RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 CES5AQ6NT32 575 aa17.16■□□□□ 0.34
VPS39-203ENST00000561797 KRI1Q8N9T8 703 aaKnown RBP17.16■□□□□ 0.34
VPS39-203ENST00000561797 SUSD6Q92537 303 aa17.16■□□□□ 0.34
VPS39-203ENST00000561797 BICD1Q96G01 975 aa17.16■□□□□ 0.34
VPS39-203ENST00000561797 RPGRIP1Q96KN7 1286 aa17.16■□□□□ 0.34
VPS39-203ENST00000561797 ACAP3Q96P50 834 aa17.16■□□□□ 0.34
VPS39-203ENST00000561797 PHF7Q9BWX1 381 aaPredicted RBP17.16■□□□□ 0.34
VPS39-203ENST00000561797 PANK2Q9BZ23 570 aa17.16■□□□□ 0.34
VPS39-203ENST00000561797 PARVGQ9HBI0 331 aa17.16■□□□□ 0.34
VPS39-203ENST00000561797 DAXXQ9UER7 740 aaPredicted RBP17.16■□□□□ 0.34
VPS39-203ENST00000561797 SSX2IPQ9Y2D8 614 aa17.16■□□□□ 0.34
VPS39-203ENST00000561797 MYO10Q9HD67 2058 aa17.16■□□□□ 0.34
VPS39-203ENST00000561797 C5orf42Q9H799 3197 aa17.15■□□□□ 0.34
VPS39-203ENST00000561797 PI4K2BG5E9Z4 385 aa17.15■□□□□ 0.34
VPS39-203ENST00000561797 H0YCG3 227 aa17.15■□□□□ 0.34
VPS39-203ENST00000561797 K7ENM7 598 aa17.15■□□□□ 0.34
VPS39-203ENST00000561797 ABLIM1O14639 778 aa17.15■□□□□ 0.34
VPS39-203ENST00000561797 TBCAO75347 108 aaKnown RBP17.15■□□□□ 0.34
VPS39-203ENST00000561797 TOM1L1O75674 476 aa17.15■□□□□ 0.34
VPS39-203ENST00000561797 KIF4AO95239 1232 aa17.15■□□□□ 0.34
VPS39-203ENST00000561797 WEE2P0C1S8 567 aa17.15■□□□□ 0.34
VPS39-203ENST00000561797 NASPP49321 788 aaPredicted RBP17.15■□□□□ 0.34
VPS39-203ENST00000561797 CLCN4P51793 760 aa17.15■□□□□ 0.34
VPS39-203ENST00000561797 DSG1Q02413 1049 aa17.15■□□□□ 0.34
VPS39-203ENST00000561797 CBX2Q14781 532 aaPredicted RBP17.15■□□□□ 0.34
VPS39-203ENST00000561797 USP41Q3LFD5 358 aa17.15■□□□□ 0.34
VPS39-203ENST00000561797 FOXD4L6Q3SYB3 417 aaPredicted RBP17.15■□□□□ 0.34
VPS39-203ENST00000561797 FOXD4L3Q6VB84 417 aaPredicted RBP17.15■□□□□ 0.34
VPS39-203ENST00000561797 DYMQ7RTS9 669 aa17.15■□□□□ 0.34
VPS39-203ENST00000561797 GLYCTKQ8IVS8 523 aa17.15■□□□□ 0.34
VPS39-203ENST00000561797 RIN2Q8WYP3 895 aaPredicted RBP17.15■□□□□ 0.34
VPS39-203ENST00000561797 ZNF396Q96N95 335 aaPredicted RBP17.15■□□□□ 0.34
VPS39-203ENST00000561797 PPP1R10Q96QC0 940 aaKnown RBP17.15■□□□□ 0.34
VPS39-203ENST00000561797 TOPORSQ9NS56 1045 aaPredicted RBP17.15■□□□□ 0.34
VPS39-203ENST00000561797 DZANK1Q9NVP4 752 aa17.15■□□□□ 0.34
VPS39-203ENST00000561797 STK17AQ9UEE5 414 aa17.15■□□□□ 0.34
VPS39-203ENST00000561797 DENND4AQ7Z401 1863 aa17.15■□□□□ 0.34
VPS39-203ENST00000561797 TCHHQ07283 1943 aa17.15■□□□□ 0.34
VPS39-203ENST00000561797 SMIM28A0A1B0GU29 152 aa17.14■□□□□ 0.33
VPS39-203ENST00000561797 TEX28O15482 410 aa17.14■□□□□ 0.33
VPS39-203ENST00000561797 TRAK2O60296 914 aa17.14■□□□□ 0.33
VPS39-203ENST00000561797 ADH1AP07327 375 aa17.14■□□□□ 0.33
VPS39-203ENST00000561797 MYBP10242 640 aa17.14■□□□□ 0.33
VPS39-203ENST00000561797 SP100P23497 879 aaPredicted RBP17.14■□□□□ 0.33
VPS39-203ENST00000561797 ZNF131P52739 623 aa17.14■□□□□ 0.33
VPS39-203ENST00000561797 NOLC1Q14978 699 aaKnown RBP eCLIP17.14■□□□□ 0.33
VPS39-203ENST00000561797 ZPBP2Q6X784 338 aa17.14■□□□□ 0.33
VPS39-203ENST00000561797 CEP57Q86XR8 500 aa17.14■□□□□ 0.33
VPS39-203ENST00000561797 RNF135Q8IUD6 432 aa17.14■□□□□ 0.33
VPS39-203ENST00000561797 LINC00301Q8NCQ3 95 aa17.14■□□□□ 0.33
VPS39-203ENST00000561797 FBXL18Q96ME1 805 aa17.14■□□□□ 0.33
VPS39-203ENST00000561797 C1QTNF1Q9BXJ1 281 aa17.14■□□□□ 0.33
VPS39-203ENST00000561797 ADAM7Q9H2U9 754 aa17.14■□□□□ 0.33
VPS39-203ENST00000561797 GOLGA2P5Q9HBQ8 144 aa17.14■□□□□ 0.33
VPS39-203ENST00000561797 CHST7Q9NS84 486 aa17.14■□□□□ 0.33
VPS39-203ENST00000561797 SF3B1O75533 1304 aaKnown RBP eCLIP17.14■□□□□ 0.33
VPS39-203ENST00000561797 LOC730098B7Z3J9 87 aa17.13■□□□□ 0.33
VPS39-203ENST00000561797 SPTLC2O15270 562 aa17.13■□□□□ 0.33
VPS39-203ENST00000561797 CLDN3O15551 220 aa17.13■□□□□ 0.33
VPS39-203ENST00000561797 BRD1O95696 1058 aa17.13■□□□□ 0.33
VPS39-203ENST00000561797 ZSCAN22P10073 491 aaPredicted RBP17.13■□□□□ 0.33
VPS39-203ENST00000561797 RPL17P18621 184 aaKnown RBP17.13■□□□□ 0.33
VPS39-203ENST00000561797 IGFBP6P24592 240 aaPredicted RBP17.13■□□□□ 0.33
VPS39-203ENST00000561797 NMT1P30419 496 aaKnown RBP17.13■□□□□ 0.33
VPS39-203ENST00000561797 LIG4P49917 911 aa17.13■□□□□ 0.33
VPS39-203ENST00000561797 CLCNKBP51801 687 aa17.13■□□□□ 0.33
VPS39-203ENST00000561797 ITIH3Q06033 890 aa17.13■□□□□ 0.33
VPS39-203ENST00000561797 FAM171A1Q5VUB5 890 aa17.13■□□□□ 0.33
VPS39-203ENST00000561797 PRSS55Q6UWB4 352 aaPredicted RBP17.13■□□□□ 0.33
VPS39-203ENST00000561797 ALKAL1Q6UXT8 129 aa17.13■□□□□ 0.33
VPS39-203ENST00000561797 TMC5Q6UXY8 1006 aa17.13■□□□□ 0.33
VPS39-203ENST00000561797 SV2BQ7L1I2 683 aa17.13■□□□□ 0.33
VPS39-203ENST00000561797 PALB2Q86YC2 1186 aa17.13■□□□□ 0.33
VPS39-203ENST00000561797 FEZF2Q8TBJ5 459 aa17.13■□□□□ 0.33
VPS39-203ENST00000561797 SNX27Q96L92 541 aa17.13■□□□□ 0.33
VPS39-203ENST00000561797 RXFP1Q9HBX9 757 aa17.13■□□□□ 0.33
VPS39-203ENST00000561797 TBX20Q9UMR3 447 aa17.13■□□□□ 0.33
VPS39-203ENST00000561797 MORC2Q9Y6X9 1032 aaPredicted RBP17.13■□□□□ 0.33
VPS39-203ENST00000561797 A0A087X0B3 334 aa17.12■□□□□ 0.33
VPS39-203ENST00000561797 FAM86C2PA6NEL3 165 aa17.12■□□□□ 0.33
VPS39-203ENST00000561797 DCXO43602 365 aa17.12■□□□□ 0.33
VPS39-203ENST00000561797 F13A1P00488 732 aa17.12■□□□□ 0.33
VPS39-203ENST00000561797 SPATA31D3P0C874 917 aa17.12■□□□□ 0.33
VPS39-203ENST00000561797 ALADP13716 330 aa17.12■□□□□ 0.33
VPS39-203ENST00000561797 STAT6P42226 847 aa17.12■□□□□ 0.33
VPS39-203ENST00000561797 MTHFRP42898 656 aa17.12■□□□□ 0.33
VPS39-203ENST00000561797 SOX4Q06945 474 aaPredicted RBP17.12■□□□□ 0.33
VPS39-203ENST00000561797 RTP2Q5QGT7 225 aa17.12■□□□□ 0.33
VPS39-203ENST00000561797 CCDC73Q6ZRK6 1079 aa17.12■□□□□ 0.33
VPS39-203ENST00000561797 SPATA31D4Q6ZUB0 917 aa17.12■□□□□ 0.33
VPS39-203ENST00000561797 PDILTQ8N807 584 aa17.12■□□□□ 0.33
VPS39-203ENST00000561797 DDX12PQ92771 950 aa17.12■□□□□ 0.33
VPS39-203ENST00000561797 RIPOR3Q96MK2 946 aa17.12■□□□□ 0.33
VPS39-203ENST00000561797 ZMAT2Q96NC0 199 aaKnown RBP17.12■□□□□ 0.33
VPS39-203ENST00000561797 TTPALQ9BTX7 342 aa17.12■□□□□ 0.33
VPS39-203ENST00000561797 HAPLN2Q9GZV7 340 aa17.12■□□□□ 0.33
VPS39-203ENST00000561797 POMKQ9H5K3 350 aa17.12■□□□□ 0.33
VPS39-203ENST00000561797 MAN1C1Q9NR34 630 aa17.12■□□□□ 0.33
VPS39-203ENST00000561797 TSHZ2Q9NRE2 1034 aa17.12■□□□□ 0.33
VPS39-203ENST00000561797 MUTYHQ9UIF7 546 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms