RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 THG1LQ9NWX6 298 aaKnown RBP5.81□□□□□ -1.48
VPS35-205ENST00000563984 CLIC5Q9NZA1 410 aa5.81□□□□□ -1.48
VPS35-205ENST00000563984 H2AFY2Q9P0M6 372 aaPredicted RBP5.81□□□□□ -1.48
VPS35-205ENST00000563984 C6orf203Q9P0P8 240 aaPredicted RBP5.81□□□□□ -1.48
VPS35-205ENST00000563984 CALCOCO1Q9P1Z2 691 aa5.81□□□□□ -1.48
VPS35-205ENST00000563984 USP36Q9P275 1121 aaKnown RBP5.81□□□□□ -1.48
VPS35-205ENST00000563984 EVLQ9UI08 416 aaPredicted RBP5.81□□□□□ -1.48
VPS35-205ENST00000563984 XPO7Q9UIA9 1087 aaKnown RBP5.81□□□□□ -1.48
VPS35-205ENST00000563984 FBXO2Q9UK22 296 aaPredicted RBP5.81□□□□□ -1.48
VPS35-205ENST00000563984 SUFUQ9UMX1 484 aa5.81□□□□□ -1.48
VPS35-205ENST00000563984 GTPBP10A4D1E9 387 aaKnown RBP5.8□□□□□ -1.48
VPS35-205ENST00000563984 TSPAN7P41732 249 aa5.8□□□□□ -1.48
VPS35-205ENST00000563984 IRX1P78414 480 aaPredicted RBP5.8□□□□□ -1.48
VPS35-205ENST00000563984 SMAD3P84022 425 aaKnown RBP5.8□□□□□ -1.48
VPS35-205ENST00000563984 SIM2Q14190 667 aaPredicted RBP5.8□□□□□ -1.48
VPS35-205ENST00000563984 MYBPC3Q14896 1274 aa5.8□□□□□ -1.48
VPS35-205ENST00000563984 SLMAPQ14BN4 828 aa5.8□□□□□ -1.48
VPS35-205ENST00000563984 PPP2R5AQ15172 486 aa5.8□□□□□ -1.48
VPS35-205ENST00000563984 TAF7Q15545 349 aaPredicted RBP5.8□□□□□ -1.48
VPS35-205ENST00000563984 PARP10Q53GL7 1025 aa5.8□□□□□ -1.48
VPS35-205ENST00000563984 COBLL1Q53SF7 1204 aa5.8□□□□□ -1.48
VPS35-205ENST00000563984 FAM133BQ5BKY9 247 aaKnown RBP5.8□□□□□ -1.48
VPS35-205ENST00000563984 DNAJC21Q5F1R6 531 aaKnown RBP5.8□□□□□ -1.48
VPS35-205ENST00000563984 KIAA1841Q6NSI8 718 aa5.8□□□□□ -1.48
VPS35-205ENST00000563984 HDGFL2Q7Z4V5 671 aaPredicted RBP5.8□□□□□ -1.48
VPS35-205ENST00000563984 CCDC91Q7Z6B0 441 aa5.8□□□□□ -1.48
VPS35-205ENST00000563984 C11orf74Q86VG3 221 aa5.8□□□□□ -1.48
VPS35-205ENST00000563984 SHCBP1Q8NEM2 672 aa5.8□□□□□ -1.48
VPS35-205ENST00000563984 OR2W6PQ8NHA6 318 aa5.8□□□□□ -1.48
VPS35-205ENST00000563984 GABPB2Q8TAK5 448 aaPredicted RBP5.8□□□□□ -1.48
VPS35-205ENST00000563984 RTF1Q92541 710 aaKnown RBP5.8□□□□□ -1.48
VPS35-205ENST00000563984 N4BP2L2Q92802 583 aaPredicted RBP5.8□□□□□ -1.48
VPS35-205ENST00000563984 GCDHQ92947 438 aaPredicted RBP5.8□□□□□ -1.48
VPS35-205ENST00000563984 TBC1D31Q96DN5 1066 aa5.8□□□□□ -1.48
VPS35-205ENST00000563984 DYDC2Q96IM9 177 aa5.8□□□□□ -1.48
VPS35-205ENST00000563984 PAWRQ96IZ0 340 aaKnown RBP5.8□□□□□ -1.48
VPS35-205ENST00000563984 TYW1Q9NV66 732 aaKnown RBP5.8□□□□□ -1.48
VPS35-205ENST00000563984 POLR3BQ9NW08 1133 aaPredicted RBP5.8□□□□□ -1.48
VPS35-205ENST00000563984 PLA2G3Q9NZ20 509 aa5.8□□□□□ -1.48
VPS35-205ENST00000563984 ZNF69Q9UC07 566 aa5.8□□□□□ -1.48
VPS35-205ENST00000563984 PCSK1NQ9UHG2 260 aa5.8□□□□□ -1.48
VPS35-205ENST00000563984 MAGEL2Q9UJ55 1249 aa5.8□□□□□ -1.48
VPS35-205ENST00000563984 PRKAB1Q9Y478 270 aa5.8□□□□□ -1.48
VPS35-205ENST00000563984 A0A0A6YYJ9 748 aa5.79□□□□□ -1.48
VPS35-205ENST00000563984 FIBPO43427 364 aa5.79□□□□□ -1.48
VPS35-205ENST00000563984 TGM5O43548 720 aa5.79□□□□□ -1.48
VPS35-205ENST00000563984 BBOX1O75936 387 aa5.79□□□□□ -1.48
VPS35-205ENST00000563984 KRT18P05783 430 aaKnown RBP5.79□□□□□ -1.48
VPS35-205ENST00000563984 KIF5BP33176 963 aa5.79□□□□□ -1.48
VPS35-205ENST00000563984 ADCY7P51828 1080 aa5.79□□□□□ -1.48
VPS35-205ENST00000563984 PHC1P78364 1004 aa5.79□□□□□ -1.48
VPS35-205ENST00000563984 GRM7Q14831 915 aa5.79□□□□□ -1.48
VPS35-205ENST00000563984 KRT72Q14CN4 511 aa5.79□□□□□ -1.48
VPS35-205ENST00000563984 TMEM95Q3KNT9 176 aa5.79□□□□□ -1.48
VPS35-205ENST00000563984 WDR75Q8IWA0 830 aaKnown RBP5.79□□□□□ -1.48
VPS35-205ENST00000563984 GPR135Q8IZ08 494 aa5.79□□□□□ -1.48
VPS35-205ENST00000563984 ZFPM2Q8WW38 1151 aa5.79□□□□□ -1.48
VPS35-205ENST00000563984 FAM89AQ96GI7 184 aa5.79□□□□□ -1.48
VPS35-205ENST00000563984 SLC39A13Q96H72 371 aa5.79□□□□□ -1.48
VPS35-205ENST00000563984 ZNF496Q96IT1 587 aaPredicted RBP5.79□□□□□ -1.48
VPS35-205ENST00000563984 WDR92Q96MX6 357 aa5.79□□□□□ -1.48
VPS35-205ENST00000563984 GSDMAQ96QA5 445 aa5.79□□□□□ -1.48
VPS35-205ENST00000563984 ADOQ96SZ5 270 aa5.79□□□□□ -1.48
VPS35-205ENST00000563984 SLX1AQ9BQ83 275 aa5.79□□□□□ -1.48
VPS35-205ENST00000563984 MYL10Q9BUA6 226 aa5.79□□□□□ -1.48
VPS35-205ENST00000563984 MAK16Q9BXY0 300 aaKnown RBP5.79□□□□□ -1.48
VPS35-205ENST00000563984 POFUT1Q9H488 388 aa5.79□□□□□ -1.48
VPS35-205ENST00000563984 RPAP3Q9H6T3 665 aaPredicted RBP5.79□□□□□ -1.48
VPS35-205ENST00000563984 KMT5AQ9NQR1 393 aa5.79□□□□□ -1.48
VPS35-205ENST00000563984 DIAPH3Q9NSV4 1193 aa5.79□□□□□ -1.48
VPS35-205ENST00000563984 ZNHIT6Q9NWK9 470 aaKnown RBP5.79□□□□□ -1.48
VPS35-205ENST00000563984 TRMT1Q9NXH9 659 aaKnown RBP5.79□□□□□ -1.48
VPS35-205ENST00000563984 CLIP2Q9UDT6 1046 aa5.79□□□□□ -1.48
VPS35-205ENST00000563984 MAPRE3Q9UPY8 281 aa5.79□□□□□ -1.48
VPS35-205ENST00000563984 HS3ST3A1Q9Y663 406 aa5.79□□□□□ -1.48
VPS35-205ENST00000563984 A0A087X0B3 334 aa5.78□□□□□ -1.48
VPS35-205ENST00000563984 C2orf78A6NCI8 922 aa5.78□□□□□ -1.48
VPS35-205ENST00000563984 GSG1L2A8MUP6 293 aa5.78□□□□□ -1.48
VPS35-205ENST00000563984 DAPK3O43293 454 aa5.78□□□□□ -1.48
VPS35-205ENST00000563984 ORC4O43929 436 aa5.78□□□□□ -1.48
VPS35-205ENST00000563984 KINO60870 393 aaKnown RBP5.78□□□□□ -1.48
VPS35-205ENST00000563984 CDKL5O76039 1030 aa5.78□□□□□ -1.48
VPS35-205ENST00000563984 APOL3O95236 402 aa5.78□□□□□ -1.48
VPS35-205ENST00000563984 MYL3P08590 195 aa5.78□□□□□ -1.48
VPS35-205ENST00000563984 LSP1P33241 339 aa5.78□□□□□ -1.48
VPS35-205ENST00000563984 LSSP48449 732 aa5.78□□□□□ -1.48
VPS35-205ENST00000563984 ATP2C1P98194 919 aaPredicted RBP5.78□□□□□ -1.48
VPS35-205ENST00000563984 COX10Q12887 443 aa5.78□□□□□ -1.48
VPS35-205ENST00000563984 FOXL1Q12952 345 aa5.78□□□□□ -1.48
VPS35-205ENST00000563984 PRPF4BQ13523 1007 aaKnown RBP5.78□□□□□ -1.48
VPS35-205ENST00000563984 RIN1Q13671 783 aa5.78□□□□□ -1.48
VPS35-205ENST00000563984 WTAPQ15007 396 aa5.78□□□□□ -1.48
VPS35-205ENST00000563984 MAN2A1Q16706 1144 aa5.78□□□□□ -1.48
VPS35-205ENST00000563984 AP1ARQ63HQ0 302 aa5.78□□□□□ -1.48
VPS35-205ENST00000563984 TTLL5Q6EMB2 1281 aa5.78□□□□□ -1.48
VPS35-205ENST00000563984 MAMDC4Q6UXC1 1216 aa5.78□□□□□ -1.48
VPS35-205ENST00000563984 SYNE3Q6ZMZ3 975 aa5.78□□□□□ -1.48
VPS35-205ENST00000563984 Q6ZSN1 163 aa5.78□□□□□ -1.48
VPS35-205ENST00000563984 ADGRE4PQ86SQ3 457 aa5.78□□□□□ -1.48
VPS35-205ENST00000563984 TRIM74Q86UV6 250 aa5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms