENST00000571409 CREMQ03060 361 aa33.23■■■□□ 2.91
CTDNEP1-206ENST00000571409 CEBPZQ03701 1054 aaKnown RBP33.23■■■□□ 2.91
CTDNEP1-206ENST00000571409 SPECC1Q5M775 1068 aa33.23■■■□□ 2.91
CTDNEP1-206ENST00000571409 FAM171A1Q5VUB5 890 aa33.23■■■□□ 2.91
CTDNEP1-206ENST00000571409 PRSS55Q6UWB4 352 aaPredicted RBP33.23■■■□□ 2.91
CTDNEP1-206ENST00000571409 CEP57Q86XR8 500 aa33.23■■■□□ 2.91
CTDNEP1-206ENST00000571409 PALB2Q86YC2 1186 aa33.23■■■□□ 2.91
CTDNEP1-206ENST00000571409 ANKFY1Q9P2R3 1169 aa33.23■■■□□ 2.91
CTDNEP1-206ENST00000571409 DPP7Q9UHL4 492 aa33.23■■■□□ 2.91
CTDNEP1-206ENST00000571409 H0YCG3 227 aa33.22■■■□□ 2.91
CTDNEP1-206ENST00000571409 MYBP10242 640 aa33.22■■■□□ 2.91
CTDNEP1-206ENST00000571409 RPL17P18621 184 aaKnown RBP33.22■■■□□ 2.91
CTDNEP1-206ENST00000571409 ZXDAP98168 799 aa33.22■■■□□ 2.91
CTDNEP1-206ENST00000571409 XKR4Q5GH76 650 aa33.22■■■□□ 2.91
CTDNEP1-206ENST00000571409 ELMSAN1Q6PJG2 1045 aa33.22■■■□□ 2.91
CTDNEP1-206ENST00000571409 ALKAL1Q6UXT8 129 aa33.22■■■□□ 2.91
CTDNEP1-206ENST00000571409 LARP4BQ92615 738 aaKnown RBP33.22■■■□□ 2.91
CTDNEP1-206ENST00000571409 EPSTI1Q96J88 318 aa33.22■■■□□ 2.91
CTDNEP1-206ENST00000571409 SNX27Q96L92 541 aa33.22■■■□□ 2.91
CTDNEP1-206ENST00000571409 ACAP3Q96P50 834 aa33.22■■■□□ 2.91
CTDNEP1-206ENST00000571409 TTPALQ9BTX7 342 aa33.22■■■□□ 2.91
CTDNEP1-206ENST00000571409 GOLGA2P5Q9HBQ8 144 aa33.22■■■□□ 2.91
CTDNEP1-206ENST00000571409 FBXO2Q9UK22 296 aaPredicted RBP33.22■■■□□ 2.91
CTDNEP1-206ENST00000571409 HCN4Q9Y3Q4 1203 aa33.22■■■□□ 2.91
CTDNEP1-206ENST00000571409 DENND4AQ7Z401 1863 aa33.22■■■□□ 2.91
CTDNEP1-206ENST00000571409 FAM13AO94988 1023 aa33.21■■■□□ 2.91
CTDNEP1-206ENST00000571409 KRT18P05783 430 aaKnown RBP33.21■■■□□ 2.91
CTDNEP1-206ENST00000571409 SPATA31D3P0C874 917 aa33.21■■■□□ 2.91
CTDNEP1-206ENST00000571409 CLCNKBP51801 687 aa33.21■■■□□ 2.91
CTDNEP1-206ENST00000571409 ELAVL2Q12926 359 aaKnown RBP33.21■■■□□ 2.91
CTDNEP1-206ENST00000571409 NOLC1Q14978 699 aaKnown RBP eCLIP33.21■■■□□ 2.91
CTDNEP1-206ENST00000571409 ZPBP2Q6X784 338 aa33.21■■■□□ 2.91
CTDNEP1-206ENST00000571409 C15orf39Q6ZRI6 1047 aa33.21■■■□□ 2.91
CTDNEP1-206ENST00000571409 SPATA31D4Q6ZUB0 917 aa33.21■■■□□ 2.91
CTDNEP1-206ENST00000571409 USP49Q70CQ1 688 aa33.21■■■□□ 2.91
CTDNEP1-206ENST00000571409 HAUS6Q7Z4H7 955 aa33.21■■■□□ 2.91
CTDNEP1-206ENST00000571409 UROC1Q96N76 676 aa33.21■■■□□ 2.91
CTDNEP1-206ENST00000571409 SRPRBQ9Y5M8 271 aaKnown RBP33.21■■■□□ 2.91
CTDNEP1-206ENST00000571409 C2orf16Q68DN1 1984 aa33.21■■■□□ 2.91
CTDNEP1-206ENST00000571409 TMEM189-UBE2V1I3L0A0 370 aa33.2■■■□□ 2.91
CTDNEP1-206ENST00000571409 STX6O43752 255 aa33.2■■■□□ 2.91
CTDNEP1-206ENST00000571409 B3GAT3O94766 335 aa33.2■■■□□ 2.91
CTDNEP1-206ENST00000571409 MYCT1Q8N699 235 aa33.2■■■□□ 2.91
CTDNEP1-206ENST00000571409 PIK3R5Q8WYR1 880 aa33.2■■■□□ 2.91
CTDNEP1-206ENST00000571409 TGM5O43548 720 aa33.19■■■□□ 2.9
CTDNEP1-206ENST00000571409 ZNF131P52739 623 aa33.19■■■□□ 2.9
CTDNEP1-206ENST00000571409 PTPN21Q16825 1174 aa33.19■■■□□ 2.9
CTDNEP1-206ENST00000571409 UPP1Q16831 310 aa33.19■■■□□ 2.9
CTDNEP1-206ENST00000571409 DCLRE1AQ6PJP8 1040 aa33.19■■■□□ 2.9
CTDNEP1-206ENST00000571409 TDRD5Q8NAT2 981 aaKnown RBP33.19■■■□□ 2.9
CTDNEP1-206ENST00000571409 CMASQ8NFW8 434 aaPredicted RBP33.19■■■□□ 2.9
CTDNEP1-206ENST00000571409 HDAC7Q8WUI4 952 aa33.19■■■□□ 2.9
CTDNEP1-206ENST00000571409 SNX21Q969T3 373 aa33.19■■■□□ 2.9
CTDNEP1-206ENST00000571409 BICD1Q96G01 975 aa33.19■■■□□ 2.9
CTDNEP1-206ENST00000571409 ZMAT2Q96NC0 199 aaKnown RBP33.19■■■□□ 2.9
CTDNEP1-206ENST00000571409 ZSCAN16Q9H4T2 348 aaPredicted RBP33.19■■■□□ 2.9
CTDNEP1-206ENST00000571409 PARVGQ9HBI0 331 aa33.19■■■□□ 2.9
CTDNEP1-206ENST00000571409 CITO14578 2027 aa33.19■■■□□ 2.9
CTDNEP1-206ENST00000571409 CCDC195A0A1B0GUA6 201 aa33.18■■■□□ 2.9
CTDNEP1-206ENST00000571409 K7ENM7 598 aa33.18■■■□□ 2.9
CTDNEP1-206ENST00000571409 CLDN3O15551 220 aa33.18■■■□□ 2.9
CTDNEP1-206ENST00000571409 C1RP00736 705 aa33.18■■■□□ 2.9
CTDNEP1-206ENST00000571409 IGFBP6P24592 240 aaPredicted RBP33.18■■■□□ 2.9
CTDNEP1-206ENST00000571409 DDIT3P35638 169 aa33.18■■■□□ 2.9
CTDNEP1-206ENST00000571409 SOX4Q06945 474 aaPredicted RBP33.18■■■□□ 2.9
CTDNEP1-206ENST00000571409 PSMD5Q16401 504 aa33.18■■■□□ 2.9
CTDNEP1-206ENST00000571409 SEZ6Q53EL9 994 aa33.18■■■□□ 2.9
CTDNEP1-206ENST00000571409 TRIM67Q6ZTA4 783 aa33.18■■■□□ 2.9
CTDNEP1-206ENST00000571409 CCDC149Q6ZUS6 474 aa33.18■■■□□ 2.9
CTDNEP1-206ENST00000571409 LNX1Q8TBB1 728 aaPredicted RBP33.18■■■□□ 2.9
CTDNEP1-206ENST00000571409 CLIC6Q96NY7 704 aa33.18■■■□□ 2.9
CTDNEP1-206ENST00000571409 USP28Q96RU2 1077 aa33.18■■■□□ 2.9
CTDNEP1-206ENST00000571409 ZHX3Q9H4I2 956 aa33.18■■■□□ 2.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms