RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 CLSTN3Q9BQT9 956 aa16.33■□□□□ 0.2
CLN3-213ENST00000565047 HAPLN2Q9GZV7 340 aa16.33■□□□□ 0.2
CLN3-213ENST00000565047 WDFY4Q6ZS81 3184 aa16.33■□□□□ 0.2
CLN3-213ENST00000565047 DENND4AQ7Z401 1863 aa16.33■□□□□ 0.2
CLN3-213ENST00000565047 SF3B1O75533 1304 aaKnown RBP eCLIP16.32■□□□□ 0.23e-9■■■■■ 164.7
CLN3-213ENST00000565047 ADH1AP07327 375 aa16.32■□□□□ 0.2
CLN3-213ENST00000565047 MCF2P10911 925 aa16.32■□□□□ 0.2
CLN3-213ENST00000565047 PDCP20941 246 aa16.32■□□□□ 0.2
CLN3-213ENST00000565047 CACNB1Q02641 598 aaPredicted RBP16.32■□□□□ 0.2
CLN3-213ENST00000565047 PTPN21Q16825 1174 aa16.32■□□□□ 0.2
CLN3-213ENST00000565047 UPP1Q16831 310 aa16.32■□□□□ 0.2
CLN3-213ENST00000565047 FAM173BQ6P4H8 233 aa16.32■□□□□ 0.2
CLN3-213ENST00000565047 TMEM87AQ8NBN3 555 aa16.32■□□□□ 0.2
CLN3-213ENST00000565047 HASPINQ8TF76 798 aa16.32■□□□□ 0.2
CLN3-213ENST00000565047 HDAC7Q8WUI4 952 aa16.32■□□□□ 0.2
CLN3-213ENST00000565047 PIK3R5Q8WYR1 880 aa16.32■□□□□ 0.2
CLN3-213ENST00000565047 ZNF707Q96C28 371 aaPredicted RBP16.32■□□□□ 0.2
CLN3-213ENST00000565047 CCSER1Q9C0I3 900 aa16.32■□□□□ 0.2
CLN3-213ENST00000565047 MAN1C1Q9NR34 630 aa16.32■□□□□ 0.2
CLN3-213ENST00000565047 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.32■□□□□ 0.2
CLN3-213ENST00000565047 KCNG1Q9UIX4 513 aa16.32■□□□□ 0.2
CLN3-213ENST00000565047 FBXO2Q9UK22 296 aaPredicted RBP16.32■□□□□ 0.2
CLN3-213ENST00000565047 MTMR6Q9Y217 621 aa16.32■□□□□ 0.2
CLN3-213ENST00000565047 USTQ9Y2C2 406 aa16.32■□□□□ 0.2
CLN3-213ENST00000565047 MORC2Q9Y6X9 1032 aaPredicted RBP16.32■□□□□ 0.2
CLN3-213ENST00000565047 TGM5O43548 720 aa16.31■□□□□ 0.2
CLN3-213ENST00000565047 KCNE1P15382 129 aa16.31■□□□□ 0.2
CLN3-213ENST00000565047 PLCG1P19174 1290 aa16.31■□□□□ 0.2
CLN3-213ENST00000565047 SP100P23497 879 aaPredicted RBP16.31■□□□□ 0.2
CLN3-213ENST00000565047 KARSQ15046 597 aaKnown RBP16.31■□□□□ 0.2
CLN3-213ENST00000565047 TMEM132AQ24JP5 1023 aa16.31■□□□□ 0.2
CLN3-213ENST00000565047 ZNF568Q3ZCX4 644 aa16.31■□□□□ 0.2
CLN3-213ENST00000565047 GLRA4Q5JXX5 417 aa16.31■□□□□ 0.2
CLN3-213ENST00000565047 PRSS55Q6UWB4 352 aaPredicted RBP16.31■□□□□ 0.2
CLN3-213ENST00000565047 MPZL3Q6UWV2 235 aa16.31■□□□□ 0.2
CLN3-213ENST00000565047 ZPBP2Q6X784 338 aa16.31■□□□□ 0.2
CLN3-213ENST00000565047 ZDHHC14Q8IZN3 488 aa16.31■□□□□ 0.2
CLN3-213ENST00000565047 C3orf58Q8NDZ4 430 aa16.31■□□□□ 0.2
CLN3-213ENST00000565047 RIN2Q8WYP3 895 aaPredicted RBP16.31■□□□□ 0.2
CLN3-213ENST00000565047 SNX27Q96L92 541 aa16.31■□□□□ 0.2
CLN3-213ENST00000565047 REEP2Q9BRK0 252 aa16.31■□□□□ 0.2
CLN3-213ENST00000565047 CNTN3Q9P232 1028 aa16.31■□□□□ 0.2
CLN3-213ENST00000565047 ODF2LQ9ULJ1 636 aa16.31■□□□□ 0.2
CLN3-213ENST00000565047 NR2E1Q9Y466 385 aa16.31■□□□□ 0.2
CLN3-213ENST00000565047 C2orf16Q68DN1 1984 aa16.3■□□□□ 0.2
CLN3-213ENST00000565047 VWA8A3KMH1 1905 aa16.3■□□□□ 0.2
CLN3-213ENST00000565047 VPS37CA5D8V6 355 aaPredicted RBP16.3■□□□□ 0.2
CLN3-213ENST00000565047 ADAM12O43184 909 aa16.3■□□□□ 0.2
CLN3-213ENST00000565047 N4BP1O75113 896 aaKnown RBP16.3■□□□□ 0.2
CLN3-213ENST00000565047 TOM1L1O75674 476 aa16.3■□□□□ 0.2
CLN3-213ENST00000565047 RFPL2O75678 378 aa16.3■□□□□ 0.2
CLN3-213ENST00000565047 GLUD1P00367 558 aa16.3■□□□□ 0.2
CLN3-213ENST00000565047 RPL17P18621 184 aaKnown RBP16.3■□□□□ 0.2
CLN3-213ENST00000565047 FGFR3P22607 806 aa16.3■□□□□ 0.2
CLN3-213ENST00000565047 UBA7P41226 1012 aa16.3■□□□□ 0.2
CLN3-213ENST00000565047 CLCNKBP51801 687 aa16.3■□□□□ 0.2
CLN3-213ENST00000565047 MCL1Q07820 350 aa16.3■□□□□ 0.2
CLN3-213ENST00000565047 MCM6Q14566 821 aa16.3■□□□□ 0.2
CLN3-213ENST00000565047 SLC10A6Q3KNW5 377 aa16.3■□□□□ 0.2
CLN3-213ENST00000565047 FAM171A1Q5VUB5 890 aa16.3■□□□□ 0.2
CLN3-213ENST00000565047 DCLRE1AQ6PJP8 1040 aa16.3■□□□□ 0.2
CLN3-213ENST00000565047 CYP26C1Q6V0L0 522 aa16.3■□□□□ 0.2
CLN3-213ENST00000565047 ZBTB33Q86T24 672 aa16.3■□□□□ 0.2
CLN3-213ENST00000565047 PALB2Q86YC2 1186 aa16.3■□□□□ 0.2
CLN3-213ENST00000565047 RAD54LQ92698 747 aa16.3■□□□□ 0.2
CLN3-213ENST00000565047 EPSTI1Q96J88 318 aa16.3■□□□□ 0.2
CLN3-213ENST00000565047 TTPALQ9BTX7 342 aa16.3■□□□□ 0.2
CLN3-213ENST00000565047 GOLGA2P5Q9HBQ8 144 aa16.3■□□□□ 0.2
CLN3-213ENST00000565047 SRPRBQ9Y5M8 271 aaKnown RBP16.3■□□□□ 0.2
CLN3-213ENST00000565047 TRIP11Q15643 1979 aa16.29■□□□□ 0.2
CLN3-213ENST00000565047 CCDC195A0A1B0GUA6 201 aa16.29■□□□□ 0.2
CLN3-213ENST00000565047 TMEM221A6NGB7 291 aa16.29■□□□□ 0.2
CLN3-213ENST00000565047 K7ELQ4 463 aaPredicted RBP16.29■□□□□ 0.2
CLN3-213ENST00000565047 M0R296 226 aa16.29■□□□□ 0.2
CLN3-213ENST00000565047 FAM189A1O60320 539 aa16.29■□□□□ 0.2
CLN3-213ENST00000565047 PIGRP01833 764 aa16.29■□□□□ 0.2
CLN3-213ENST00000565047 SPATA31D3P0C874 917 aa16.29■□□□□ 0.2
CLN3-213ENST00000565047 DDIT3P35638 169 aa16.29■□□□□ 0.2
CLN3-213ENST00000565047 SMTNP53814 917 aa16.29■□□□□ 0.2
CLN3-213ENST00000565047 OSTNP61366 133 aa16.29■□□□□ 0.2
CLN3-213ENST00000565047 SIGLEC14Q08ET2 396 aa16.29■□□□□ 0.2
CLN3-213ENST00000565047 RSPO2Q6UXX9 243 aaPredicted RBP16.29■□□□□ 0.2
CLN3-213ENST00000565047 SPATA31D4Q6ZUB0 917 aa16.29■□□□□ 0.2
CLN3-213ENST00000565047 HAUS6Q7Z4H7 955 aa16.29■□□□□ 0.2
CLN3-213ENST00000565047 APBB1IPQ7Z5R6 666 aaPredicted RBP16.29■□□□□ 0.2
CLN3-213ENST00000565047 GPBP1Q86WP2 473 aa16.29■□□□□ 0.2
CLN3-213ENST00000565047 SNX21Q969T3 373 aa16.29■□□□□ 0.2
CLN3-213ENST00000565047 CALML4Q96GE6 196 aa16.29■□□□□ 0.2
CLN3-213ENST00000565047 CDK5RAP3Q96JB5 506 aa16.29■□□□□ 0.2
CLN3-213ENST00000565047 UROC1Q96N76 676 aa16.29■□□□□ 0.2
CLN3-213ENST00000565047 CCDC94Q9BW85 323 aaPredicted RBP16.29■□□□□ 0.2
CLN3-213ENST00000565047 PLEKHA4Q9H4M7 779 aa16.29■□□□□ 0.2
CLN3-213ENST00000565047 LARSQ9P2J5 1176 aaKnown RBP16.29■□□□□ 0.2
CLN3-213ENST00000565047 ZNF318Q5VUA4 2279 aa16.28■□□□□ 0.2
CLN3-213ENST00000565047 MTCL1Q9Y4B5 1905 aaKnown RBP16.28■□□□□ 0.2
CLN3-213ENST00000565047 B3GAT3O94766 335 aa16.28■□□□□ 0.2
CLN3-213ENST00000565047 MARCKSP29966 332 aaPredicted RBP16.28■□□□□ 0.2
CLN3-213ENST00000565047 PLA2G5P39877 138 aa16.28■□□□□ 0.2
CLN3-213ENST00000565047 SEZ6Q53EL9 994 aa16.28■□□□□ 0.2
CLN3-213ENST00000565047 SPECC1Q5M775 1068 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms