RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 TNFSF13BQ9Y275 285 aa20.6■□□□□ 0.89
CLN3-218ENST00000565688 ZFHX2Q9C0A1 2572 aaPredicted RBP20.59■□□□□ 0.89
CLN3-218ENST00000565688 ZMYND10O75800 440 aa20.59■□□□□ 0.89
CLN3-218ENST00000565688 DMP1Q13316 513 aaPredicted RBP20.59■□□□□ 0.89
CLN3-218ENST00000565688 PSMD5Q16401 504 aa20.59■□□□□ 0.89
CLN3-218ENST00000565688 C8orf34Q49A92 452 aa20.59■□□□□ 0.89
CLN3-218ENST00000565688 DTHD1Q6ZMT9 781 aa20.59■□□□□ 0.89
CLN3-218ENST00000565688 LNX1Q8TBB1 728 aaPredicted RBP20.59■□□□□ 0.89
CLN3-218ENST00000565688 DRC1Q96MC2 740 aa20.59■□□□□ 0.89
CLN3-218ENST00000565688 UROC1Q96N76 676 aa20.59■□□□□ 0.89
CLN3-218ENST00000565688 POLD4Q9HCU8 107 aa20.59■□□□□ 0.89
CLN3-218ENST00000565688 FBXL21Q9UKT6 434 aa20.59■□□□□ 0.89
CLN3-218ENST00000565688 MTCL1Q9Y4B5 1905 aaKnown RBP20.59■□□□□ 0.89
CLN3-218ENST00000565688 CCDC169A6NNP5 214 aa20.58■□□□□ 0.89
CLN3-218ENST00000565688 TMEM189-UBE2V1I3L0A0 370 aa20.58■□□□□ 0.89
CLN3-218ENST00000565688 ST18O60284 1047 aa20.58■□□□□ 0.89
CLN3-218ENST00000565688 HNRNPA1P09651 372 aaKnown RBP eCLIP20.58■□□□□ 0.89
CLN3-218ENST00000565688 NPTX2P47972 431 aa20.58■□□□□ 0.89
CLN3-218ENST00000565688 RABEP1Q15276 862 aa20.58■□□□□ 0.89
CLN3-218ENST00000565688 LIN9Q5TKA1 542 aa20.58■□□□□ 0.89
CLN3-218ENST00000565688 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.58■□□□□ 0.89
CLN3-218ENST00000565688 PPP1R10Q96QC0 940 aaKnown RBP20.58■□□□□ 0.89
CLN3-218ENST00000565688 MYADMQ96S97 322 aa20.58■□□□□ 0.89
CLN3-218ENST00000565688 CLSTN3Q9BQT9 956 aa20.58■□□□□ 0.89
CLN3-218ENST00000565688 TMEM134Q9H6X4 195 aa20.58■□□□□ 0.89
CLN3-218ENST00000565688 C17orf75Q9HAS0 396 aa20.58■□□□□ 0.89
CLN3-218ENST00000565688 TOPORSQ9NS56 1045 aaPredicted RBP20.58■□□□□ 0.89
CLN3-218ENST00000565688 FBXW11Q9UKB1 542 aa20.58■□□□□ 0.89
CLN3-218ENST00000565688 RBM19Q9Y4C8 960 aaKnown RBP20.58■□□□□ 0.89
CLN3-218ENST00000565688 USP34Q70CQ2 3546 aa20.58■□□□□ 0.88
CLN3-218ENST00000565688 E9PMD0 336 aa20.57■□□□□ 0.88
CLN3-218ENST00000565688 H0Y858 1186 aa20.57■□□□□ 0.88
CLN3-218ENST00000565688 TRAPPC3O43617 180 aa20.57■□□□□ 0.88
CLN3-218ENST00000565688 CENPBP07199 599 aaPredicted RBP20.57■□□□□ 0.88
CLN3-218ENST00000565688 YARSP54577 528 aaKnown RBP20.57■□□□□ 0.88
CLN3-218ENST00000565688 PEX3P56589 373 aa20.57■□□□□ 0.88
CLN3-218ENST00000565688 RILPL1Q5EBL4 403 aa20.57■□□□□ 0.88
CLN3-218ENST00000565688 DCLRE1AQ6PJP8 1040 aa20.57■□□□□ 0.88
CLN3-218ENST00000565688 KCTD17Q8N5Z5 321 aa20.57■□□□□ 0.88
CLN3-218ENST00000565688 FLCNQ8NFG4 579 aa20.57■□□□□ 0.88
CLN3-218ENST00000565688 ACO2Q99798 780 aaKnown RBP20.57■□□□□ 0.88
CLN3-218ENST00000565688 TIPINQ9BVW5 301 aa20.57■□□□□ 0.88
CLN3-218ENST00000565688 CCDC94Q9BW85 323 aaPredicted RBP20.57■□□□□ 0.88
CLN3-218ENST00000565688 MRPL4Q9BYD3 311 aaKnown RBP20.57■□□□□ 0.88
CLN3-218ENST00000565688 CXCL16Q9H2A7 254 aa20.57■□□□□ 0.88
CLN3-218ENST00000565688 EIF4ENIF1Q9NRA8 985 aaKnown RBP20.57■□□□□ 0.88
CLN3-218ENST00000565688 FAM86C1Q9NVL1 165 aa20.57■□□□□ 0.88
CLN3-218ENST00000565688 WNT16Q9UBV4 365 aa20.57■□□□□ 0.88
CLN3-218ENST00000565688 ZFP37Q9Y6Q3 630 aaPredicted RBP20.57■□□□□ 0.88
CLN3-218ENST00000565688 HIP1RO75146 1068 aa20.56■□□□□ 0.88
CLN3-218ENST00000565688 B3GAT3O94766 335 aa20.56■□□□□ 0.88
CLN3-218ENST00000565688 LAMP2P13473 410 aa20.56■□□□□ 0.88
CLN3-218ENST00000565688 HOXA9P31269 272 aa20.56■□□□□ 0.88
CLN3-218ENST00000565688 GRM5P41594 1212 aa20.56■□□□□ 0.88
CLN3-218ENST00000565688 MCTP1Q6DN14 999 aa20.56■□□□□ 0.88
CLN3-218ENST00000565688 SIX5Q8N196 739 aa20.56■□□□□ 0.88
CLN3-218ENST00000565688 SLC44A3Q8N4M1 653 aa20.56■□□□□ 0.88
CLN3-218ENST00000565688 KMT5AQ9NQR1 393 aa20.56■□□□□ 0.88
CLN3-218ENST00000565688 ARHGAP28Q9P2N2 729 aa20.56■□□□□ 0.88
CLN3-218ENST00000565688 KCNG1Q9UIX4 513 aa20.56■□□□□ 0.88
CLN3-218ENST00000565688 PP2D1A8MPX8 630 aa20.55■□□□□ 0.88
CLN3-218ENST00000565688 AOC1P19801 751 aa20.55■□□□□ 0.88
CLN3-218ENST00000565688 FGFR3P22607 806 aa20.55■□□□□ 0.88
CLN3-218ENST00000565688 FSHRP23945 695 aa20.55■□□□□ 0.88
CLN3-218ENST00000565688 RAB33AQ14088 237 aa20.55■□□□□ 0.88
CLN3-218ENST00000565688 IL17AQ16552 155 aa20.55■□□□□ 0.88
CLN3-218ENST00000565688 UPP1Q16831 310 aa20.55■□□□□ 0.88
CLN3-218ENST00000565688 ZNF568Q3ZCX4 644 aa20.55■□□□□ 0.88
CLN3-218ENST00000565688 GLRA4Q5JXX5 417 aa20.55■□□□□ 0.88
CLN3-218ENST00000565688 PPM1LQ5SGD2 360 aa20.55■□□□□ 0.88
CLN3-218ENST00000565688 CWF19L1Q69YN2 538 aaKnown RBP20.55■□□□□ 0.88
CLN3-218ENST00000565688 RINT1Q6NUQ1 792 aa20.55■□□□□ 0.88
CLN3-218ENST00000565688 C1orf186Q6ZWK4 172 aa20.55■□□□□ 0.88
CLN3-218ENST00000565688 RTL10Q7L3V2 364 aa20.55■□□□□ 0.88
CLN3-218ENST00000565688 GET4Q7L5D6 327 aaPredicted RBP20.55■□□□□ 0.88
CLN3-218ENST00000565688 DAW1Q8N136 415 aa20.55■□□□□ 0.88
CLN3-218ENST00000565688 RSAD2Q8WXG1 361 aa20.55■□□□□ 0.88
CLN3-218ENST00000565688 RTP3Q9BQQ7 232 aa20.55■□□□□ 0.88
CLN3-218ENST00000565688 RUSC1Q9BVN2 902 aa20.55■□□□□ 0.88
CLN3-218ENST00000565688 PTPRHQ9HD43 1115 aa20.55■□□□□ 0.88
CLN3-218ENST00000565688 SLC38A7Q9NVC3 462 aa20.55■□□□□ 0.88
CLN3-218ENST00000565688 SMIM28A0A1B0GU29 152 aa20.54■□□□□ 0.88
CLN3-218ENST00000565688 NARSO43776 548 aaKnown RBP20.54■□□□□ 0.88
CLN3-218ENST00000565688 XYLBO75191 536 aa20.54■□□□□ 0.88
CLN3-218ENST00000565688 C8AP07357 584 aa20.54■□□□□ 0.88
CLN3-218ENST00000565688 SRFP11831 508 aa20.54■□□□□ 0.88
CLN3-218ENST00000565688 NPR3P17342 541 aa20.54■□□□□ 0.88
CLN3-218ENST00000565688 CDC25AP30304 524 aa20.54■□□□□ 0.88
CLN3-218ENST00000565688 CLCNKBP51801 687 aa20.54■□□□□ 0.88
CLN3-218ENST00000565688 UVSSAQ2YD98 709 aa20.54■□□□□ 0.88
CLN3-218ENST00000565688 XKR4Q5GH76 650 aa20.54■□□□□ 0.88
CLN3-218ENST00000565688 DDX27Q96GQ7 796 aaKnown RBP20.54■□□□□ 0.88
CLN3-218ENST00000565688 MMTAG2Q9BU76 263 aaKnown RBP20.54■□□□□ 0.88
CLN3-218ENST00000565688 CDT1Q9H211 546 aa20.54■□□□□ 0.88
CLN3-218ENST00000565688 MTRRQ9UBK8 725 aa20.54■□□□□ 0.88
CLN3-218ENST00000565688 PROB1E7EW31 1015 aa20.53■□□□□ 0.88
CLN3-218ENST00000565688 ANHXE9PGG2 379 aa20.53■□□□□ 0.88
CLN3-218ENST00000565688 GFRA3O60609 400 aa20.53■□□□□ 0.88
CLN3-218ENST00000565688 POU2F2P09086 479 aa20.53■□□□□ 0.88
CLN3-218ENST00000565688 MCF2P10911 925 aa20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms