RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 PRPF6O94906 941 aaKnown RBP10.71□□□□□ -0.69
CLK3-220ENST00000567992 PRR29P0C7W0 189 aa10.71□□□□□ -0.69
CLK3-220ENST00000567992 CXCL8P10145 99 aa10.71□□□□□ -0.69
CLK3-220ENST00000567992 ALDH7A1P49419 539 aaKnown RBP10.71□□□□□ -0.69
CLK3-220ENST00000567992 SOX4Q06945 474 aaPredicted RBP10.71□□□□□ -0.69
CLK3-220ENST00000567992 HYAL1Q12794 435 aa10.71□□□□□ -0.69
CLK3-220ENST00000567992 TUSC3Q13454 348 aa10.71□□□□□ -0.69
CLK3-220ENST00000567992 SNW1Q13573 536 aaKnown RBP10.71□□□□□ -0.69
CLK3-220ENST00000567992 ALCAMQ13740 583 aa10.71□□□□□ -0.69
CLK3-220ENST00000567992 SLC10A6Q3KNW5 377 aa10.71□□□□□ -0.69
CLK3-220ENST00000567992 TPRNQ4KMQ1 711 aa10.71□□□□□ -0.69
CLK3-220ENST00000567992 FAM26FQ5R3K3 315 aa10.71□□□□□ -0.69
CLK3-220ENST00000567992 KRBA2Q6ZNG9 492 aa10.71□□□□□ -0.69
CLK3-220ENST00000567992 DDX53Q86TM3 631 aaKnown RBP10.71□□□□□ -0.69
CLK3-220ENST00000567992 FMR1NBQ8N0W7 255 aaPredicted RBP10.71□□□□□ -0.69
CLK3-220ENST00000567992 TMEM87AQ8NBN3 555 aa10.71□□□□□ -0.69
CLK3-220ENST00000567992 TMEM169Q96HH4 297 aa10.71□□□□□ -0.69
CLK3-220ENST00000567992 FAM193BQ96PV7 902 aaPredicted RBP10.71□□□□□ -0.69
CLK3-220ENST00000567992 RPS6KC1Q96S38 1066 aa10.71□□□□□ -0.69
CLK3-220ENST00000567992 ANP32EQ9BTT0 268 aa10.71□□□□□ -0.69
CLK3-220ENST00000567992 CCDC94Q9BW85 323 aaPredicted RBP10.71□□□□□ -0.69
CLK3-220ENST00000567992 ZBP1Q9H171 429 aa10.71□□□□□ -0.69
CLK3-220ENST00000567992 CHMP5Q9NZZ3 219 aa10.71□□□□□ -0.69
CLK3-220ENST00000567992 CNTN3Q9P232 1028 aa10.71□□□□□ -0.69
CLK3-220ENST00000567992 PRG3Q9Y2Y8 225 aaPredicted RBP10.71□□□□□ -0.69
CLK3-220ENST00000567992 C5orf42Q9H799 3197 aa10.71□□□□□ -0.7
CLK3-220ENST00000567992 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.7□□□□□ -0.7
CLK3-220ENST00000567992 SMIM28A0A1B0GU29 152 aa10.7□□□□□ -0.7
CLK3-220ENST00000567992 PVALEFA0A1B0GWK0 134 aa10.7□□□□□ -0.7
CLK3-220ENST00000567992 TTC26A0AVF1 554 aa10.7□□□□□ -0.7
CLK3-220ENST00000567992 CARNS1A5YM72 827 aa10.7□□□□□ -0.7
CLK3-220ENST00000567992 CASTOR2A6NHX0 329 aa10.7□□□□□ -0.7
CLK3-220ENST00000567992 HIDE1A8MVS5 230 aa10.7□□□□□ -0.7
CLK3-220ENST00000567992 OGTO15294 1046 aa10.7□□□□□ -0.7
CLK3-220ENST00000567992 ZNF202O95125 648 aa10.7□□□□□ -0.7
CLK3-220ENST00000567992 THP07101 528 aa10.7□□□□□ -0.7
CLK3-220ENST00000567992 ADRB2P07550 413 aa10.7□□□□□ -0.7
CLK3-220ENST00000567992 KCNE1P15382 129 aa10.7□□□□□ -0.7
CLK3-220ENST00000567992 IGFBP6P24592 240 aaPredicted RBP10.7□□□□□ -0.7
CLK3-220ENST00000567992 GTF2F1P35269 517 aaKnown RBP eCLIP10.7□□□□□ -0.7
CLK3-220ENST00000567992 DPYDQ12882 1025 aa10.7□□□□□ -0.7
CLK3-220ENST00000567992 ENOX2Q16206 610 aaKnown RBP10.7□□□□□ -0.7
CLK3-220ENST00000567992 BMT2Q1RMZ1 405 aa10.7□□□□□ -0.7
CLK3-220ENST00000567992 CD300LGQ6UXG3 332 aa10.7□□□□□ -0.7
CLK3-220ENST00000567992 CRELD2Q6UXH1 353 aaPredicted RBP10.7□□□□□ -0.7
CLK3-220ENST00000567992 TMEM130Q8N3G9 435 aa10.7□□□□□ -0.7
CLK3-220ENST00000567992 ZSWIM2Q8NEG5 633 aa10.7□□□□□ -0.7
CLK3-220ENST00000567992 SCFD1Q8WVM8 642 aa10.7□□□□□ -0.7
CLK3-220ENST00000567992 RABGGTAQ92696 567 aa10.7□□□□□ -0.7
CLK3-220ENST00000567992 ACAP3Q96P50 834 aa10.7□□□□□ -0.7
CLK3-220ENST00000567992 ACCSQ96QU6 501 aa10.7□□□□□ -0.7
CLK3-220ENST00000567992 TCF25Q9BQ70 676 aa10.7□□□□□ -0.7
CLK3-220ENST00000567992 MSTO1Q9BUK6 570 aa10.7□□□□□ -0.7
CLK3-220ENST00000567992 TOPORSQ9NS56 1045 aaPredicted RBP10.7□□□□□ -0.7
CLK3-220ENST00000567992 CPSF3Q9UKF6 684 aaKnown RBP10.7□□□□□ -0.7
CLK3-220ENST00000567992 FAN1Q9Y2M0 1017 aa10.7□□□□□ -0.7
CLK3-220ENST00000567992 PCDHB13Q9Y5F0 798 aa10.7□□□□□ -0.7
CLK3-220ENST00000567992 MUC3AQ02505 3323 aa10.69□□□□□ -0.7
CLK3-220ENST00000567992 UBE4BO95155 1302 aa10.69□□□□□ -0.7
CLK3-220ENST00000567992 C2orf71A6NGG8 1288 aa10.69□□□□□ -0.7
CLK3-220ENST00000567992 EIF3DO15371 548 aaKnown RBP eCLIP10.69□□□□□ -0.7
CLK3-220ENST00000567992 GADD45BO75293 160 aaPredicted RBP10.69□□□□□ -0.7
CLK3-220ENST00000567992 KIF4AO95239 1232 aa10.69□□□□□ -0.7
CLK3-220ENST00000567992 ALDH2P05091 517 aa10.69□□□□□ -0.7
CLK3-220ENST00000567992 MYL1P05976 194 aa10.69□□□□□ -0.7
CLK3-220ENST00000567992 CLTAP09496 248 aa10.69□□□□□ -0.7
CLK3-220ENST00000567992 CTSAP10619 480 aa10.69□□□□□ -0.7
CLK3-220ENST00000567992 LTBRP36941 435 aa10.69□□□□□ -0.7
CLK3-220ENST00000567992 OR1G1P47890 313 aa10.69□□□□□ -0.7
CLK3-220ENST00000567992 YARSP54577 528 aaKnown RBP10.69□□□□□ -0.7
CLK3-220ENST00000567992 KRT17Q04695 432 aa10.69□□□□□ -0.7
CLK3-220ENST00000567992 HSP90AA2PQ14568 343 aaPredicted RBP10.69□□□□□ -0.7
CLK3-220ENST00000567992 PTPN14Q15678 1187 aa10.69□□□□□ -0.7
CLK3-220ENST00000567992 CTC1Q2NKJ3 1217 aa10.69□□□□□ -0.7
CLK3-220ENST00000567992 KMT5BQ4FZB7 885 aa10.69□□□□□ -0.7
CLK3-220ENST00000567992 PLPP4Q5VZY2 271 aa10.69□□□□□ -0.7
CLK3-220ENST00000567992 TAS1R1Q7RTX1 841 aa10.69□□□□□ -0.7
CLK3-220ENST00000567992 KIAA0895Q8NCT3 520 aa10.69□□□□□ -0.7
CLK3-220ENST00000567992 C3orf58Q8NDZ4 430 aa10.69□□□□□ -0.7
CLK3-220ENST00000567992 ZNF507Q8TCN5 953 aa10.69□□□□□ -0.7
CLK3-220ENST00000567992 AUTS2Q8WXX7 1259 aa10.69□□□□□ -0.7
CLK3-220ENST00000567992 C18orf25Q96B23 403 aaPredicted RBP10.69□□□□□ -0.7
CLK3-220ENST00000567992 CBWD1Q9BRT8 395 aa10.69□□□□□ -0.7
CLK3-220ENST00000567992 HERC2P3Q9BVR0 1158 aa10.69□□□□□ -0.7
CLK3-220ENST00000567992 GOLGA2P5Q9HBQ8 144 aa10.69□□□□□ -0.7
CLK3-220ENST00000567992 ENTPD7Q9NQZ7 604 aa10.69□□□□□ -0.7
CLK3-220ENST00000567992 TUBGCP4Q9UGJ1 667 aa10.69□□□□□ -0.7
CLK3-220ENST00000567992 PLXNA3P51805 1871 aa10.68□□□□□ -0.7
CLK3-220ENST00000567992 TSC2P49815 1807 aa10.68□□□□□ -0.7
CLK3-220ENST00000567992 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.68□□□□□ -0.7
CLK3-220ENST00000567992 LACTBL1A8MY62 500 aa10.68□□□□□ -0.7
CLK3-220ENST00000567992 TMEM189-UBE2V1I3L0A0 370 aa10.68□□□□□ -0.7
CLK3-220ENST00000567992 LINC01565O15544 149 aa10.68□□□□□ -0.7
CLK3-220ENST00000567992 TGFB1I1O43294 461 aa10.68□□□□□ -0.7
CLK3-220ENST00000567992 LILRB3O75022 631 aa10.68□□□□□ -0.7
CLK3-220ENST00000567992 TBX10O75333 385 aa10.68□□□□□ -0.7
CLK3-220ENST00000567992 GLP2RO95838 553 aa10.68□□□□□ -0.7
CLK3-220ENST00000567992 SOD2P04179 222 aa10.68□□□□□ -0.7
CLK3-220ENST00000567992 MATR3P43243 847 aaKnown RBP eCLIP10.68□□□□□ -0.7
CLK3-220ENST00000567992 ACOT2P49753 483 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms