RNA–Protein interactions for RNA: ENST00000563683.5

RNF40-204, Transcript of ring finger protein 40, humanhuman

TSL 5 BASIC

Gene RNF40, Length 4,063 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-204ENST00000563683 TMEM253P0C7T8 217 aa11.14□□□□□ -0.63
RNF40-204ENST00000563683 SPDYE6P0CI01 402 aa11.14□□□□□ -0.63
RNF40-204ENST00000563683 SFNP31947 248 aa11.14□□□□□ -0.63
RNF40-204ENST00000563683 CAP2P40123 477 aa11.14□□□□□ -0.63
RNF40-204ENST00000563683 MXRA7P84157 204 aa11.14□□□□□ -0.63
RNF40-204ENST00000563683 LRRC14Q15048 493 aa11.14□□□□□ -0.63
RNF40-204ENST00000563683 KIAA1755Q5JYT7 1200 aa11.14□□□□□ -0.63
RNF40-204ENST00000563683 PGM2Q96G03 612 aa11.14□□□□□ -0.63
RNF40-204ENST00000563683 KIF9Q9HAQ2 790 aa11.14□□□□□ -0.63
RNF40-204ENST00000563683 DIS3Q9Y2L1 958 aaKnown RBP11.14□□□□□ -0.63
RNF40-204ENST00000563683 BAZ2AQ9UIF9 1905 aaKnown RBP11.13□□□□□ -0.63
RNF40-204ENST00000563683 BHMG1C9JSJ3 638 aaPredicted RBP11.13□□□□□ -0.63
RNF40-204ENST00000563683 PPFIA2O75334 1257 aa11.13□□□□□ -0.63
RNF40-204ENST00000563683 SKAP2O75563 359 aaPredicted RBP11.13□□□□□ -0.63
RNF40-204ENST00000563683 PEX19P40855 299 aa11.13□□□□□ -0.63
RNF40-204ENST00000563683 CCDC6Q16204 474 aa11.13□□□□□ -0.63
RNF40-204ENST00000563683 ARSHQ5FYA8 562 aa11.13□□□□□ -0.63
RNF40-204ENST00000563683 BSPRYQ5W0U4 402 aa11.13□□□□□ -0.63
RNF40-204ENST00000563683 ATG4CQ96DT6 458 aa11.13□□□□□ -0.63
RNF40-204ENST00000563683 L3MBTL3Q96JM7 780 aaPredicted RBP11.13□□□□□ -0.63
RNF40-204ENST00000563683 DNAI2Q9GZS0 605 aa11.13□□□□□ -0.63
RNF40-204ENST00000563683 NEUROG2Q9H2A3 272 aa11.13□□□□□ -0.63
RNF40-204ENST00000563683 CPSF2Q9P2I0 782 aaKnown RBP11.13□□□□□ -0.63
RNF40-204ENST00000563683 DIAPH2O60879 1101 aa11.13□□□□□ -0.63
RNF40-204ENST00000563683 RNF8O76064 485 aa11.13□□□□□ -0.63
RNF40-204ENST00000563683 CHRNA3P32297 505 aa11.13□□□□□ -0.63
RNF40-204ENST00000563683 TMED2Q15363 201 aa11.13□□□□□ -0.63
RNF40-204ENST00000563683 HADHQ16836 314 aaKnown RBP11.13□□□□□ -0.63
RNF40-204ENST00000563683 C6orf118Q5T5N4 469 aa11.13□□□□□ -0.63
RNF40-204ENST00000563683 GMCL1P1Q8NEA9 526 aa11.13□□□□□ -0.63
RNF40-204ENST00000563683 AGAP11Q8TF27 550 aa11.13□□□□□ -0.63
RNF40-204ENST00000563683 SLC20A1Q8WUM9 679 aa11.13□□□□□ -0.63
RNF40-204ENST00000563683 TRIM11Q96F44 468 aa11.13□□□□□ -0.63
RNF40-204ENST00000563683 IDI2Q9BXS1 227 aa11.13□□□□□ -0.63
RNF40-204ENST00000563683 CALN1Q9BXU9 219 aa11.13□□□□□ -0.63
RNF40-204ENST00000563683 IVNS1ABPQ9Y6Y0 642 aa11.13□□□□□ -0.63
RNF40-204ENST00000563683 DCDC2CA8MYV0 355 aa11.13□□□□□ -0.63
RNF40-204ENST00000563683 NKRFO15226 690 aaKnown RBP eCLIP11.13□□□□□ -0.63
RNF40-204ENST00000563683 TLR2O60603 784 aa11.13□□□□□ -0.63
RNF40-204ENST00000563683 POLR2BP30876 1174 aaKnown RBP11.13□□□□□ -0.63
RNF40-204ENST00000563683 SOX10P56693 466 aa11.13□□□□□ -0.63
RNF40-204ENST00000563683 ADCY2Q08462 1091 aa11.13□□□□□ -0.63
RNF40-204ENST00000563683 FAM160B1Q5W0V3 765 aa11.13□□□□□ -0.63
RNF40-204ENST00000563683 NUGGCQ68CJ6 796 aa11.13□□□□□ -0.63
RNF40-204ENST00000563683 SULF1Q8IWU6 871 aa11.13□□□□□ -0.63
RNF40-204ENST00000563683 ADAM33Q9BZ11 813 aa11.13□□□□□ -0.63
RNF40-204ENST00000563683 KLHL14Q9P2G3 628 aa11.13□□□□□ -0.63
RNF40-204ENST00000563683 SUCLA2Q9P2R7 463 aaPredicted RBP11.13□□□□□ -0.63
RNF40-204ENST00000563683 L3MBTL1Q9Y468 752 aa11.13□□□□□ -0.63
RNF40-204ENST00000563683 DDX3XO00571 662 aaKnown RBP eCLIP11.12□□□□□ -0.636e-9■■□□□ 13.9
RNF40-204ENST00000563683 AGTP01019 485 aa11.12□□□□□ -0.63
RNF40-204ENST00000563683 NUDT17P0C025 328 aa11.12□□□□□ -0.63
RNF40-204ENST00000563683 ALADP13716 330 aa11.12□□□□□ -0.63
RNF40-204ENST00000563683 MMP13P45452 471 aa11.12□□□□□ -0.63
RNF40-204ENST00000563683 YARSP54577 528 aaKnown RBP11.12□□□□□ -0.63
RNF40-204ENST00000563683 STXBP2Q15833 593 aa11.12□□□□□ -0.63
RNF40-204ENST00000563683 NBPF20Q3BBV1 942 aa11.12□□□□□ -0.63
RNF40-204ENST00000563683 STYK1Q6J9G0 422 aa11.12□□□□□ -0.63
RNF40-204ENST00000563683 LRRC34Q8IZ02 419 aa11.12□□□□□ -0.63
RNF40-204ENST00000563683 TEX9Q8N6V9 391 aa11.12□□□□□ -0.63
RNF40-204ENST00000563683 SEC14L1Q92503 715 aa11.12□□□□□ -0.63
RNF40-204ENST00000563683 FERMT1Q9BQL6 677 aa11.12□□□□□ -0.63
RNF40-204ENST00000563683 KLHL11Q9NVR0 708 aa11.12□□□□□ -0.63
RNF40-204ENST00000563683 AGO2Q9UKV8 859 aaKnown RBP11.12□□□□□ -0.63
RNF40-204ENST00000563683 M0R2N6 131 aa11.12□□□□□ -0.63
RNF40-204ENST00000563683 WDR46O15213 610 aaKnown RBP11.12□□□□□ -0.63
RNF40-204ENST00000563683 CAND2O75155 1236 aa11.12□□□□□ -0.63
RNF40-204ENST00000563683 SUN1O94901 812 aa11.12□□□□□ -0.63
RNF40-204ENST00000563683 SGPL1O95470 568 aa11.12□□□□□ -0.63
RNF40-204ENST00000563683 FLT3P36888 993 aa11.12□□□□□ -0.63
RNF40-204ENST00000563683 TKFCQ3LXA3 575 aa11.12□□□□□ -0.63
RNF40-204ENST00000563683 CBWD6Q4V339 395 aa11.12□□□□□ -0.63
RNF40-204ENST00000563683 CBWD3Q5JTY5 395 aa11.12□□□□□ -0.63
RNF40-204ENST00000563683 CBWD5Q5RIA9 395 aa11.12□□□□□ -0.63
RNF40-204ENST00000563683 GPD1LQ8N335 351 aa11.12□□□□□ -0.63
RNF40-204ENST00000563683 LRRC15Q8TF66 581 aa11.12□□□□□ -0.63
RNF40-204ENST00000563683 KLHL29Q96CT2 875 aa11.12□□□□□ -0.63
RNF40-204ENST00000563683 TRIM7Q9C029 511 aa11.12□□□□□ -0.63
RNF40-204ENST00000563683 CCDC134Q9H6E4 229 aa11.12□□□□□ -0.63
RNF40-204ENST00000563683 ZWILCHQ9H900 591 aa11.12□□□□□ -0.63
RNF40-204ENST00000563683 JPH1Q9HDC5 661 aaPredicted RBP11.12□□□□□ -0.63
RNF40-204ENST00000563683 OLFML3Q9NRN5 406 aa11.12□□□□□ -0.63
RNF40-204ENST00000563683 RBAKQ9NYW8 714 aaPredicted RBP11.12□□□□□ -0.63
RNF40-204ENST00000563683 KCND2Q9NZV8 630 aa11.12□□□□□ -0.63
RNF40-204ENST00000563683 USP20Q9Y2K6 914 aa11.12□□□□□ -0.63
RNF40-204ENST00000563683 DUOX1Q9NRD9 1551 aa11.12□□□□□ -0.63
RNF40-204ENST00000563683 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.12□□□□□ -0.63
RNF40-204ENST00000563683 KLHL33A6NCF5 533 aa11.12□□□□□ -0.63
RNF40-204ENST00000563683 PI4K2BG5E9Z4 385 aa11.12□□□□□ -0.63
RNF40-204ENST00000563683 TLR3O15455 904 aaKnown RBP11.12□□□□□ -0.63
RNF40-204ENST00000563683 SMNDC1O75940 238 aaKnown RBP eCLIP11.12□□□□□ -0.63
RNF40-204ENST00000563683 SPATA31C1P0DKV0 1188 aa11.12□□□□□ -0.63
RNF40-204ENST00000563683 ANXA13P27216 316 aa11.12□□□□□ -0.63
RNF40-204ENST00000563683 EAPPQ56P03 285 aaPredicted RBP11.12□□□□□ -0.63
RNF40-204ENST00000563683 CDCA2Q69YH5 1023 aaPredicted RBP11.12□□□□□ -0.63
RNF40-204ENST00000563683 CASC4Q6P4E1 433 aa11.12□□□□□ -0.63
RNF40-204ENST00000563683 CEP128Q6ZU80 1094 aa11.12□□□□□ -0.63
RNF40-204ENST00000563683 JAMLQ86YT9 394 aa11.12□□□□□ -0.63
RNF40-204ENST00000563683 MKL1Q969V6 931 aa11.12□□□□□ -0.63
RNF40-204ENST00000563683 WNT8AQ9H1J5 351 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms