RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 GPR20Q99678 358 aa9.88□□□□□ -0.83
VPS39-205ENST00000562258 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.88□□□□□ -0.83
VPS39-205ENST00000562258 DDX20Q9UHI6 824 aaKnown RBP9.88□□□□□ -0.83
VPS39-205ENST00000562258 UBQLN1Q9UMX0 589 aaKnown RBP9.88□□□□□ -0.83
VPS39-205ENST00000562258 SSX2IPQ9Y2D8 614 aa9.88□□□□□ -0.83
VPS39-205ENST00000562258 I3L4J1 428 aa9.88□□□□□ -0.83
VPS39-205ENST00000562258 PRPSAP2O60256 369 aa9.88□□□□□ -0.83
VPS39-205ENST00000562258 CABYRO75952 493 aa9.88□□□□□ -0.83
VPS39-205ENST00000562258 TLE2Q04725 743 aa9.88□□□□□ -0.83
VPS39-205ENST00000562258 SGSM1Q2NKQ1 1148 aa9.88□□□□□ -0.83
VPS39-205ENST00000562258 MAP9Q49MG5 647 aa9.88□□□□□ -0.83
VPS39-205ENST00000562258 FAM102AQ5T9C2 384 aaPredicted RBP9.88□□□□□ -0.83
VPS39-205ENST00000562258 SPOPLQ6IQ16 392 aa9.88□□□□□ -0.83
VPS39-205ENST00000562258 SYCE1Q8N0S2 351 aa9.88□□□□□ -0.83
VPS39-205ENST00000562258 HAUS1Q96CS2 278 aa9.88□□□□□ -0.83
VPS39-205ENST00000562258 SPON2Q9BUD6 331 aa9.88□□□□□ -0.83
VPS39-205ENST00000562258 IKZF4Q9H2S9 585 aa9.88□□□□□ -0.83
VPS39-205ENST00000562258 ANAPC7Q9UJX3 599 aa9.88□□□□□ -0.83
VPS39-205ENST00000562258 ITGB4P16144 1822 aa9.87□□□□□ -0.83
VPS39-205ENST00000562258 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.87□□□□□ -0.83
VPS39-205ENST00000562258 B4GALT5O43286 388 aa9.87□□□□□ -0.83
VPS39-205ENST00000562258 ACRP10323 421 aa9.87□□□□□ -0.83
VPS39-205ENST00000562258 SP100P23497 879 aaPredicted RBP9.87□□□□□ -0.83
VPS39-205ENST00000562258 CCND3P30281 292 aaPredicted RBP9.87□□□□□ -0.83
VPS39-205ENST00000562258 MDM2Q00987 491 aaPredicted RBP9.87□□□□□ -0.83
VPS39-205ENST00000562258 SLC35G1Q2M3R5 365 aa9.87□□□□□ -0.83
VPS39-205ENST00000562258 FRMD5Q7Z6J6 570 aa9.87□□□□□ -0.83
VPS39-205ENST00000562258 HSPH1Q92598 858 aa9.87□□□□□ -0.83
VPS39-205ENST00000562258 PPANQ9NQ55 473 aaKnown RBP9.87□□□□□ -0.83
VPS39-205ENST00000562258 ST3GAL5Q9UNP4 418 aa9.87□□□□□ -0.83
VPS39-205ENST00000562258 TRPV2Q9Y5S1 764 aa9.87□□□□□ -0.83
VPS39-205ENST00000562258 SYNGAP1Q96PV0 1343 aa9.87□□□□□ -0.83
VPS39-205ENST00000562258 AKAP3O75969 853 aa9.87□□□□□ -0.83
VPS39-205ENST00000562258 STK10O94804 968 aaKnown RBP9.87□□□□□ -0.83
VPS39-205ENST00000562258 MMP3P08254 477 aa9.87□□□□□ -0.83
VPS39-205ENST00000562258 TBXAS1P24557 533 aaPredicted RBP9.87□□□□□ -0.83
VPS39-205ENST00000562258 ACAT1P24752 427 aaKnown RBP9.87□□□□□ -0.83
VPS39-205ENST00000562258 PSMA2P25787 234 aa9.87□□□□□ -0.83
VPS39-205ENST00000562258 GNL1P36915 607 aaPredicted RBP9.87□□□□□ -0.83
VPS39-205ENST00000562258 TAF6P49848 677 aa9.87□□□□□ -0.83
VPS39-205ENST00000562258 SCNN1GP51170 649 aa9.87□□□□□ -0.83
VPS39-205ENST00000562258 C1QTNF8P60827 252 aa9.87□□□□□ -0.83
VPS39-205ENST00000562258 GFPT1Q06210 699 aaPredicted RBP9.87□□□□□ -0.83
VPS39-205ENST00000562258 SNX1Q13596 522 aa9.87□□□□□ -0.83
VPS39-205ENST00000562258 MAP7D3Q8IWC1 876 aa9.87□□□□□ -0.83
VPS39-205ENST00000562258 RSAD2Q8WXG1 361 aa9.87□□□□□ -0.83
VPS39-205ENST00000562258 COLEC11Q9BWP8 271 aa9.87□□□□□ -0.83
VPS39-205ENST00000562258 HAUS4Q9H6D7 363 aa9.87□□□□□ -0.83
VPS39-205ENST00000562258 AAASQ9NRG9 546 aa9.87□□□□□ -0.83
VPS39-205ENST00000562258 ARIH2O95376 493 aa9.87□□□□□ -0.83
VPS39-205ENST00000562258 FTLP02792 175 aaPredicted RBP9.87□□□□□ -0.83
VPS39-205ENST00000562258 GLRA2P23416 452 aa9.87□□□□□ -0.83
VPS39-205ENST00000562258 GJA5P36382 358 aa9.87□□□□□ -0.83
VPS39-205ENST00000562258 KLK7P49862 253 aa9.87□□□□□ -0.83
VPS39-205ENST00000562258 ACOT1Q86TX2 421 aa9.87□□□□□ -0.83
VPS39-205ENST00000562258 RFX6Q8HWS3 928 aa9.87□□□□□ -0.83
VPS39-205ENST00000562258 ETNPPLQ8TBG4 499 aa9.87□□□□□ -0.83
VPS39-205ENST00000562258 FAM81BQ96LP2 452 aa9.87□□□□□ -0.83
VPS39-205ENST00000562258 CELF4Q9BZC1 486 aaKnown RBP9.87□□□□□ -0.83
VPS39-205ENST00000562258 UNC93B1Q9H1C4 597 aa9.87□□□□□ -0.83
VPS39-205ENST00000562258 AGPAT5Q9NUQ2 364 aa9.87□□□□□ -0.83
VPS39-205ENST00000562258 RPTORQ8N122 1335 aa9.87□□□□□ -0.83
VPS39-205ENST00000562258 ACKR2O00590 384 aa9.86□□□□□ -0.83
VPS39-205ENST00000562258 CREB3O43889 395 aa9.86□□□□□ -0.83
VPS39-205ENST00000562258 RECQL4O94761 1208 aa9.86□□□□□ -0.83
VPS39-205ENST00000562258 SERPING1P05155 500 aa9.86□□□□□ -0.83
VPS39-205ENST00000562258 ACO1P21399 889 aaKnown RBP9.86□□□□□ -0.83
VPS39-205ENST00000562258 GUCY2CP25092 1073 aa9.86□□□□□ -0.83
VPS39-205ENST00000562258 ARL4AP40617 200 aa9.86□□□□□ -0.83
VPS39-205ENST00000562258 FAM171A1Q5VUB5 890 aa9.86□□□□□ -0.83
VPS39-205ENST00000562258 BTBD8Q5XKL5 378 aa9.86□□□□□ -0.83
VPS39-205ENST00000562258 CTU1Q7Z7A3 348 aaKnown RBP9.86□□□□□ -0.83
VPS39-205ENST00000562258 TAS1R2Q8TE23 839 aa9.86□□□□□ -0.83
VPS39-205ENST00000562258 CPA5Q8WXQ8 436 aa9.86□□□□□ -0.83
VPS39-205ENST00000562258 HSD17B14Q9BPX1 270 aa9.86□□□□□ -0.83
VPS39-205ENST00000562258 PAIP2Q9BPZ3 127 aaKnown RBP9.86□□□□□ -0.83
VPS39-205ENST00000562258 MRPL47Q9HD33 250 aaKnown RBP9.86□□□□□ -0.83
VPS39-205ENST00000562258 FHOD1Q9Y613 1164 aa9.86□□□□□ -0.83
VPS39-205ENST00000562258 SLX4Q8IY92 1834 aa9.86□□□□□ -0.83
VPS39-205ENST00000562258 GAS8O95995 478 aa9.86□□□□□ -0.83
VPS39-205ENST00000562258 HSPA1AP0DMV8 641 aaKnown RBP9.86□□□□□ -0.83
VPS39-205ENST00000562258 HSPA1BP0DMV9 641 aaKnown RBP9.86□□□□□ -0.83
VPS39-205ENST00000562258 XPAP23025 273 aaPredicted RBP9.86□□□□□ -0.83
VPS39-205ENST00000562258 MLH1P40692 756 aa9.86□□□□□ -0.83
VPS39-205ENST00000562258 CASP5P51878 434 aa9.86□□□□□ -0.83
VPS39-205ENST00000562258 MYL6P60660 151 aa9.86□□□□□ -0.83
VPS39-205ENST00000562258 TRIM32Q13049 653 aa9.86□□□□□ -0.83
VPS39-205ENST00000562258 IL17AQ16552 155 aa9.86□□□□□ -0.83
VPS39-205ENST00000562258 EDRF1Q3B7T1 1238 aa9.86□□□□□ -0.83
VPS39-205ENST00000562258 C8orf74Q6P047 294 aa9.86□□□□□ -0.83
VPS39-205ENST00000562258 RBBP8NLQ8NC74 664 aaPredicted RBP9.86□□□□□ -0.83
VPS39-205ENST00000562258 APOL5Q9BWW9 433 aa9.86□□□□□ -0.83
VPS39-205ENST00000562258 CYB561D2O14569 222 aa9.86□□□□□ -0.83
VPS39-205ENST00000562258 NDUFA10O95299 355 aa9.86□□□□□ -0.83
VPS39-205ENST00000562258 MOCS3O95396 460 aa9.86□□□□□ -0.83
VPS39-205ENST00000562258 CYP2C18P33260 490 aa9.86□□□□□ -0.83
VPS39-205ENST00000562258 SLC27A1Q6PCB7 646 aa9.86□□□□□ -0.83
VPS39-205ENST00000562258 TMEM199Q8N511 208 aa9.86□□□□□ -0.83
VPS39-205ENST00000562258 NAP1L3Q99457 506 aaPredicted RBP9.86□□□□□ -0.83
VPS39-205ENST00000562258 NT5C1AQ9BXI3 368 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms