RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 AUTS2Q8WXX7 1259 aa15.29■□□□□ 0.04
CLN3-235ENST00000568497 SECISBP2LQ93073 1101 aaKnown RBP15.29■□□□□ 0.04
CLN3-235ENST00000568497 DHX58Q96C10 678 aa15.29■□□□□ 0.04
CLN3-235ENST00000568497 REEP2Q9BRK0 252 aa15.29■□□□□ 0.04
CLN3-235ENST00000568497 CCSER1Q9C0I3 900 aa15.29■□□□□ 0.04
CLN3-235ENST00000568497 AGPAT5Q9NUQ2 364 aa15.29■□□□□ 0.04
CLN3-235ENST00000568497 IGSF9Q9P2J2 1179 aa15.29■□□□□ 0.04
CLN3-235ENST00000568497 INPP5FQ9Y2H2 1132 aa15.29■□□□□ 0.04
CLN3-235ENST00000568497 MYH11P35749 1972 aa15.28■□□□□ 0.04
CLN3-235ENST00000568497 NPTXRO95502 500 aa15.28■□□□□ 0.04
CLN3-235ENST00000568497 YEATS4O95619 227 aa15.28■□□□□ 0.04
CLN3-235ENST00000568497 ADRB1P08588 477 aa15.28■□□□□ 0.04
CLN3-235ENST00000568497 NPTX2P47972 431 aa15.28■□□□□ 0.04
CLN3-235ENST00000568497 LMNB2Q03252 620 aa15.28■□□□□ 0.04
CLN3-235ENST00000568497 TFDP1Q14186 410 aa15.28■□□□□ 0.04
CLN3-235ENST00000568497 MXD4Q14582 209 aaPredicted RBP15.28■□□□□ 0.04
CLN3-235ENST00000568497 NT5DC1Q5TFE4 455 aa15.28■□□□□ 0.04
CLN3-235ENST00000568497 SRGAP1Q7Z6B7 1085 aa15.28■□□□□ 0.04
CLN3-235ENST00000568497 GPR161Q8N6U8 529 aaKnown RBP15.28■□□□□ 0.04
CLN3-235ENST00000568497 RSAD2Q8WXG1 361 aa15.28■□□□□ 0.04
CLN3-235ENST00000568497 HPS3Q969F9 1004 aa15.28■□□□□ 0.04
CLN3-235ENST00000568497 TMEM169Q96HH4 297 aa15.28■□□□□ 0.04
CLN3-235ENST00000568497 CASD1Q96PB1 797 aa15.28■□□□□ 0.04
CLN3-235ENST00000568497 SFXN1Q9H9B4 322 aa15.28■□□□□ 0.04
CLN3-235ENST00000568497 KLK14Q9P0G3 267 aa15.28■□□□□ 0.04
CLN3-235ENST00000568497 TBC1D7Q9P0N9 293 aa15.28■□□□□ 0.04
CLN3-235ENST00000568497 CACNG4Q9UBN1 327 aa15.28■□□□□ 0.04
CLN3-235ENST00000568497 USP18Q9UMW8 372 aa15.28■□□□□ 0.04
CLN3-235ENST00000568497 SIT1Q9Y3P8 196 aa15.28■□□□□ 0.04
CLN3-235ENST00000568497 PPME1Q9Y570 386 aa15.28■□□□□ 0.04
CLN3-235ENST00000568497 CHD6Q8TD26 2715 aa15.28■□□□□ 0.04
CLN3-235ENST00000568497 CHD8Q9HCK8 2581 aa15.28■□□□□ 0.04
CLN3-235ENST00000568497 ATRXP46100 2492 aa15.27■□□□□ 0.04
CLN3-235ENST00000568497 PRR5-ARHGAP8B1AHC4 643 aa15.27■□□□□ 0.04
CLN3-235ENST00000568497 NT5C1B-RDH14C9J2C7 533 aa15.27■□□□□ 0.04
CLN3-235ENST00000568497 ASAP2O43150 1006 aa15.27■□□□□ 0.04
CLN3-235ENST00000568497 GAS2O43903 313 aaKnown RBP15.27■□□□□ 0.04
CLN3-235ENST00000568497 B4GALT3O60512 393 aa15.27■□□□□ 0.04
CLN3-235ENST00000568497 ERLIN2O94905 339 aa15.27■□□□□ 0.04
CLN3-235ENST00000568497 PRKCBP05771 671 aa15.27■□□□□ 0.04
CLN3-235ENST00000568497 HARSP12081 509 aaKnown RBP15.27■□□□□ 0.04
CLN3-235ENST00000568497 MUTP22033 750 aa15.27■□□□□ 0.04
CLN3-235ENST00000568497 GBP2P32456 591 aaPredicted RBP15.27■□□□□ 0.04
CLN3-235ENST00000568497 STAT6P42226 847 aa15.27■□□□□ 0.04
CLN3-235ENST00000568497 ARHGAP8P85298 464 aa15.27■□□□□ 0.04
CLN3-235ENST00000568497 GIT2Q14161 759 aa15.27■□□□□ 0.04
CLN3-235ENST00000568497 GPR149Q86SP6 731 aa15.27■□□□□ 0.04
CLN3-235ENST00000568497 ZNF598Q86UK7 904 aaKnown RBP15.27■□□□□ 0.04
CLN3-235ENST00000568497 VPS52Q8N1B4 723 aa15.27■□□□□ 0.04
CLN3-235ENST00000568497 SLC39A11Q8N1S5 342 aa15.27■□□□□ 0.04
CLN3-235ENST00000568497 SMG8Q8ND04 991 aaKnown RBP15.27■□□□□ 0.04
CLN3-235ENST00000568497 RTKNQ9BST9 563 aa15.27■□□□□ 0.04
CLN3-235ENST00000568497 FGFBP2Q9BYJ0 223 aa15.27■□□□□ 0.04
CLN3-235ENST00000568497 CCDC113Q9H0I3 377 aa15.27■□□□□ 0.04
CLN3-235ENST00000568497 NXF3Q9H4D5 531 aaKnown RBP15.27■□□□□ 0.04
CLN3-235ENST00000568497 FAM105AQ9NUU6 356 aa15.27■□□□□ 0.04
CLN3-235ENST00000568497 RCOR1Q9UKL0 485 aa15.27■□□□□ 0.04
CLN3-235ENST00000568497 PCDHB2Q9Y5E7 798 aa15.27■□□□□ 0.04
CLN3-235ENST00000568497 USP24Q9UPU5 2620 aa15.27■□□□□ 0.03
CLN3-235ENST00000568497 A0A1B0GVL5 298 aa15.26■□□□□ 0.03
CLN3-235ENST00000568497 CUTAO60888 179 aa15.26■□□□□ 0.03
CLN3-235ENST00000568497 PPP6R2O75170 966 aa15.26■□□□□ 0.03
CLN3-235ENST00000568497 KRT18P05783 430 aaKnown RBP15.26■□□□□ 0.03
CLN3-235ENST00000568497 AKAP5P24588 427 aa15.26■□□□□ 0.03
CLN3-235ENST00000568497 NMT1P30419 496 aaKnown RBP15.26■□□□□ 0.03
CLN3-235ENST00000568497 ALDH7A1P49419 539 aaKnown RBP15.26■□□□□ 0.03
CLN3-235ENST00000568497 TMEM132AQ24JP5 1023 aa15.26■□□□□ 0.03
CLN3-235ENST00000568497 SEZ6Q53EL9 994 aa15.26■□□□□ 0.03
CLN3-235ENST00000568497 CDCA2Q69YH5 1023 aaPredicted RBP15.26■□□□□ 0.03
CLN3-235ENST00000568497 EXOC8Q8IYI6 725 aa15.26■□□□□ 0.03
CLN3-235ENST00000568497 LARP4BQ92615 738 aaKnown RBP15.26■□□□□ 0.03
CLN3-235ENST00000568497 RABGGTAQ92696 567 aa15.26■□□□□ 0.03
CLN3-235ENST00000568497 ZBTB45Q96K62 511 aaPredicted RBP15.26■□□□□ 0.03
CLN3-235ENST00000568497 IFT74Q96LB3 600 aa15.26■□□□□ 0.03
CLN3-235ENST00000568497 SPATA32Q96LK8 384 aa15.26■□□□□ 0.03
CLN3-235ENST00000568497 NT5C3AQ9H0P0 336 aa15.26■□□□□ 0.03
CLN3-235ENST00000568497 ARHGEF3Q9NR81 526 aa15.26■□□□□ 0.03
CLN3-235ENST00000568497 IRAK3Q9Y616 596 aa15.26■□□□□ 0.03
CLN3-235ENST00000568497 STK24Q9Y6E0 443 aa15.26■□□□□ 0.03
CLN3-235ENST00000568497 C2orf16Q68DN1 1984 aa15.25■□□□□ 0.03
CLN3-235ENST00000568497 CACNA1IQ9P0X4 2223 aa15.25■□□□□ 0.03
CLN3-235ENST00000568497 TISP43B9A030 160 aa15.25■□□□□ 0.03
CLN3-235ENST00000568497 SPTLC1O15269 473 aa15.25■□□□□ 0.03
CLN3-235ENST00000568497 KCNA4P22459 653 aa15.25■□□□□ 0.03
CLN3-235ENST00000568497 GUCY2CP25092 1073 aa15.25■□□□□ 0.03
CLN3-235ENST00000568497 NAMPTP43490 491 aa15.25■□□□□ 0.03
CLN3-235ENST00000568497 AGMOQ6ZNB7 445 aa15.25■□□□□ 0.03
CLN3-235ENST00000568497 ZBTB8OSQ8IWT0 167 aa15.25■□□□□ 0.03
CLN3-235ENST00000568497 MYCT1Q8N699 235 aa15.25■□□□□ 0.03
CLN3-235ENST00000568497 CEP120Q8N960 986 aa15.25■□□□□ 0.03
CLN3-235ENST00000568497 GLIS3Q8NEA6 775 aa15.25■□□□□ 0.03
CLN3-235ENST00000568497 GPR152Q8TDT2 470 aa15.25■□□□□ 0.03
CLN3-235ENST00000568497 SLC22A17Q8WUG5 538 aa15.25■□□□□ 0.03
CLN3-235ENST00000568497 BORCS6Q96GS4 357 aa15.25■□□□□ 0.03
CLN3-235ENST00000568497 TARS2Q9BW92 718 aaKnown RBP15.25■□□□□ 0.03
CLN3-235ENST00000568497 GBP3Q9H0R5 595 aa15.25■□□□□ 0.03
CLN3-235ENST00000568497 ZBP1Q9H171 429 aa15.25■□□□□ 0.03
CLN3-235ENST00000568497 BLZF1Q9H2G9 400 aa15.25■□□□□ 0.03
CLN3-235ENST00000568497 FZD8Q9H461 694 aa15.25■□□□□ 0.03
CLN3-235ENST00000568497 GOLPH3LQ9H4A5 285 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms