RNA–Protein interactions for RNA: ENST00000568443.2

CLN3-232, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 969 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-232ENST00000568443 MUC6Q6W4X9 2439 aa24.67■■□□□ 1.54
CLN3-232ENST00000568443 BMP15O95972 392 aa24.66■■□□□ 1.54
CLN3-232ENST00000568443 PLA2G4BP0C869 781 aa24.66■■□□□ 1.54
CLN3-232ENST00000568443 RPL17P18621 184 aaKnown RBP24.66■■□□□ 1.54
CLN3-232ENST00000568443 UBA7P41226 1012 aa24.66■■□□□ 1.54
CLN3-232ENST00000568443 ELAVL2Q12926 359 aaKnown RBP24.66■■□□□ 1.54
CLN3-232ENST00000568443 GLRA4Q5JXX5 417 aa24.66■■□□□ 1.54
CLN3-232ENST00000568443 PRSS55Q6UWB4 352 aaPredicted RBP24.66■■□□□ 1.54
CLN3-232ENST00000568443 CYP26C1Q6V0L0 522 aa24.66■■□□□ 1.54
CLN3-232ENST00000568443 OTOP3Q7RTS5 596 aa24.66■■□□□ 1.54
CLN3-232ENST00000568443 TAS1R3Q7RTX0 852 aa24.66■■□□□ 1.54
CLN3-232ENST00000568443 SPIRE2Q8WWL2 714 aa24.66■■□□□ 1.54
CLN3-232ENST00000568443 CDT1Q9H211 546 aa24.66■■□□□ 1.54
CLN3-232ENST00000568443 PTPRHQ9HD43 1115 aa24.66■■□□□ 1.54
CLN3-232ENST00000568443 TOPORSQ9NS56 1045 aaPredicted RBP24.66■■□□□ 1.54
CLN3-232ENST00000568443 KCND2Q9NZV8 630 aa24.66■■□□□ 1.54
CLN3-232ENST00000568443 SLC26A4O43511 780 aa24.65■■□□□ 1.54
CLN3-232ENST00000568443 TGM5O43548 720 aa24.65■■□□□ 1.54
CLN3-232ENST00000568443 PLS3P13797 630 aa24.65■■□□□ 1.54
CLN3-232ENST00000568443 GRM5P41594 1212 aa24.65■■□□□ 1.54
CLN3-232ENST00000568443 PLXNA3P51805 1871 aa24.65■■□□□ 1.54
CLN3-232ENST00000568443 SLC12A3P55017 1021 aa24.65■■□□□ 1.54
CLN3-232ENST00000568443 OSTNP61366 133 aa24.65■■□□□ 1.54
CLN3-232ENST00000568443 STRN3Q13033 797 aa24.65■■□□□ 1.54
CLN3-232ENST00000568443 MTMR3Q13615 1198 aa24.65■■□□□ 1.54
CLN3-232ENST00000568443 CUL4AQ13619 759 aa24.65■■□□□ 1.54
CLN3-232ENST00000568443 TMEM119Q4V9L6 283 aa24.65■■□□□ 1.54
CLN3-232ENST00000568443 RTP2Q5QGT7 225 aa24.65■■□□□ 1.54
CLN3-232ENST00000568443 SUGP1Q8IWZ8 645 aaKnown RBP24.65■■□□□ 1.54
CLN3-232ENST00000568443 UBALD2Q8IYN6 164 aa24.65■■□□□ 1.54
CLN3-232ENST00000568443 CALML4Q96GE6 196 aa24.65■■□□□ 1.54
CLN3-232ENST00000568443 PPP1R10Q96QC0 940 aaKnown RBP24.65■■□□□ 1.54
CLN3-232ENST00000568443 KCNH6Q9H252 994 aa24.65■■□□□ 1.54
CLN3-232ENST00000568443 TRIP11Q15643 1979 aa24.64■■□□□ 1.54
CLN3-232ENST00000568443 VPS37CA5D8V6 355 aaPredicted RBP24.64■■□□□ 1.54
CLN3-232ENST00000568443 RFPL2O75678 378 aa24.64■■□□□ 1.54
CLN3-232ENST00000568443 PDCP20941 246 aa24.64■■□□□ 1.54
CLN3-232ENST00000568443 LILRA6Q6PI73 481 aa24.64■■□□□ 1.54
CLN3-232ENST00000568443 DCLRE1AQ6PJP8 1040 aa24.64■■□□□ 1.54
CLN3-232ENST00000568443 FBXL6Q8N531 539 aa24.64■■□□□ 1.54
CLN3-232ENST00000568443 CEP120Q8N960 986 aa24.64■■□□□ 1.54
CLN3-232ENST00000568443 PIK3R5Q8WYR1 880 aa24.64■■□□□ 1.54
CLN3-232ENST00000568443 SMIM28A0A1B0GU29 152 aa24.63■■□□□ 1.53
CLN3-232ENST00000568443 B3GAT3O94766 335 aa24.63■■□□□ 1.53
CLN3-232ENST00000568443 ASGR2P07307 311 aa24.63■■□□□ 1.53
CLN3-232ENST00000568443 MCF2P10911 925 aa24.63■■□□□ 1.53
CLN3-232ENST00000568443 PDXDC1Q6P996 788 aa24.63■■□□□ 1.53
CLN3-232ENST00000568443 MPZL3Q6UWV2 235 aa24.63■■□□□ 1.53
CLN3-232ENST00000568443 SMG7Q92540 1137 aaKnown RBP24.63■■□□□ 1.53
CLN3-232ENST00000568443 ASIC4Q96FT7 647 aa24.63■■□□□ 1.53
CLN3-232ENST00000568443 UROC1Q96N76 676 aa24.63■■□□□ 1.53
CLN3-232ENST00000568443 ACAP3Q96P50 834 aa24.63■■□□□ 1.53
CLN3-232ENST00000568443 RHOBTB2Q9BYZ6 727 aa24.63■■□□□ 1.53
CLN3-232ENST00000568443 PIDD1Q9HB75 910 aa24.63■■□□□ 1.53
CLN3-232ENST00000568443 MYH11P35749 1972 aa24.63■■□□□ 1.53
CLN3-232ENST00000568443 ZNF318Q5VUA4 2279 aa24.63■■□□□ 1.53
CLN3-232ENST00000568443 MTCL1Q9Y4B5 1905 aaKnown RBP24.63■■□□□ 1.53
CLN3-232ENST00000568443 C2orf16Q68DN1 1984 aa24.62■■□□□ 1.53
CLN3-232ENST00000568443 NPHP3-ACAD11A0A0J9YXS1 232 aa24.62■■□□□ 1.53
CLN3-232ENST00000568443 PROZP22891 400 aa24.62■■□□□ 1.53
CLN3-232ENST00000568443 LONP1P36776 959 aaKnown RBP24.62■■□□□ 1.53
CLN3-232ENST00000568443 CLCNKBP51801 687 aa24.62■■□□□ 1.53
CLN3-232ENST00000568443 SF3A1Q15459 793 aaKnown RBP24.62■■□□□ 1.53
CLN3-232ENST00000568443 PSMD5Q16401 504 aa24.62■■□□□ 1.53
CLN3-232ENST00000568443 ALKAL1Q6UXT8 129 aa24.62■■□□□ 1.53
CLN3-232ENST00000568443 TMEM161BQ8NDZ6 487 aa24.62■■□□□ 1.53
CLN3-232ENST00000568443 LNX1Q8TBB1 728 aaPredicted RBP24.62■■□□□ 1.53
CLN3-232ENST00000568443 LARSQ9P2J5 1176 aaKnown RBP24.62■■□□□ 1.53
CLN3-232ENST00000568443 WDFY4Q6ZS81 3184 aa24.61■■□□□ 1.53
CLN3-232ENST00000568443 TMEM189-UBE2V1I3L0A0 370 aa24.61■■□□□ 1.53
CLN3-232ENST00000568443 BRD1O95696 1058 aa24.61■■□□□ 1.53
CLN3-232ENST00000568443 HARSP12081 509 aaKnown RBP24.61■■□□□ 1.53
CLN3-232ENST00000568443 CACNB1Q02641 598 aaPredicted RBP24.61■■□□□ 1.53
CLN3-232ENST00000568443 DHX8Q14562 1220 aaKnown RBP24.61■■□□□ 1.53
CLN3-232ENST00000568443 UPP1Q16831 310 aa24.61■■□□□ 1.53
CLN3-232ENST00000568443 ARSHQ5FYA8 562 aa24.61■■□□□ 1.53
CLN3-232ENST00000568443 XKR4Q5GH76 650 aa24.61■■□□□ 1.53
CLN3-232ENST00000568443 PDZRN4Q6ZMN7 1036 aaPredicted RBP24.61■■□□□ 1.53
CLN3-232ENST00000568443 RASSF8Q8NHQ8 419 aa24.61■■□□□ 1.53
CLN3-232ENST00000568443 STAMQ92783 540 aa24.61■■□□□ 1.53
CLN3-232ENST00000568443 ZBTB45Q96K62 511 aaPredicted RBP24.61■■□□□ 1.53
CLN3-232ENST00000568443 CLSTN3Q9BQT9 956 aa24.61■■□□□ 1.53
CLN3-232ENST00000568443 WDR6Q9NNW5 1121 aaKnown RBP24.61■■□□□ 1.53
CLN3-232ENST00000568443 SLC38A7Q9NVC3 462 aa24.61■■□□□ 1.53
CLN3-232ENST00000568443 ZDHHC7Q9NXF8 308 aa24.61■■□□□ 1.53
CLN3-232ENST00000568443 ZDBF2Q9HCK1 2354 aa24.61■■□□□ 1.53
CLN3-232ENST00000568443 DENND4AQ7Z401 1863 aa24.6■■□□□ 1.53
CLN3-232ENST00000568443 H0YCG3 227 aa24.6■■□□□ 1.53
CLN3-232ENST00000568443 ABLIM1O14639 778 aa24.6■■□□□ 1.53
CLN3-232ENST00000568443 TRAPPC3O43617 180 aa24.6■■□□□ 1.53
CLN3-232ENST00000568443 TOM1L1O75674 476 aa24.6■■□□□ 1.53
CLN3-232ENST00000568443 MAPTP10636 758 aaKnown RBP24.6■■□□□ 1.53
CLN3-232ENST00000568443 GPBP1Q86WP2 473 aa24.6■■□□□ 1.53
CLN3-232ENST00000568443 ZNF707Q96C28 371 aaPredicted RBP24.6■■□□□ 1.53
CLN3-232ENST00000568443 DDX27Q96GQ7 796 aaKnown RBP24.6■■□□□ 1.53
CLN3-232ENST00000568443 GOLGA2P5Q9HBQ8 144 aa24.6■■□□□ 1.53
CLN3-232ENST00000568443 ANKFY1Q9P2R3 1169 aa24.6■■□□□ 1.53
CLN3-232ENST00000568443 ODF2LQ9ULJ1 636 aa24.6■■□□□ 1.53
CLN3-232ENST00000568443 GBP2P32456 591 aaPredicted RBP24.59■■□□□ 1.53
CLN3-232ENST00000568443 ZPBP2Q6X784 338 aa24.59■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms